Wall clock time and date at job start Sun Mar 29 2020 21:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99949 * 2 1 4 4 H 1.48493 * 109.46984 * 269.99685 * 3 2 1 5 5 H 1.48498 * 109.47116 * 29.99910 * 3 2 1 6 6 H 1.48505 * 109.47164 * 149.99633 * 3 2 1 7 7 C 1.38813 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99974 * 197.35316 * 7 2 1 9 9 N 1.36934 * 119.99986 * 17.35158 * 7 2 1 10 10 C 1.46921 * 120.63094 * 207.68042 * 9 7 2 11 11 C 1.53192 * 108.77730 * 233.61401 * 10 9 7 12 12 C 1.53036 * 109.31243 * 305.36364 * 11 10 9 13 13 C 1.53042 * 109.53796 * 61.36821 * 12 11 10 14 14 H 1.09002 * 109.50002 * 58.61454 * 13 12 11 15 15 N 1.46500 * 109.49956 * 178.68402 * 13 12 11 16 16 C 1.46764 * 124.34567 * 239.93546 * 15 13 12 17 17 C 1.54481 * 105.47117 * 197.03545 * 16 15 13 18 18 C 1.54619 * 101.76603 * 334.58401 * 17 16 15 19 19 C 1.34419 * 124.35169 * 59.95745 * 15 13 12 20 20 O 1.21277 * 124.93732 * 359.60881 * 19 15 13 21 21 C 1.46931 * 120.60381 * 27.70933 * 9 7 2 22 22 H 0.97001 * 120.00381 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.58713 * 113.82493 * 10 9 7 24 24 H 1.09000 * 109.59184 * 353.40440 * 10 9 7 25 25 H 1.09008 * 109.49690 * 185.41683 * 11 10 9 26 26 H 1.08994 * 109.50087 * 65.32292 * 11 10 9 27 27 H 1.08999 * 109.46506 * 301.34689 * 12 11 10 28 28 H 1.09007 * 109.44828 * 181.37998 * 12 11 10 29 29 H 1.09000 * 110.25045 * 78.03654 * 16 15 13 30 30 H 1.09002 * 110.25002 * 316.03431 * 16 15 13 31 31 H 1.09004 * 110.96831 * 216.46238 * 17 16 15 32 32 H 1.09004 * 110.96773 * 92.70427 * 17 16 15 33 33 H 1.09003 * 110.48669 * 143.47189 * 18 17 16 34 34 H 1.08994 * 110.48899 * 266.12079 * 18 17 16 35 35 H 1.09000 * 109.61837 * 6.62070 * 21 9 7 36 36 H 1.08997 * 109.56031 * 246.18715 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3526 10 6 1.8193 -3.6546 0.1821 11 6 2.0746 -4.6101 -0.9877 12 6 0.8190 -4.6904 -1.8589 13 6 0.5009 -3.3054 -2.4272 14 1 1.3493 -2.9480 -3.0108 15 7 -0.6828 -3.3894 -3.2862 16 6 -0.6980 -3.0399 -4.7115 17 6 -2.1885 -2.8608 -5.0760 18 6 -2.8811 -3.7482 -4.0160 19 6 -1.8946 -3.7959 -2.8701 20 8 -2.1587 -4.1489 -1.7403 21 6 0.2281 -2.3344 -1.2741 22 1 -0.4851 0.8400 -0.0004 23 1 1.0470 -4.0686 0.8303 24 1 2.7400 -3.5171 0.7492 25 1 2.3139 -5.6013 -0.6023 26 1 2.9084 -4.2403 -1.5843 27 1 -0.0201 -5.0368 -1.2557 28 1 0.9898 -5.3887 -2.6784 29 1 -0.2594 -3.8444 -5.3019 30 1 -0.1547 -2.1097 -4.8777 31 1 -2.3905 -3.2262 -6.0830 32 1 -2.4930 -1.8194 -4.9722 33 1 -3.8188 -3.2956 -3.6934 34 1 -3.0555 -4.7489 -4.4112 35 1 0.0991 -1.3264 -1.6681 36 1 -0.6741 -2.6403 -0.7445 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334311088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:44 Heat of formation + Delta-G solvation = -14.857513 kcal Electronic energy + Delta-G solvation = -17995.703735 eV Core-core repulsion = 15287.149685 eV Total energy + Delta-G solvation = -2708.554050 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.08966 -37.10603 -35.86666 -33.28950 -31.97952 -29.92647 -28.31891 -27.26130 -25.21130 -22.45670 -22.04378 -21.69115 -19.59608 -18.28306 -16.75075 -16.28526 -15.99690 -15.10271 -14.39528 -13.90902 -13.54391 -13.41876 -13.37968 -13.19924 -12.81745 -12.57678 -12.30899 -12.23243 -11.61610 -11.36145 -11.01055 -10.91285 -10.75927 -10.60512 -10.44628 -10.20414 -9.88799 -9.72018 -9.56800 -9.06746 -8.42491 -8.16777 -6.61592 -5.74291 -3.18351 3.08344 3.37799 3.44566 3.46703 3.48812 4.51716 4.61013 4.63600 4.92083 5.22207 5.38718 5.50314 5.59398 5.63751 5.65661 5.74259 5.81070 5.83771 5.87447 6.04176 6.08553 6.27140 6.42998 6.54233 6.60982 6.76838 6.86208 7.09475 7.10758 7.38581 7.70805 7.82137 7.82815 8.47061 8.71047 9.23815 9.87659 10.45214 11.32889 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.008813 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.761745 B = 3176.370666 C = 3776.458399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.590 5.590 10 C 0.143 3.857 11 C -0.129 4.129 12 C -0.121 4.121 13 C 0.131 3.869 14 H 0.077 0.923 15 N -0.609 5.609 16 C 0.102 3.898 17 C -0.131 4.131 18 C -0.156 4.156 19 C 0.513 3.487 20 O -0.526 6.526 21 C 0.165 3.835 22 H 0.253 0.747 23 H 0.020 0.980 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -6.903 -11.505 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.169 4.169 12 C -0.160 4.160 13 C 0.028 3.972 14 H 0.095 0.905 15 N -0.344 5.344 16 C -0.022 4.022 17 C -0.169 4.169 18 C -0.197 4.197 19 C 0.299 3.701 20 O -0.402 6.402 21 C 0.038 3.962 22 H 0.063 0.937 23 H 0.038 0.962 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.862 -6.922 -10.818 12.977 hybrid contribution 0.442 0.916 -0.180 1.033 sum -1.419 -6.006 -10.998 12.611 Atomic orbital electron populations 1.70075 1.05229 1.25419 1.53461 1.25085 0.95260 0.98453 1.00909 0.86294 0.79155 0.83741 0.77622 1.21511 1.21765 1.20374 1.19207 0.92742 0.84793 1.41685 0.91499 1.43987 1.36068 1.01662 1.49557 1.20952 0.97591 0.86844 0.92986 1.22000 0.96925 0.99225 0.98763 1.21773 0.99074 0.96285 0.98860 1.22007 0.84965 0.97327 0.92889 0.90508 1.48481 1.10465 1.65536 1.09869 1.22026 0.97221 1.00845 0.82104 1.22577 0.94392 1.00992 0.98961 1.22336 0.99529 1.01999 0.95818 1.20740 0.83613 0.76790 0.88908 1.90713 1.80527 1.47936 1.21032 1.21084 0.89901 0.97466 0.87703 0.93652 0.96230 0.92743 0.92812 0.92471 0.91067 0.93870 0.91741 0.90514 0.89715 0.90021 0.88489 0.88528 0.89622 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 11.19 55.49 0.62 -26.38 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -7.17 9.58 -15.06 -0.14 -7.31 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 9 N -0.59 -15.52 3.00 -172.32 -0.52 -16.04 16 10 C 0.14 3.19 6.52 -3.71 -0.02 3.17 16 11 C -0.13 -2.40 6.08 -26.61 -0.16 -2.56 16 12 C -0.12 -2.31 5.15 -26.69 -0.14 -2.45 16 13 C 0.13 2.66 2.89 -67.81 -0.20 2.47 16 14 H 0.08 1.52 8.07 -51.93 -0.42 1.10 16 15 N -0.61 -10.66 2.83 -164.70 -0.47 -11.13 16 16 C 0.10 1.27 7.30 -3.12 -0.02 1.25 16 17 C -0.13 -1.34 7.18 -25.10 -0.18 -1.52 16 18 C -0.16 -1.95 6.86 -26.75 -0.18 -2.14 16 19 C 0.51 9.43 7.40 -10.86 -0.08 9.35 16 20 O -0.53 -12.06 15.09 5.56 0.08 -11.97 16 21 C 0.17 4.21 4.66 -3.70 -0.02 4.19 16 22 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 1.16 7.93 -51.93 -0.41 0.75 16 25 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.52 6.82 -51.93 -0.35 1.17 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 36 H 0.04 1.09 6.65 -51.93 -0.35 0.74 16 LS Contribution 284.67 15.07 4.29 4.29 Total: -1.00 -33.16 284.67 -7.87 -41.03 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.62 Total: -1.12 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -1.23 Total: 4.41 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.36 Total: -53.55 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.16 -7.87 -41.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334311088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.176 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds