Wall clock time and date at job start Sun Mar 29 2020 21:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99949 * 2 1 4 4 H 1.48493 * 109.46984 * 269.99685 * 3 2 1 5 5 H 1.48498 * 109.47116 * 29.99910 * 3 2 1 6 6 H 1.48505 * 109.47164 * 149.99633 * 3 2 1 7 7 C 1.38813 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99974 * 197.35316 * 7 2 1 9 9 N 1.36934 * 119.99986 * 17.35158 * 7 2 1 10 10 C 1.46921 * 120.63094 * 207.68042 * 9 7 2 11 11 C 1.53192 * 108.77730 * 233.61401 * 10 9 7 12 12 C 1.53036 * 109.31243 * 305.36364 * 11 10 9 13 13 C 1.53042 * 109.53796 * 61.36821 * 12 11 10 14 14 H 1.09002 * 109.50002 * 58.61454 * 13 12 11 15 15 N 1.46500 * 109.49956 * 178.68402 * 13 12 11 16 16 C 1.46764 * 124.34567 * 239.93546 * 15 13 12 17 17 C 1.54481 * 105.47117 * 197.03545 * 16 15 13 18 18 C 1.54619 * 101.76603 * 334.58401 * 17 16 15 19 19 C 1.34419 * 124.35169 * 59.95745 * 15 13 12 20 20 O 1.21277 * 124.93732 * 359.60881 * 19 15 13 21 21 C 1.46931 * 120.60381 * 27.70933 * 9 7 2 22 22 H 0.97001 * 120.00381 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.58713 * 113.82493 * 10 9 7 24 24 H 1.09000 * 109.59184 * 353.40440 * 10 9 7 25 25 H 1.09008 * 109.49690 * 185.41683 * 11 10 9 26 26 H 1.08994 * 109.50087 * 65.32292 * 11 10 9 27 27 H 1.08999 * 109.46506 * 301.34689 * 12 11 10 28 28 H 1.09007 * 109.44828 * 181.37998 * 12 11 10 29 29 H 1.09000 * 110.25045 * 78.03654 * 16 15 13 30 30 H 1.09002 * 110.25002 * 316.03431 * 16 15 13 31 31 H 1.09004 * 110.96831 * 216.46238 * 17 16 15 32 32 H 1.09004 * 110.96773 * 92.70427 * 17 16 15 33 33 H 1.09003 * 110.48669 * 143.47189 * 18 17 16 34 34 H 1.08994 * 110.48899 * 266.12079 * 18 17 16 35 35 H 1.09000 * 109.61837 * 6.62070 * 21 9 7 36 36 H 1.08997 * 109.56031 * 246.18715 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3526 10 6 1.8193 -3.6546 0.1821 11 6 2.0746 -4.6101 -0.9877 12 6 0.8190 -4.6904 -1.8589 13 6 0.5009 -3.3054 -2.4272 14 1 1.3493 -2.9480 -3.0108 15 7 -0.6828 -3.3894 -3.2862 16 6 -0.6980 -3.0399 -4.7115 17 6 -2.1885 -2.8608 -5.0760 18 6 -2.8811 -3.7482 -4.0160 19 6 -1.8946 -3.7959 -2.8701 20 8 -2.1587 -4.1489 -1.7403 21 6 0.2281 -2.3344 -1.2741 22 1 -0.4851 0.8400 -0.0004 23 1 1.0470 -4.0686 0.8303 24 1 2.7400 -3.5171 0.7492 25 1 2.3139 -5.6013 -0.6023 26 1 2.9084 -4.2403 -1.5843 27 1 -0.0201 -5.0368 -1.2557 28 1 0.9898 -5.3887 -2.6784 29 1 -0.2594 -3.8444 -5.3019 30 1 -0.1547 -2.1097 -4.8777 31 1 -2.3905 -3.2262 -6.0830 32 1 -2.4930 -1.8194 -4.9722 33 1 -3.8188 -3.2956 -3.6934 34 1 -3.0555 -4.7489 -4.4112 35 1 0.0991 -1.3264 -1.6681 36 1 -0.6741 -2.6403 -0.7445 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334311088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:43 Heat of formation + Delta-G solvation = -37.091867 kcal Electronic energy + Delta-G solvation = -17996.667889 eV Core-core repulsion = 15287.149685 eV Total energy + Delta-G solvation = -2709.518204 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.45844 -38.85896 -37.26341 -35.14847 -33.53202 -31.86483 -29.85367 -28.37479 -27.26662 -24.07146 -23.93908 -22.72719 -21.25378 -19.80731 -18.74815 -17.59314 -17.33959 -16.85348 -16.10139 -15.69485 -15.25363 -14.94263 -14.70313 -14.66693 -14.41303 -14.13246 -13.73431 -13.69051 -13.13627 -12.95807 -12.64231 -12.51434 -12.39272 -12.19592 -12.06510 -11.78144 -11.70077 -11.46869 -11.36827 -10.68465 -10.46206 -9.62211 -8.72238 -7.89675 -5.39330 1.44532 1.45563 1.55961 1.69219 2.15387 2.49245 3.22831 3.49535 3.67900 3.72875 3.98899 4.07288 4.12814 4.19748 4.31547 4.38330 4.56240 4.67950 4.73073 4.78913 4.89056 4.92767 5.03657 5.09603 5.11480 5.16766 5.26067 5.29123 5.44907 5.53723 5.60778 5.86036 6.32603 6.37878 7.07237 7.31391 7.79070 8.33048 9.15625 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.008813 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.761745 B = 3176.370666 C = 3776.458399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.055 4.055 3 Si 0.975 3.025 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.267 4.267 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.135 3.865 11 C -0.117 4.117 12 C -0.113 4.113 13 C 0.140 3.860 14 H 0.088 0.912 15 N -0.616 5.616 16 C 0.093 3.907 17 C -0.117 4.117 18 C -0.145 4.145 19 C 0.491 3.509 20 O -0.587 6.587 21 C 0.183 3.817 22 H 0.249 0.751 23 H -0.002 1.002 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.130 0.870 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.051 0.949 36 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.449 -7.563 -14.251 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.250 4.250 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.397 4.397 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.010 3.990 11 C -0.156 4.156 12 C -0.151 4.151 13 C 0.036 3.964 14 H 0.106 0.894 15 N -0.349 5.349 16 C -0.029 4.029 17 C -0.154 4.154 18 C -0.185 4.185 19 C 0.281 3.719 20 O -0.468 6.468 21 C 0.056 3.944 22 H 0.058 0.942 23 H 0.016 0.984 24 H 0.081 0.919 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.148 0.852 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.144 0.856 35 H 0.069 0.931 36 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges -0.587 -7.600 -13.615 15.604 hybrid contribution 0.034 1.096 0.734 1.319 sum -0.553 -6.504 -12.881 14.441 Atomic orbital electron populations 1.70281 1.07100 1.25859 1.55185 1.25968 0.95994 1.02056 1.00990 0.85159 0.78025 0.78804 0.77825 1.20627 1.22412 1.18879 1.19620 0.93212 0.85750 1.41072 0.90748 1.44310 1.35907 1.02657 1.50425 1.21140 0.97009 0.86194 0.94660 1.21872 0.96979 0.99682 0.97052 1.21687 0.98119 0.95885 0.99458 1.21583 0.86493 0.96678 0.91650 0.89363 1.48645 1.09504 1.64929 1.11826 1.22417 0.99317 1.02012 0.79161 1.22639 0.91951 1.00535 1.00321 1.22364 0.97874 1.04382 0.93898 1.21912 0.84900 0.75585 0.89538 1.90673 1.81620 1.50516 1.23967 1.20694 0.88008 0.96820 0.88895 0.94222 0.98411 0.91882 0.89549 0.91108 0.94106 0.90474 0.88516 0.90539 0.85189 0.90425 0.88184 0.85550 0.93072 0.99504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.02 11.19 21.65 0.24 -58.77 16 2 C -0.05 -3.19 4.91 84.86 0.42 -2.78 16 3 Si 0.97 45.80 29.59 68.60 2.03 47.83 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.27 -15.27 9.58 84.03 0.81 -14.46 16 8 H 0.07 4.06 7.89 -2.91 -0.02 4.04 16 9 N -0.61 -33.02 3.00 -699.09 -2.09 -35.12 16 10 C 0.14 6.14 6.52 86.36 0.56 6.70 16 11 C -0.12 -4.12 6.08 30.67 0.19 -3.93 16 12 C -0.11 -4.20 5.15 30.62 0.16 -4.04 16 13 C 0.14 5.68 2.89 45.07 0.13 5.81 16 14 H 0.09 3.37 8.07 -2.39 -0.02 3.35 16 15 N -0.62 -21.15 2.83 -793.58 -2.25 -23.40 16 16 C 0.09 2.04 7.30 86.83 0.63 2.67 16 17 C -0.12 -1.96 7.18 31.65 0.23 -1.73 16 18 C -0.15 -3.31 6.86 30.58 0.21 -3.10 16 19 C 0.49 18.21 7.40 87.90 0.65 18.86 16 20 O -0.59 -28.43 15.09 -3.02 -0.05 -28.48 16 21 C 0.18 9.77 4.66 86.36 0.40 10.17 16 22 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 23 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 24 H 0.06 2.69 7.93 -2.39 -0.02 2.67 16 25 H 0.09 2.51 8.14 -2.38 -0.02 2.50 16 26 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.04 1.77 6.82 -2.39 -0.02 1.76 16 28 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 2.24 8.14 -2.39 -0.02 2.23 16 34 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.05 3.04 6.04 -2.39 -0.01 3.03 16 36 H -0.01 -0.83 6.65 -2.39 -0.02 -0.84 16 Total: -1.00 -78.09 284.67 3.31 -74.78 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.05 Total: 8.98 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 4.38 Total: 14.18 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -4.10 Total: -117.30 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.05 Total: -28.48 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -78.09 3.31 -74.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334311088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.687 kcal (2) G-P(sol) polarization free energy of solvation -78.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds