Wall clock time and date at job start Sun Mar 29 2020 22:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 115.49636 * 2 1 4 4 C 1.52991 * 117.44238 * 145.38645 * 2 1 3 5 5 H 1.09000 * 119.54164 * 354.28123 * 4 2 1 6 6 C 1.54386 * 118.12432 * 199.18705 * 4 2 1 7 7 N 1.48140 * 104.62056 * 270.79317 * 6 4 2 8 8 C 1.34783 * 127.83633 * 219.58423 * 7 6 4 9 9 O 1.21583 * 120.00115 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99656 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99669 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47029 * 180.02562 * 11 10 8 13 13 H 1.08006 * 120.00159 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00120 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00089 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.48146 * 104.32651 * 39.83987 * 7 6 4 21 21 C 1.54278 * 61.50339 * 106.72987 * 4 2 1 22 22 H 1.09006 * 121.82141 * 252.03545 * 21 4 2 23 23 H 1.08993 * 109.46855 * 274.61675 * 1 2 3 24 24 H 1.09001 * 109.46630 * 34.61795 * 1 2 3 25 25 H 1.09002 * 109.47319 * 154.61631 * 1 2 3 26 26 H 1.08993 * 109.47476 * 205.38530 * 3 2 1 27 27 H 1.09001 * 109.47268 * 325.38463 * 3 2 1 28 28 H 1.08997 * 109.47044 * 85.38171 * 3 2 1 29 29 H 1.09007 * 110.41276 * 152.00223 * 6 4 2 30 30 H 1.09003 * 110.50513 * 29.62932 * 6 4 2 31 31 H 0.97003 * 120.00220 * 0.02562 * 10 8 7 32 32 H 1.09003 * 109.46930 * 60.00387 * 11 10 8 33 33 H 1.08996 * 109.47301 * 299.99955 * 11 10 8 34 34 H 0.96998 * 119.99255 * 0.02562 * 15 14 12 35 35 H 1.08997 * 110.40144 * 78.94079 * 20 7 6 36 36 H 1.08997 * 110.40983 * 201.37356 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1886 1.3810 0.0000 4 6 2.2351 -1.1174 0.7713 5 1 1.6454 -1.8142 1.3670 6 6 3.7118 -0.9071 1.1698 7 7 4.4872 -1.4285 0.0203 8 6 5.6293 -2.1436 0.0497 9 8 6.1398 -2.4304 1.1153 10 7 6.2055 -2.5408 -1.1022 11 6 7.4466 -3.3186 -1.0702 12 6 7.8789 -3.6327 -2.4793 13 1 7.2881 -3.2879 -3.3151 14 6 9.0282 -4.3612 -2.7016 15 7 9.7475 -4.7816 -1.6839 16 14 9.5645 -4.7500 -4.4482 17 1 8.9622 -6.0383 -4.8758 18 1 11.0449 -4.8544 -4.4998 19 1 9.1127 -3.6664 -5.3575 20 6 3.7261 -0.9802 -1.1690 21 6 2.2423 -1.1694 -0.7706 22 1 1.6466 -1.8954 -1.3240 23 1 -0.3633 0.0827 1.0243 24 1 -0.3632 0.8458 -0.5838 25 1 -0.3634 -0.9285 -0.4405 26 1 3.1830 1.3093 -0.4405 27 1 1.5817 2.0730 -0.5838 28 1 2.2703 1.7445 1.0243 29 1 3.9457 -1.4705 2.0731 30 1 3.9197 0.1525 1.3193 31 1 5.7984 -2.3117 -1.9523 32 1 7.2791 -4.2477 -0.5255 33 1 8.2249 -2.7405 -0.5721 34 1 9.4691 -4.5793 -0.7770 35 1 3.9346 0.0685 -1.3805 36 1 3.9708 -1.5990 -2.0323 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334539206.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:58 Heat of formation + Delta-G solvation = -1.613322 kcal Electronic energy + Delta-G solvation = -16948.690606 eV Core-core repulsion = 14240.710867 eV Total energy + Delta-G solvation = -2707.979738 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48961 -38.41613 -34.45629 -34.22475 -32.34081 -29.60656 -28.51329 -27.95940 -26.60999 -24.32667 -22.44910 -20.27463 -19.60764 -18.72880 -18.08891 -16.59411 -15.82465 -15.45789 -14.96876 -14.33239 -14.21084 -13.81462 -13.44238 -13.23650 -12.89998 -12.50513 -12.47748 -12.19685 -12.01779 -11.91317 -11.78590 -11.43469 -11.34790 -10.97333 -10.75806 -10.16703 -10.11880 -9.68979 -9.41899 -8.77280 -8.69102 -8.47553 -7.84312 -6.49567 -4.22491 3.07088 3.21938 3.38702 3.42299 3.57996 3.76805 4.32192 4.43081 4.44406 4.51348 4.79127 4.84256 4.94628 5.09422 5.29670 5.34598 5.36657 5.40345 5.56316 5.62779 5.68052 5.74771 5.83085 5.87441 5.96952 6.03117 6.16892 6.35823 6.96714 7.28234 7.39613 7.52069 7.87716 8.30880 8.63166 8.81346 9.26197 9.52162 10.90877 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044757 B = 0.004789 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.454716 B = 5845.333022 C = 6224.766159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.125 4.125 4 C -0.164 4.164 5 H 0.116 0.884 6 C 0.150 3.850 7 N -0.647 5.647 8 C 0.717 3.283 9 O -0.599 6.599 10 N -0.722 5.722 11 C 0.257 3.743 12 C -0.622 4.622 13 H 0.056 0.944 14 C 0.023 3.977 15 N -0.903 5.903 16 Si 1.079 2.921 17 H -0.286 1.286 18 H -0.282 1.282 19 H -0.288 1.288 20 C 0.128 3.872 21 C -0.170 4.170 22 H 0.121 0.879 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.388 0.612 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.273 0.727 35 H 0.074 0.926 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.430 11.016 0.592 21.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.182 4.182 4 C -0.183 4.183 5 H 0.134 0.866 6 C 0.026 3.974 7 N -0.387 5.387 8 C 0.419 3.581 9 O -0.478 6.478 10 N -0.374 5.374 11 C 0.135 3.865 12 C -0.660 4.660 13 H 0.075 0.925 14 C -0.183 4.183 15 N -0.538 5.538 16 Si 0.907 3.093 17 H -0.213 1.213 18 H -0.208 1.208 19 H -0.214 1.214 20 C 0.004 3.996 21 C -0.189 4.189 22 H 0.138 0.862 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.221 0.779 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.665 9.919 0.493 19.400 hybrid contribution -1.508 0.724 0.498 1.745 sum -18.173 10.643 0.991 21.084 Atomic orbital electron populations 1.21314 0.91539 1.02186 1.02011 1.22270 0.94344 0.90751 1.01954 1.21440 1.00851 0.93784 1.02116 1.23841 0.97072 1.02537 0.94887 0.86630 1.21493 0.86906 0.98757 0.90249 1.48370 1.25055 1.57989 1.07255 1.15601 0.78904 0.78237 0.85318 1.90868 1.64737 1.62537 1.29675 1.45527 1.28438 1.57904 1.05536 1.19062 0.79709 0.89774 0.97912 1.22081 1.12646 1.40018 0.91260 0.92536 1.25876 0.92970 0.93357 1.06117 1.70720 1.39649 1.43189 1.00195 0.83401 0.76510 0.76170 0.73240 1.21290 1.20776 1.21390 1.21808 0.88459 0.99923 0.89384 1.24642 0.96685 1.02278 0.95298 0.86152 0.91955 0.91828 0.92302 0.91646 0.92000 0.91842 0.89759 0.91376 0.77873 0.96741 0.96695 0.91621 0.90840 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.85 37.16 0.37 -0.44 16 2 C -0.09 -0.83 2.77 -152.28 -0.42 -1.25 16 3 C -0.13 -1.04 8.49 37.16 0.32 -0.72 16 4 C -0.16 -1.81 6.67 -89.23 -0.60 -2.40 16 5 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 6 C 0.15 2.09 6.55 -2.41 -0.02 2.07 16 7 N -0.65 -10.92 3.31 -174.77 -0.58 -11.50 16 8 C 0.72 16.02 8.57 -86.91 -0.74 15.27 16 9 O -0.60 -15.79 16.61 5.29 0.09 -15.71 16 10 N -0.72 -16.54 5.53 -66.41 -0.37 -16.90 16 11 C 0.26 7.09 4.74 -5.19 -0.02 7.06 16 12 C -0.62 -17.52 9.28 -34.44 -0.32 -17.84 16 13 H 0.06 1.51 7.60 -52.48 -0.40 1.11 16 14 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 15 N -0.90 -27.78 13.65 55.43 0.76 -27.02 16 16 Si 1.08 24.76 29.90 -169.99 -5.08 19.68 16 17 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 20 C 0.13 1.64 6.44 -2.19 -0.01 1.62 16 21 C -0.17 -1.83 6.92 -86.77 -0.60 -2.43 16 22 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.39 7.93 -51.93 -0.41 -0.02 16 25 H 0.06 0.41 7.96 -51.93 -0.41 0.00 16 26 H 0.06 0.61 5.33 -51.93 -0.28 0.33 16 27 H 0.06 0.43 7.93 -51.93 -0.41 0.02 16 28 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.08 1.29 7.88 -51.93 -0.41 0.88 16 30 H 0.07 0.86 6.77 -51.93 -0.35 0.51 16 31 H 0.39 7.82 6.72 -40.82 -0.27 7.55 16 32 H 0.01 0.44 8.01 -51.93 -0.42 0.02 16 33 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 34 H 0.27 8.54 7.22 -40.82 -0.29 8.25 16 35 H 0.07 0.85 6.06 -51.93 -0.31 0.54 16 36 H 0.08 1.02 6.86 -51.93 -0.36 0.67 16 LS Contribution 292.85 15.07 4.41 4.41 Total: -1.00 -33.66 292.85 -8.15 -41.82 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.23 Total: 3.73 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.15 Total: 1.50 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.19 Total: -55.43 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.09 Total: -15.71 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.08 Total: 19.68 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.66 -8.15 -41.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334539206.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.202 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds