Wall clock time and date at job start Sun Mar 29 2020 22:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 115.49636 * 2 1 4 4 C 1.52991 * 117.44238 * 145.38645 * 2 1 3 5 5 H 1.09000 * 119.54164 * 354.28123 * 4 2 1 6 6 C 1.54386 * 118.12432 * 199.18705 * 4 2 1 7 7 N 1.48140 * 104.62056 * 270.79317 * 6 4 2 8 8 C 1.34783 * 127.83633 * 219.58423 * 7 6 4 9 9 O 1.21583 * 120.00115 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99656 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99669 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47029 * 180.02562 * 11 10 8 13 13 H 1.08006 * 120.00159 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00120 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00089 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.48146 * 104.32651 * 39.83987 * 7 6 4 21 21 C 1.54278 * 61.50339 * 106.72987 * 4 2 1 22 22 H 1.09006 * 121.82141 * 252.03545 * 21 4 2 23 23 H 1.08993 * 109.46855 * 274.61675 * 1 2 3 24 24 H 1.09001 * 109.46630 * 34.61795 * 1 2 3 25 25 H 1.09002 * 109.47319 * 154.61631 * 1 2 3 26 26 H 1.08993 * 109.47476 * 205.38530 * 3 2 1 27 27 H 1.09001 * 109.47268 * 325.38463 * 3 2 1 28 28 H 1.08997 * 109.47044 * 85.38171 * 3 2 1 29 29 H 1.09007 * 110.41276 * 152.00223 * 6 4 2 30 30 H 1.09003 * 110.50513 * 29.62932 * 6 4 2 31 31 H 0.97003 * 120.00220 * 0.02562 * 10 8 7 32 32 H 1.09003 * 109.46930 * 60.00387 * 11 10 8 33 33 H 1.08996 * 109.47301 * 299.99955 * 11 10 8 34 34 H 0.96998 * 119.99255 * 0.02562 * 15 14 12 35 35 H 1.08997 * 110.40144 * 78.94079 * 20 7 6 36 36 H 1.08997 * 110.40983 * 201.37356 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1886 1.3810 0.0000 4 6 2.2351 -1.1174 0.7713 5 1 1.6454 -1.8142 1.3670 6 6 3.7118 -0.9071 1.1698 7 7 4.4872 -1.4285 0.0203 8 6 5.6293 -2.1436 0.0497 9 8 6.1398 -2.4304 1.1153 10 7 6.2055 -2.5408 -1.1022 11 6 7.4466 -3.3186 -1.0702 12 6 7.8789 -3.6327 -2.4793 13 1 7.2881 -3.2879 -3.3151 14 6 9.0282 -4.3612 -2.7016 15 7 9.7475 -4.7816 -1.6839 16 14 9.5645 -4.7500 -4.4482 17 1 8.9622 -6.0383 -4.8758 18 1 11.0449 -4.8544 -4.4998 19 1 9.1127 -3.6664 -5.3575 20 6 3.7261 -0.9802 -1.1690 21 6 2.2423 -1.1694 -0.7706 22 1 1.6466 -1.8954 -1.3240 23 1 -0.3633 0.0827 1.0243 24 1 -0.3632 0.8458 -0.5838 25 1 -0.3634 -0.9285 -0.4405 26 1 3.1830 1.3093 -0.4405 27 1 1.5817 2.0730 -0.5838 28 1 2.2703 1.7445 1.0243 29 1 3.9457 -1.4705 2.0731 30 1 3.9197 0.1525 1.3193 31 1 5.7984 -2.3117 -1.9523 32 1 7.2791 -4.2477 -0.5255 33 1 8.2249 -2.7405 -0.5721 34 1 9.4691 -4.5793 -0.7770 35 1 3.9346 0.0685 -1.3805 36 1 3.9708 -1.5990 -2.0323 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334539206.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:57 Heat of formation + Delta-G solvation = -24.464936 kcal Electronic energy + Delta-G solvation = -16949.681526 eV Core-core repulsion = 14240.710867 eV Total energy + Delta-G solvation = -2708.970659 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.70757 -39.96968 -36.48776 -35.55238 -34.37770 -30.66651 -29.64091 -28.78142 -28.34486 -25.77718 -24.45284 -21.36084 -21.19382 -19.95361 -19.44100 -18.52125 -17.22284 -16.96959 -16.19330 -15.70845 -15.54761 -15.27655 -15.08740 -14.66274 -14.31705 -14.17290 -13.60698 -13.24386 -13.19317 -13.10398 -12.88300 -12.77865 -12.56463 -12.37149 -12.08152 -11.88752 -11.56568 -10.96070 -10.79739 -10.77292 -10.42077 -10.23906 -9.57160 -8.81907 -6.57167 1.52445 1.57764 1.65391 1.83090 2.02552 2.37975 2.54531 3.07064 3.10161 3.41532 3.52997 3.73287 4.03186 4.10936 4.16729 4.38406 4.51076 4.62409 4.70159 4.71715 4.83643 4.92661 4.95548 5.05317 5.08261 5.09403 5.14630 5.17901 5.32933 5.40213 5.48851 5.51726 6.03798 6.08761 6.32051 6.98945 7.26222 7.52454 8.57706 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044757 B = 0.004789 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.454716 B = 5845.333022 C = 6224.766159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.065 4.065 3 C -0.129 4.129 4 C -0.172 4.172 5 H 0.123 0.877 6 C 0.143 3.857 7 N -0.643 5.643 8 C 0.712 3.288 9 O -0.649 6.649 10 N -0.717 5.717 11 C 0.273 3.727 12 C -0.629 4.629 13 H 0.075 0.925 14 C -0.031 4.031 15 N -0.929 5.929 16 Si 1.135 2.865 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.260 1.260 20 C 0.120 3.880 21 C -0.173 4.173 22 H 0.133 0.867 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.403 0.597 32 H -0.019 1.019 33 H -0.018 1.018 34 H 0.254 0.746 35 H 0.092 0.908 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.818 12.385 -1.544 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.066 4.066 3 C -0.186 4.186 4 C -0.191 4.191 5 H 0.141 0.859 6 C 0.020 3.980 7 N -0.381 5.381 8 C 0.414 3.586 9 O -0.532 6.532 10 N -0.371 5.371 11 C 0.149 3.851 12 C -0.667 4.667 13 H 0.093 0.907 14 C -0.230 4.230 15 N -0.564 5.564 16 Si 0.954 3.046 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.184 1.184 20 C -0.001 4.001 21 C -0.192 4.192 22 H 0.151 0.849 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.239 0.761 32 H -0.001 1.001 33 H 0.000 1.000 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.153 11.348 -1.652 22.323 hybrid contribution -0.858 0.379 1.244 1.558 sum -20.011 11.727 -0.408 23.198 Atomic orbital electron populations 1.21366 0.89572 1.03098 1.02948 1.22413 0.95486 0.90134 0.98521 1.21505 1.00544 0.93707 1.02802 1.23783 0.95370 1.04805 0.95157 0.85929 1.21707 0.88646 0.99012 0.88586 1.48390 1.23406 1.56088 1.10209 1.15745 0.80117 0.78568 0.84185 1.90822 1.66645 1.64525 1.31245 1.45148 1.27374 1.57832 1.06718 1.18576 0.80812 0.88343 0.97382 1.22411 1.12953 1.39705 0.91587 0.90663 1.27707 0.93046 0.92543 1.09665 1.70870 1.40711 1.44964 0.99901 0.82738 0.76109 0.77521 0.68276 1.19527 1.20929 1.18413 1.22103 0.89448 1.00830 0.87745 1.24680 0.95580 1.04238 0.94746 0.84945 0.91111 0.90309 0.91963 0.92736 0.90079 0.91279 0.91961 0.89786 0.76090 1.00147 1.00017 0.93702 0.88999 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.85 71.98 0.71 -0.44 16 2 C -0.06 -0.95 2.77 -50.74 -0.14 -1.09 16 3 C -0.13 -1.71 8.49 71.98 0.61 -1.10 16 4 C -0.17 -3.46 6.67 -9.89 -0.07 -3.53 16 5 H 0.12 2.32 8.14 -2.39 -0.02 2.31 16 6 C 0.14 3.93 6.55 86.53 0.57 4.50 16 7 N -0.64 -21.65 3.31 -825.10 -2.73 -24.38 16 8 C 0.71 32.79 8.57 179.05 1.53 34.33 16 9 O -0.65 -36.06 16.61 -3.98 -0.07 -36.13 16 10 N -0.72 -33.61 5.53 -482.29 -2.66 -36.28 16 11 C 0.27 15.69 4.74 85.63 0.41 16.10 16 12 C -0.63 -35.64 9.28 25.60 0.24 -35.41 16 13 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 14 C -0.03 -1.79 5.46 84.65 0.46 -1.33 16 15 N -0.93 -58.70 13.65 21.45 0.29 -58.41 16 16 Si 1.13 48.60 29.90 68.60 2.05 50.66 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 20 C 0.12 2.88 6.44 86.67 0.56 3.44 16 21 C -0.17 -3.28 6.92 -8.30 -0.06 -3.34 16 22 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 23 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.08 0.61 7.93 -2.39 -0.02 0.60 16 25 H 0.06 0.63 7.96 -2.39 -0.02 0.61 16 26 H 0.05 0.86 5.33 -2.39 -0.01 0.84 16 27 H 0.08 0.80 7.93 -2.39 -0.02 0.78 16 28 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 29 H 0.06 1.98 7.88 -2.38 -0.02 1.96 16 30 H 0.08 2.04 6.77 -2.39 -0.02 2.02 16 31 H 0.40 16.12 6.72 -92.71 -0.62 15.50 16 32 H -0.02 -1.23 8.01 -2.39 -0.02 -1.25 16 33 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 34 H 0.25 16.72 7.22 -92.71 -0.67 16.05 16 35 H 0.09 1.91 6.06 -2.39 -0.01 1.89 16 36 H 0.08 1.93 6.86 -2.39 -0.02 1.91 16 Total: -1.00 -75.80 292.85 2.26 -73.54 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.56 Total: 18.87 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 4.82 Total: 12.14 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -5.10 Total: -119.07 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.07 Total: -36.13 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.05 Total: 50.66 kcal Total: -75.80 2.26 -73.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334539206.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.073 kcal (2) G-P(sol) polarization free energy of solvation -75.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds