Wall clock time and date at job start Sun Mar 29 2020 22:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.64275 * 2 1 4 4 C 1.34777 * 119.99873 * 299.58136 * 3 2 1 5 5 O 1.21592 * 119.99797 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99902 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99966 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47273 * 180.02562 * 7 6 4 9 9 H 1.08002 * 119.99869 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99922 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99914 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00270 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47113 * 90.00019 * 12 10 8 14 14 H 1.48499 * 109.46948 * 209.99865 * 12 10 8 15 15 H 1.48497 * 109.46897 * 330.00049 * 12 10 8 16 16 C 1.53025 * 109.64401 * 239.57950 * 2 1 3 17 17 C 1.50069 * 110.14566 * 190.67115 * 16 2 1 18 18 C 1.29443 * 124.08088 * 17.12800 * 17 16 2 19 19 C 1.50069 * 124.07309 * 359.50829 * 18 17 16 20 20 C 1.53039 * 110.13837 * 17.16842 * 19 18 17 21 21 H 1.09000 * 109.46659 * 59.99723 * 1 2 3 22 22 H 1.08998 * 109.46730 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47065 * 300.00352 * 1 2 3 24 24 H 0.96995 * 120.00050 * 119.30251 * 3 2 1 25 25 H 0.96999 * 120.00050 * 0.02562 * 6 4 3 26 26 H 1.09005 * 109.47136 * 300.00071 * 7 6 4 27 27 H 1.08996 * 109.47174 * 59.99413 * 7 6 4 28 28 H 0.96998 * 120.00171 * 179.97438 * 11 10 8 29 29 H 1.09001 * 109.35399 * 310.87443 * 16 2 1 30 30 H 1.08997 * 109.35581 * 70.60043 * 16 2 1 31 31 H 1.08005 * 117.95708 * 197.15315 * 17 16 2 32 32 H 1.07993 * 117.96592 * 179.53567 * 18 17 16 33 33 H 1.08992 * 109.35765 * 137.36086 * 19 18 17 34 34 H 1.09002 * 109.36158 * 257.08884 * 19 18 17 35 35 H 1.08996 * 109.63821 * 190.85854 * 20 19 18 36 36 H 1.08999 * 109.66030 * 70.22059 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0225 1.3798 0.0000 4 6 1.7063 2.2081 -1.0151 5 8 1.0128 1.8101 -1.9310 6 7 2.1590 3.4776 -1.0148 7 6 1.8158 4.3778 -2.1185 8 6 2.4417 5.7276 -1.8790 9 1 3.0355 5.8979 -0.9930 10 6 2.2565 6.7450 -2.7909 11 7 2.8023 7.9230 -2.5816 12 14 1.2301 6.4501 -4.3236 13 1 -0.1894 6.7812 -4.0400 14 1 1.7285 7.3111 -5.4261 15 1 1.3355 5.0238 -4.7230 16 6 2.0444 -0.7297 -1.2428 17 6 3.5221 -0.9655 -1.1291 18 6 4.1845 -0.8956 -0.0192 19 6 3.5691 -0.5586 1.3074 20 6 2.0501 -0.7330 1.2431 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 2.5727 1.6984 0.7325 25 1 2.7126 3.7950 -0.2843 26 1 2.1913 3.9646 -3.0546 27 1 0.7326 4.4844 -2.1770 28 1 2.6723 8.6387 -3.2233 29 1 1.5321 -1.6871 -1.3375 30 1 1.8442 -0.1237 -2.1263 31 1 4.0669 -1.2082 -2.0295 32 1 5.2461 -1.0915 -0.0497 33 1 3.9764 -1.2192 2.0728 34 1 3.8019 0.4755 1.5615 35 1 1.5943 -0.3072 2.1369 36 1 1.8052 -1.7928 1.1726 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334703797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:22 Heat of formation + Delta-G solvation = -24.439281 kcal Electronic energy + Delta-G solvation = -17365.800419 eV Core-core repulsion = 14656.830873 eV Total energy + Delta-G solvation = -2708.969546 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28193 -37.92859 -34.31120 -33.61118 -32.39428 -30.87160 -30.84448 -27.51334 -26.51148 -23.26673 -22.46806 -20.82116 -20.03549 -18.27485 -17.70081 -16.40623 -15.97100 -15.14688 -14.81843 -14.37270 -14.22346 -14.01124 -13.70995 -13.02329 -12.96498 -12.53488 -12.39208 -12.31143 -12.12861 -11.83526 -11.64727 -11.47422 -10.93573 -10.73443 -10.44232 -10.29885 -9.92218 -9.44975 -9.28151 -8.87700 -8.74164 -8.66430 -7.93218 -6.17768 -4.19220 2.36612 3.29161 3.33238 3.39818 3.45813 3.89819 4.37140 4.59224 4.68898 4.84990 5.03164 5.17931 5.18779 5.34288 5.35562 5.42974 5.67433 5.71129 5.81304 5.86031 5.97626 6.01465 6.16286 6.31503 6.49404 6.71249 6.80677 6.99697 7.04260 7.16872 7.32701 7.48348 7.67324 8.33399 8.75570 8.88666 9.30872 9.45501 10.94353 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038364 B = 0.005734 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.670350 B = 4881.919054 C = 5062.921292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.199 3.801 3 N -0.743 5.743 4 C 0.698 3.302 5 O -0.602 6.602 6 N -0.725 5.725 7 C 0.240 3.760 8 C -0.541 4.541 9 H 0.078 0.922 10 C 0.077 3.923 11 N -0.894 5.894 12 Si 0.877 3.123 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.260 1.260 16 C -0.109 4.109 17 C -0.136 4.136 18 C -0.170 4.170 19 C -0.087 4.087 20 C -0.121 4.121 21 H 0.083 0.917 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.390 0.610 25 H 0.391 0.609 26 H 0.022 0.978 27 H 0.017 0.983 28 H 0.267 0.733 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 -17.829 7.954 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.112 3.888 3 N -0.400 5.400 4 C 0.398 3.602 5 O -0.482 6.482 6 N -0.377 5.377 7 C 0.117 3.883 8 C -0.579 4.579 9 H 0.096 0.904 10 C -0.127 4.127 11 N -0.532 5.532 12 Si 0.704 3.296 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.184 1.184 16 C -0.147 4.147 17 C -0.154 4.154 18 C -0.188 4.188 19 C -0.125 4.125 20 C -0.159 4.159 21 H 0.102 0.898 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.224 0.776 25 H 0.223 0.777 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.635 -17.969 6.998 19.294 hybrid contribution 0.206 0.371 -0.150 0.451 sum -0.429 -17.598 6.848 18.888 Atomic orbital electron populations 1.22229 0.94458 1.01674 1.03771 1.20004 0.93523 0.80632 0.94679 1.45248 1.57918 1.11564 1.25297 1.16091 0.80490 0.81178 0.82399 1.90778 1.43739 1.76212 1.37449 1.45415 1.54958 1.09908 1.27429 1.19315 0.95714 0.88230 0.85057 1.21116 1.33564 0.93679 1.09560 0.90376 1.24784 0.95201 0.94680 0.97989 1.69884 1.44081 1.02583 1.36653 0.86807 0.80797 0.79227 0.82803 1.19885 1.20988 1.18439 1.21003 0.92730 1.00470 1.00470 1.22061 0.96467 0.99397 0.97507 1.21888 0.99286 1.03067 0.94555 1.20384 0.94795 1.01510 0.95763 1.21910 0.95668 1.00982 0.97331 0.89799 0.92459 0.92852 0.77557 0.77652 0.96036 0.96462 0.92325 0.90613 0.88074 0.88370 0.88366 0.91137 0.91079 0.91118 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.43 37.16 0.31 -1.82 16 2 C 0.20 2.54 0.67 -131.60 -0.09 2.45 16 3 N -0.74 -10.90 4.58 -52.21 -0.24 -11.14 16 4 C 0.70 13.69 7.96 -86.92 -0.69 13.00 16 5 O -0.60 -13.64 12.57 5.28 0.07 -13.58 16 6 N -0.73 -15.18 5.55 -66.42 -0.37 -15.55 16 7 C 0.24 6.03 4.50 -5.20 -0.02 6.01 16 8 C -0.54 -15.10 9.83 -34.44 -0.34 -15.44 16 9 H 0.08 2.27 7.84 -52.49 -0.41 1.85 16 10 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 11 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 12 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 16 C -0.11 -1.48 4.81 -28.17 -0.14 -1.61 16 17 C -0.14 -1.71 9.68 -35.90 -0.35 -2.06 16 18 C -0.17 -1.88 9.74 -35.90 -0.35 -2.23 16 19 C -0.09 -0.82 5.67 -28.17 -0.16 -0.98 16 20 C -0.12 -1.16 5.02 -26.51 -0.13 -1.29 16 21 H 0.08 1.38 6.21 -51.93 -0.32 1.06 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.39 4.84 6.98 -40.82 -0.29 4.56 16 25 H 0.39 7.28 8.34 -40.82 -0.34 6.94 16 26 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 27 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 30 H 0.10 1.74 5.95 -51.93 -0.31 1.43 16 31 H 0.10 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.10 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.65 6.79 -51.93 -0.35 0.30 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.68 8.12 -51.93 -0.42 0.25 16 LS Contribution 286.76 15.07 4.32 4.32 Total: -1.00 -31.75 286.76 -7.50 -39.26 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.33 Total: 7.53 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.05 Total: -1.86 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.17 Total: -52.77 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.07 Total: -13.58 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.75 -7.50 -39.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334703797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.817 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds