Wall clock time and date at job start Sun Mar 29 2020 22:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.64275 * 2 1 4 4 C 1.34777 * 119.99873 * 299.58136 * 3 2 1 5 5 O 1.21592 * 119.99797 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99902 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99966 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47273 * 180.02562 * 7 6 4 9 9 H 1.08002 * 119.99869 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99922 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99914 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00270 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47113 * 90.00019 * 12 10 8 14 14 H 1.48499 * 109.46948 * 209.99865 * 12 10 8 15 15 H 1.48497 * 109.46897 * 330.00049 * 12 10 8 16 16 C 1.53025 * 109.64401 * 239.57950 * 2 1 3 17 17 C 1.50069 * 110.14566 * 190.67115 * 16 2 1 18 18 C 1.29443 * 124.08088 * 17.12800 * 17 16 2 19 19 C 1.50069 * 124.07309 * 359.50829 * 18 17 16 20 20 C 1.53039 * 110.13837 * 17.16842 * 19 18 17 21 21 H 1.09000 * 109.46659 * 59.99723 * 1 2 3 22 22 H 1.08998 * 109.46730 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47065 * 300.00352 * 1 2 3 24 24 H 0.96995 * 120.00050 * 119.30251 * 3 2 1 25 25 H 0.96999 * 120.00050 * 0.02562 * 6 4 3 26 26 H 1.09005 * 109.47136 * 300.00071 * 7 6 4 27 27 H 1.08996 * 109.47174 * 59.99413 * 7 6 4 28 28 H 0.96998 * 120.00171 * 179.97438 * 11 10 8 29 29 H 1.09001 * 109.35399 * 310.87443 * 16 2 1 30 30 H 1.08997 * 109.35581 * 70.60043 * 16 2 1 31 31 H 1.08005 * 117.95708 * 197.15315 * 17 16 2 32 32 H 1.07993 * 117.96592 * 179.53567 * 18 17 16 33 33 H 1.08992 * 109.35765 * 137.36086 * 19 18 17 34 34 H 1.09002 * 109.36158 * 257.08884 * 19 18 17 35 35 H 1.08996 * 109.63821 * 190.85854 * 20 19 18 36 36 H 1.08999 * 109.66030 * 70.22059 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0225 1.3798 0.0000 4 6 1.7063 2.2081 -1.0151 5 8 1.0128 1.8101 -1.9310 6 7 2.1590 3.4776 -1.0148 7 6 1.8158 4.3778 -2.1185 8 6 2.4417 5.7276 -1.8790 9 1 3.0355 5.8979 -0.9930 10 6 2.2565 6.7450 -2.7909 11 7 2.8023 7.9230 -2.5816 12 14 1.2301 6.4501 -4.3236 13 1 -0.1894 6.7812 -4.0400 14 1 1.7285 7.3111 -5.4261 15 1 1.3355 5.0238 -4.7230 16 6 2.0444 -0.7297 -1.2428 17 6 3.5221 -0.9655 -1.1291 18 6 4.1845 -0.8956 -0.0192 19 6 3.5691 -0.5586 1.3074 20 6 2.0501 -0.7330 1.2431 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 2.5727 1.6984 0.7325 25 1 2.7126 3.7950 -0.2843 26 1 2.1913 3.9646 -3.0546 27 1 0.7326 4.4844 -2.1770 28 1 2.6723 8.6387 -3.2233 29 1 1.5321 -1.6871 -1.3375 30 1 1.8442 -0.1237 -2.1263 31 1 4.0669 -1.2082 -2.0295 32 1 5.2461 -1.0915 -0.0497 33 1 3.9764 -1.2192 2.0728 34 1 3.8019 0.4755 1.5615 35 1 1.5943 -0.3072 2.1369 36 1 1.8052 -1.7928 1.1726 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334703797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:22 Heat of formation + Delta-G solvation = -46.721763 kcal Electronic energy + Delta-G solvation = -17366.766660 eV Core-core repulsion = 14656.830873 eV Total energy + Delta-G solvation = -2709.935787 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.54980 -39.24192 -36.11109 -34.85974 -34.39731 -32.19918 -31.71014 -29.46671 -27.49922 -24.47093 -24.01247 -22.29015 -21.33594 -19.91081 -18.79549 -18.35204 -17.00878 -16.74167 -16.37064 -15.99096 -15.53609 -15.16091 -14.86386 -14.69709 -14.35342 -14.27754 -13.72587 -13.45944 -13.22314 -13.04950 -12.87677 -12.74113 -12.62930 -12.28539 -11.92418 -11.64283 -11.49599 -11.22421 -10.90872 -10.75031 -10.12095 -9.83770 -9.56176 -8.39501 -6.45939 1.33196 1.34905 1.45799 1.48621 1.95927 2.28985 2.33048 2.96294 3.49539 3.72160 3.81811 4.01572 4.28811 4.44846 4.48489 4.60242 4.71958 4.79319 4.83434 4.90787 4.95626 5.07482 5.07754 5.17294 5.25038 5.27322 5.31585 5.40699 5.63123 5.80117 5.81388 6.04077 6.12478 6.34338 6.56594 7.16505 7.34906 7.79125 8.75401 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038364 B = 0.005734 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.670350 B = 4881.919054 C = 5062.921292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.191 3.809 3 N -0.723 5.723 4 C 0.697 3.303 5 O -0.633 6.633 6 N -0.727 5.727 7 C 0.255 3.745 8 C -0.545 4.545 9 H 0.058 0.942 10 C 0.027 3.973 11 N -0.932 5.932 12 Si 0.938 3.062 13 H -0.264 1.264 14 H -0.272 1.272 15 H -0.262 1.262 16 C -0.105 4.105 17 C -0.164 4.164 18 C -0.157 4.157 19 C -0.091 4.091 20 C -0.112 4.112 21 H 0.044 0.956 22 H 0.082 0.918 23 H 0.060 0.940 24 H 0.404 0.596 25 H 0.402 0.598 26 H 0.007 0.993 27 H 0.008 0.992 28 H 0.272 0.728 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.050 -19.467 9.316 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.105 3.895 3 N -0.380 5.380 4 C 0.397 3.603 5 O -0.515 6.515 6 N -0.381 5.381 7 C 0.130 3.870 8 C -0.583 4.583 9 H 0.076 0.924 10 C -0.173 4.173 11 N -0.571 5.571 12 Si 0.762 3.238 13 H -0.189 1.189 14 H -0.197 1.197 15 H -0.187 1.187 16 C -0.143 4.143 17 C -0.182 4.182 18 C -0.175 4.175 19 C -0.127 4.127 20 C -0.149 4.149 21 H 0.063 0.937 22 H 0.101 0.899 23 H 0.079 0.921 24 H 0.241 0.759 25 H 0.236 0.764 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.646 -19.638 8.414 21.374 hybrid contribution 0.269 0.824 -0.496 0.999 sum -0.376 -18.814 7.918 20.416 Atomic orbital electron populations 1.22181 0.94658 1.02868 1.02101 1.20304 0.93489 0.79440 0.96315 1.45142 1.57072 1.11752 1.24039 1.16221 0.80126 0.80964 0.83035 1.90773 1.45054 1.76682 1.39034 1.45162 1.55736 1.10257 1.26936 1.18872 0.94617 0.87619 0.85863 1.21296 1.33173 0.94981 1.08867 0.92400 1.25576 0.96305 0.94429 1.01003 1.69980 1.45504 1.03527 1.38067 0.85851 0.79577 0.79007 0.79407 1.18920 1.19739 1.18652 1.20892 0.93906 1.00489 0.99040 1.22031 0.96002 1.01980 0.98236 1.22178 0.99818 1.00590 0.94865 1.20499 0.94542 1.02429 0.95279 1.21903 0.95761 1.01458 0.95819 0.93737 0.89916 0.92092 0.75925 0.76379 0.97544 0.97449 0.91847 0.89162 0.92369 0.88939 0.87266 0.88463 0.90602 0.89278 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 8.43 71.98 0.61 -3.35 16 2 C 0.19 4.52 0.67 3.74 0.00 4.52 16 3 N -0.72 -20.23 4.58 -437.35 -2.00 -22.23 16 4 C 0.70 27.30 7.96 179.06 1.42 28.72 16 5 O -0.63 -29.34 12.57 -4.01 -0.05 -29.39 16 6 N -0.73 -30.52 5.55 -482.30 -2.68 -33.20 16 7 C 0.25 12.96 4.50 85.63 0.38 13.35 16 8 C -0.55 -30.81 9.83 25.60 0.25 -30.56 16 9 H 0.06 3.43 7.84 -2.91 -0.02 3.40 16 10 C 0.03 1.56 5.47 84.65 0.46 2.02 16 11 N -0.93 -56.36 13.96 21.45 0.30 -56.06 16 12 Si 0.94 45.02 27.47 68.60 1.88 46.90 16 13 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 15 H -0.26 -12.59 6.54 99.48 0.65 -11.94 16 16 C -0.11 -2.79 4.81 29.66 0.14 -2.65 16 17 C -0.16 -3.94 9.68 27.04 0.26 -3.68 16 18 C -0.16 -3.05 9.74 27.04 0.26 -2.78 16 19 C -0.09 -1.33 5.67 29.66 0.17 -1.16 16 20 C -0.11 -1.70 5.02 30.74 0.15 -1.55 16 21 H 0.04 1.47 6.21 -2.39 -0.01 1.46 16 22 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.40 9.09 6.98 -92.71 -0.65 8.45 16 25 H 0.40 14.86 8.34 -92.71 -0.77 14.09 16 26 H 0.01 0.36 7.20 -2.38 -0.02 0.34 16 27 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.09 2.03 8.11 -2.39 -0.02 2.01 16 30 H 0.06 2.06 5.95 -2.39 -0.01 2.05 16 31 H 0.09 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.11 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.09 6.79 -2.39 -0.02 1.08 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.20 8.12 -2.39 -0.02 1.19 16 Total: -1.00 -69.45 286.76 1.18 -68.27 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.39 Total: 22.83 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 4.12 Total: 2.88 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.38 Total: -111.49 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.05 Total: -29.39 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.90 kcal Total: -69.45 1.18 -68.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334703797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.546 kcal (2) G-P(sol) polarization free energy of solvation -69.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds