Wall clock time and date at job start Sun Mar 29 2020 22:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99495 * 2 1 4 4 N 1.46500 * 109.46760 * 125.00350 * 3 2 1 5 5 C 1.34773 * 119.99664 * 179.97438 * 4 3 2 6 6 O 1.21587 * 120.00215 * 4.97934 * 5 4 3 7 7 N 1.34782 * 119.99971 * 184.98679 * 5 4 3 8 8 C 1.46928 * 120.62925 * 354.76182 * 7 5 4 9 9 C 1.53184 * 108.89692 * 233.52206 * 8 7 5 10 10 C 1.53078 * 109.29479 * 305.57893 * 9 8 7 11 11 C 1.50698 * 109.44113 * 181.23554 * 10 9 8 12 12 H 1.08000 * 120.00414 * 239.79722 * 11 10 9 13 13 C 1.37883 * 120.00006 * 59.79491 * 11 10 9 14 14 N 1.31516 * 119.99808 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00077 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46915 * 60.00375 * 15 13 11 17 17 H 1.48498 * 109.47058 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47357 * 300.00528 * 15 13 11 19 19 C 1.53042 * 109.65463 * 61.15451 * 10 9 8 20 20 C 1.46917 * 120.63344 * 174.75040 * 7 5 4 21 21 H 1.08001 * 120.00606 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.99745 * 179.97438 * 1 2 3 23 23 H 1.07991 * 120.00054 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47219 * 5.00519 * 3 2 1 25 25 H 1.09001 * 109.47261 * 245.00586 * 3 2 1 26 26 H 0.96995 * 120.00077 * 0.02562 * 4 3 2 27 27 H 1.09007 * 109.58326 * 353.38296 * 8 7 5 28 28 H 1.09006 * 109.58195 * 113.65821 * 8 7 5 29 29 H 1.08997 * 109.49909 * 65.39169 * 9 8 7 30 30 H 1.09001 * 109.49532 * 185.48518 * 9 8 7 31 31 H 1.09003 * 109.34539 * 301.13037 * 10 9 8 32 32 H 0.96994 * 119.99752 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.49251 * 178.74940 * 19 10 9 34 34 H 1.08997 * 109.52446 * 58.66866 * 19 10 9 35 35 H 1.08998 * 109.59125 * 246.19698 * 20 7 5 36 36 H 1.09008 * 109.58952 * 6.47926 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.7789 2.4087 1.3328 6 8 3.6518 3.3935 0.6312 7 7 4.7050 2.3937 2.3120 8 6 4.7943 1.2586 3.2406 9 6 4.7309 1.7866 4.6771 10 6 5.8145 2.8499 4.8735 11 6 5.7748 3.3500 6.2945 12 1 5.5932 4.3957 6.4942 13 6 5.9704 2.4725 7.3399 14 7 6.1920 1.1991 7.0968 15 14 5.9220 3.0924 9.1013 16 1 4.5914 3.6905 9.3791 17 1 6.1600 1.9596 10.0315 18 1 6.9765 4.1201 9.2935 19 6 5.5695 4.0176 3.9150 20 6 5.6445 3.5120 2.4709 21 1 -0.5401 0.9353 0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9352 -0.0004 24 1 1.3584 2.1317 0.0897 25 1 2.6211 1.4028 -0.9314 26 1 3.0451 0.5744 1.7351 27 1 3.9624 0.5765 3.0649 28 1 5.7366 0.7331 3.0856 29 1 3.7518 2.2298 4.8590 30 1 4.8939 0.9648 5.3743 31 1 6.7915 2.4117 4.6698 32 1 6.3299 0.5818 7.8322 33 1 6.3295 4.7830 4.0724 34 1 4.5826 4.4411 4.1015 35 1 6.6573 3.1719 2.2550 36 1 5.3751 4.3158 1.7857 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335316831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:33 Heat of formation + Delta-G solvation = -13.301939 kcal Electronic energy + Delta-G solvation = -17146.489377 eV Core-core repulsion = 14438.002782 eV Total energy + Delta-G solvation = -2708.486595 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90788 -37.07185 -35.60993 -33.55268 -32.68943 -30.94254 -29.98652 -26.69492 -25.40876 -22.87703 -22.22610 -20.44363 -20.06970 -18.72481 -17.61349 -16.30084 -16.12141 -15.56511 -14.79346 -14.53114 -14.17066 -13.78859 -13.27126 -13.11008 -12.89297 -12.59413 -12.51753 -12.08977 -11.56094 -11.34364 -11.23526 -10.92370 -10.65923 -10.37071 -10.17404 -9.92341 -9.66447 -9.50819 -9.14742 -8.95711 -8.86294 -8.36906 -7.86930 -6.03016 -4.08941 1.91096 3.19636 3.30061 3.34562 3.37918 3.58636 4.32999 4.41171 4.66495 4.93924 5.26214 5.47036 5.56889 5.64561 5.66998 5.83636 5.96926 6.09220 6.19797 6.29290 6.33812 6.43570 6.49479 6.69652 6.72611 6.89086 7.01490 7.16544 7.24134 7.48114 7.67480 7.93031 8.03729 8.34091 8.41181 8.94300 8.97122 9.56038 11.02462 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034476 B = 0.005503 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.958335 B = 5087.370188 C = 5567.480015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.172 4.172 3 C 0.166 3.834 4 N -0.750 5.750 5 C 0.705 3.295 6 O -0.606 6.606 7 N -0.619 5.619 8 C 0.110 3.890 9 C -0.123 4.123 10 C 0.049 3.951 11 C -0.512 4.512 12 H 0.054 0.946 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.124 4.124 20 C 0.129 3.871 21 H 0.100 0.900 22 H 0.102 0.898 23 H 0.114 0.886 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.397 0.603 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.104 0.896 31 H 0.027 0.973 32 H 0.261 0.739 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.533 -4.256 -10.447 13.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.191 4.191 3 C 0.042 3.958 4 N -0.408 5.408 5 C 0.407 3.593 6 O -0.486 6.486 7 N -0.355 5.355 8 C -0.012 4.012 9 C -0.162 4.162 10 C 0.031 3.969 11 C -0.550 4.550 12 H 0.073 0.927 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.162 4.162 20 C 0.006 3.994 21 H 0.118 0.882 22 H 0.120 0.880 23 H 0.132 0.868 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.234 0.766 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.122 0.878 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.559 -3.706 -10.869 13.224 hybrid contribution -0.057 -0.246 1.380 1.403 sum -6.616 -3.952 -9.489 12.224 Atomic orbital electron populations 1.23950 0.95778 1.02277 0.98762 1.23055 0.96243 0.98313 1.01464 1.20176 0.91379 0.95012 0.89256 1.45260 1.43194 1.20104 1.32274 1.15857 0.79324 0.82961 0.81195 1.90847 1.73238 1.33280 1.51243 1.47414 1.34408 1.22554 1.31110 1.21890 1.00130 0.87197 0.92007 1.22025 0.99538 1.02653 0.91990 1.18624 0.94522 0.90616 0.93178 1.21191 1.48372 0.94610 0.90822 0.92740 1.24956 0.95058 0.94926 0.98996 1.69825 1.49219 1.02501 1.31664 0.86673 0.78570 0.78296 0.84554 1.20354 1.21325 1.20296 1.22016 1.01006 1.00015 0.93186 1.21570 0.90861 0.88218 0.98706 0.88182 0.88018 0.86779 0.91445 0.91182 0.76574 0.92554 0.92040 0.94306 0.87809 0.95465 0.92956 0.92146 0.92969 0.92475 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 14.32 29.01 0.42 -1.00 16 2 C -0.17 -1.62 9.63 -36.03 -0.35 -1.97 16 3 C 0.17 2.05 6.12 -5.19 -0.03 2.02 16 4 N -0.75 -10.97 5.46 -66.41 -0.36 -11.33 16 5 C 0.71 13.14 8.29 -86.92 -0.72 12.42 16 6 O -0.61 -13.10 15.77 5.29 0.08 -13.01 16 7 N -0.62 -11.54 2.97 -178.50 -0.53 -12.07 16 8 C 0.11 1.98 6.38 -3.71 -0.02 1.95 16 9 C -0.12 -2.73 5.16 -26.60 -0.14 -2.86 16 10 C 0.05 1.17 2.06 -91.71 -0.19 0.98 16 11 C -0.51 -13.69 8.56 -34.44 -0.29 -13.98 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 14 N -0.89 -24.39 11.30 55.43 0.63 -23.77 16 15 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C -0.12 -2.59 5.30 -26.61 -0.14 -2.73 16 20 C 0.13 2.44 6.44 -3.72 -0.02 2.42 16 21 H 0.10 0.81 7.84 -52.49 -0.41 0.40 16 22 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 23 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 24 H 0.07 0.89 7.79 -51.93 -0.40 0.48 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.40 5.13 5.95 -40.82 -0.24 4.89 16 27 H 0.06 0.85 5.65 -51.92 -0.29 0.56 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.10 2.53 6.03 -51.93 -0.31 2.22 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.50 7.00 -51.92 -0.36 1.14 16 LS Contribution 293.35 15.07 4.42 4.42 Total: -1.00 -29.83 293.35 -7.75 -37.58 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.38 Total: 3.55 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.59 Total: -1.20 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.27 Total: -47.17 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.83 -7.75 -37.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335316831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.276 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds