Wall clock time and date at job start Sun Mar 29 2020 22:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99495 * 2 1 4 4 N 1.46500 * 109.46760 * 125.00350 * 3 2 1 5 5 C 1.34773 * 119.99664 * 179.97438 * 4 3 2 6 6 O 1.21587 * 120.00215 * 4.97934 * 5 4 3 7 7 N 1.34782 * 119.99971 * 184.98679 * 5 4 3 8 8 C 1.46928 * 120.62925 * 354.76182 * 7 5 4 9 9 C 1.53184 * 108.89692 * 233.52206 * 8 7 5 10 10 C 1.53078 * 109.29479 * 305.57893 * 9 8 7 11 11 C 1.50698 * 109.44113 * 181.23554 * 10 9 8 12 12 H 1.08000 * 120.00414 * 239.79722 * 11 10 9 13 13 C 1.37883 * 120.00006 * 59.79491 * 11 10 9 14 14 N 1.31516 * 119.99808 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00077 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46915 * 60.00375 * 15 13 11 17 17 H 1.48498 * 109.47058 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47357 * 300.00528 * 15 13 11 19 19 C 1.53042 * 109.65463 * 61.15451 * 10 9 8 20 20 C 1.46917 * 120.63344 * 174.75040 * 7 5 4 21 21 H 1.08001 * 120.00606 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.99745 * 179.97438 * 1 2 3 23 23 H 1.07991 * 120.00054 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47219 * 5.00519 * 3 2 1 25 25 H 1.09001 * 109.47261 * 245.00586 * 3 2 1 26 26 H 0.96995 * 120.00077 * 0.02562 * 4 3 2 27 27 H 1.09007 * 109.58326 * 353.38296 * 8 7 5 28 28 H 1.09006 * 109.58195 * 113.65821 * 8 7 5 29 29 H 1.08997 * 109.49909 * 65.39169 * 9 8 7 30 30 H 1.09001 * 109.49532 * 185.48518 * 9 8 7 31 31 H 1.09003 * 109.34539 * 301.13037 * 10 9 8 32 32 H 0.96994 * 119.99752 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.49251 * 178.74940 * 19 10 9 34 34 H 1.08997 * 109.52446 * 58.66866 * 19 10 9 35 35 H 1.08998 * 109.59125 * 246.19698 * 20 7 5 36 36 H 1.09008 * 109.58952 * 6.47926 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.7789 2.4087 1.3328 6 8 3.6518 3.3935 0.6312 7 7 4.7050 2.3937 2.3120 8 6 4.7943 1.2586 3.2406 9 6 4.7309 1.7866 4.6771 10 6 5.8145 2.8499 4.8735 11 6 5.7748 3.3500 6.2945 12 1 5.5932 4.3957 6.4942 13 6 5.9704 2.4725 7.3399 14 7 6.1920 1.1991 7.0968 15 14 5.9220 3.0924 9.1013 16 1 4.5914 3.6905 9.3791 17 1 6.1600 1.9596 10.0315 18 1 6.9765 4.1201 9.2935 19 6 5.5695 4.0176 3.9150 20 6 5.6445 3.5120 2.4709 21 1 -0.5401 0.9353 0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9352 -0.0004 24 1 1.3584 2.1317 0.0897 25 1 2.6211 1.4028 -0.9314 26 1 3.0451 0.5744 1.7351 27 1 3.9624 0.5765 3.0649 28 1 5.7366 0.7331 3.0856 29 1 3.7518 2.2298 4.8590 30 1 4.8939 0.9648 5.3743 31 1 6.7915 2.4117 4.6698 32 1 6.3299 0.5818 7.8322 33 1 6.3295 4.7830 4.0724 34 1 4.5826 4.4411 4.1015 35 1 6.6573 3.1719 2.2550 36 1 5.3751 4.3158 1.7857 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335316831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:32 Heat of formation + Delta-G solvation = -31.438721 kcal Electronic energy + Delta-G solvation = -17147.275847 eV Core-core repulsion = 14438.002782 eV Total energy + Delta-G solvation = -2709.273065 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36557 -38.63307 -36.75403 -35.34270 -33.91766 -32.61118 -31.60783 -28.25792 -26.77584 -24.57396 -23.85094 -21.75812 -21.25554 -20.15964 -19.05865 -18.24224 -17.43052 -16.82443 -16.54206 -15.92687 -15.40589 -15.23813 -14.88692 -14.49403 -14.43745 -14.12800 -13.93780 -13.33133 -13.18526 -13.09974 -12.78309 -12.47375 -12.13549 -12.02938 -11.97015 -11.49247 -11.28637 -10.99089 -10.78640 -10.57458 -10.38554 -10.12256 -9.37849 -8.06814 -6.19832 1.14541 1.43714 1.44177 1.51584 1.91573 2.12566 2.45285 3.02883 3.19682 3.87184 4.11328 4.19477 4.24013 4.36051 4.47638 4.58075 4.59986 4.70672 4.75459 4.89228 4.99349 5.01138 5.21680 5.23890 5.43888 5.45231 5.51814 5.65586 5.67354 5.81329 5.99727 6.06871 6.14103 6.40867 6.89069 6.97492 7.47658 7.54778 8.96415 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034476 B = 0.005503 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.958335 B = 5087.370188 C = 5567.480015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.182 4.182 3 C 0.164 3.836 4 N -0.736 5.736 5 C 0.701 3.299 6 O -0.638 6.638 7 N -0.622 5.622 8 C 0.121 3.879 9 C -0.114 4.114 10 C 0.045 3.955 11 C -0.537 4.537 12 H 0.046 0.954 13 C 0.019 3.981 14 N -0.911 5.911 15 Si 0.948 3.052 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.275 1.275 19 C -0.114 4.114 20 C 0.134 3.866 21 H 0.099 0.901 22 H 0.123 0.877 23 H 0.130 0.870 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.407 0.593 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.082 0.918 31 H 0.006 0.994 32 H 0.262 0.738 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 -5.248 -10.822 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.201 4.201 3 C 0.040 3.960 4 N -0.394 5.394 5 C 0.402 3.598 6 O -0.521 6.521 7 N -0.358 5.358 8 C -0.001 4.001 9 C -0.153 4.153 10 C 0.027 3.973 11 C -0.575 4.575 12 H 0.064 0.936 13 C -0.180 4.180 14 N -0.551 5.551 15 Si 0.774 3.226 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.200 1.200 19 C -0.152 4.152 20 C 0.011 3.989 21 H 0.117 0.883 22 H 0.141 0.859 23 H 0.148 0.852 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.246 0.754 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.100 0.900 31 H 0.024 0.976 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.358 -4.727 -11.248 14.248 hybrid contribution 0.144 0.071 1.488 1.497 sum -7.215 -4.657 -9.760 13.000 Atomic orbital electron populations 1.24176 0.95489 1.03313 0.96531 1.22953 0.96474 0.97267 1.03363 1.20299 0.90895 0.96558 0.88206 1.45243 1.42318 1.19109 1.32747 1.16039 0.79489 0.83441 0.80830 1.90822 1.74149 1.34786 1.52368 1.47414 1.34500 1.22547 1.31364 1.21767 1.02020 0.87198 0.89149 1.21794 0.97889 1.01217 0.94420 1.18607 0.94002 0.92015 0.92683 1.21532 1.48832 0.94446 0.92689 0.93566 1.25611 0.94784 0.95161 1.02404 1.69930 1.49405 1.03148 1.32577 0.85770 0.78489 0.77897 0.80416 1.20164 1.20727 1.19991 1.21865 1.00285 0.99051 0.94006 1.21471 0.91818 0.88608 0.96967 0.88291 0.85863 0.85197 0.92519 0.91522 0.75425 0.89283 0.91286 0.95731 0.90015 0.97596 0.92887 0.91656 0.94320 0.91074 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 14.32 67.78 0.97 -1.21 16 2 C -0.18 -2.97 9.63 25.64 0.25 -2.72 16 3 C 0.16 3.79 6.12 85.63 0.52 4.32 16 4 N -0.74 -20.18 5.46 -482.29 -2.63 -22.81 16 5 C 0.70 25.26 8.29 179.05 1.49 26.74 16 6 O -0.64 -27.23 15.77 -3.99 -0.06 -27.29 16 7 N -0.62 -22.49 2.97 -836.91 -2.49 -24.97 16 8 C 0.12 4.16 6.38 86.36 0.55 4.71 16 9 C -0.11 -5.05 5.16 30.68 0.16 -4.89 16 10 C 0.05 2.20 2.06 -11.50 -0.02 2.17 16 11 C -0.54 -29.07 8.56 25.60 0.22 -28.85 16 12 H 0.05 2.51 7.74 -2.91 -0.02 2.48 16 13 C 0.02 1.04 5.30 84.66 0.45 1.49 16 14 N -0.91 -49.93 11.30 21.45 0.24 -49.68 16 15 Si 0.95 42.72 29.54 68.60 2.03 44.75 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 C -0.11 -4.77 5.30 30.67 0.16 -4.60 16 20 C 0.13 4.99 6.44 86.36 0.56 5.54 16 21 H 0.10 1.39 7.84 -2.91 -0.02 1.37 16 22 H 0.12 1.21 8.06 -2.91 -0.02 1.19 16 23 H 0.13 1.73 8.06 -2.92 -0.02 1.70 16 24 H 0.06 1.44 7.79 -2.39 -0.02 1.42 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.41 9.44 5.95 -92.71 -0.55 8.89 16 27 H 0.09 2.46 5.65 -2.38 -0.01 2.45 16 28 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 29 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 4.00 6.03 -2.39 -0.01 3.99 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 33 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.08 2.96 7.00 -2.38 -0.02 2.95 16 Total: -1.00 -63.56 293.35 2.89 -60.67 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.51 Total: 16.63 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.30 Total: 2.71 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -4.88 Total: -97.47 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.06 Total: -27.29 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -63.56 2.89 -60.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335316831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.233 kcal (2) G-P(sol) polarization free energy of solvation -63.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds