Wall clock time and date at job start Sun Mar 29 2020 22:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00323 * 2 1 4 4 H 1.08999 * 109.70442 * 5.36534 * 3 2 1 5 5 C 1.53200 * 109.58392 * 125.71128 * 3 2 1 6 6 C 1.53039 * 109.31329 * 174.42351 * 5 3 2 7 7 C 1.53044 * 109.54124 * 298.63791 * 6 5 3 8 8 C 1.52770 * 109.38072 * 61.23562 * 7 6 5 9 9 N 1.46923 * 109.59032 * 245.00282 * 3 2 1 10 10 C 1.34769 * 120.63038 * 6.58095 * 9 3 2 11 11 O 1.21591 * 120.00308 * 5.58785 * 10 9 3 12 12 N 1.34775 * 120.00207 * 185.58212 * 10 9 3 13 13 C 1.46502 * 120.00399 * 174.71366 * 12 10 9 14 14 C 1.50696 * 109.47476 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00192 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00372 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99719 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00423 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47008 * 90.00245 * 18 16 14 20 20 H 1.48498 * 109.47426 * 210.00430 * 18 16 14 21 21 H 1.48500 * 109.47177 * 330.00656 * 18 16 14 22 22 H 1.07997 * 120.00256 * 179.97438 * 1 2 3 23 23 H 1.07999 * 119.99787 * 359.97438 * 1 2 3 24 24 H 1.08007 * 119.99980 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.49682 * 294.37863 * 5 3 2 26 26 H 1.08999 * 109.49602 * 54.47794 * 5 3 2 27 27 H 1.09001 * 109.46000 * 58.65471 * 6 5 3 28 28 H 1.08998 * 109.46340 * 178.62729 * 6 5 3 29 29 H 1.08998 * 109.50137 * 181.31470 * 7 6 5 30 30 H 1.09002 * 109.49416 * 301.38474 * 7 6 5 31 31 H 1.09001 * 109.50585 * 185.70434 * 8 7 6 32 32 H 1.09001 * 109.43184 * 65.42905 * 8 7 6 33 33 H 0.97006 * 120.00059 * 354.99397 * 12 10 9 34 34 H 1.09003 * 109.47215 * 300.00508 * 13 12 10 35 35 H 1.09002 * 109.46755 * 60.00200 * 13 12 10 36 36 H 0.97000 * 120.00285 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3626 2.1342 0.0960 5 6 3.0499 1.3284 1.1720 6 6 3.9082 2.5926 1.0860 7 6 4.7083 2.5804 -0.2185 8 6 3.7448 2.5681 -1.4040 9 7 2.8164 1.4391 -1.2545 10 6 2.6626 0.5405 -2.2471 11 8 1.8224 -0.3332 -2.1514 12 7 3.4399 0.6104 -3.3458 13 6 3.3538 -0.4320 -4.3716 14 6 4.3192 -0.1210 -5.4862 15 1 4.9357 0.7643 -5.4354 16 6 4.4163 -0.9673 -6.5704 17 7 3.6660 -2.0456 -6.6321 18 14 5.6135 -0.5822 -7.9516 19 1 6.9265 -1.2108 -7.6581 20 1 5.0827 -1.1184 -9.2306 21 1 5.7831 0.8888 -8.0639 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9354 -0.0004 25 1 2.4981 1.3264 2.1120 26 1 3.6921 0.4489 1.1246 27 1 3.2636 3.4713 1.1085 28 1 4.5943 2.6239 1.9323 29 1 5.3368 3.4696 -0.2682 30 1 5.3351 1.6894 -0.2525 31 1 4.3087 2.4573 -2.3302 32 1 3.1836 3.5023 -1.4250 33 1 4.0595 1.3487 -3.4555 34 1 3.6061 -1.3967 -3.9314 35 1 2.3393 -0.4680 -4.7687 36 1 3.7340 -2.6408 -7.3949 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335321042.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:33 Heat of formation + Delta-G solvation = -7.053555 kcal Electronic energy + Delta-G solvation = -17370.162086 eV Core-core repulsion = 14661.946441 eV Total energy + Delta-G solvation = -2708.215645 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11149 -37.21489 -34.75350 -33.43340 -32.73023 -31.80456 -29.74276 -27.19167 -24.90796 -23.34623 -22.48344 -20.73194 -19.74905 -19.16042 -17.68938 -15.98492 -15.88658 -15.08571 -14.71807 -14.61956 -14.16825 -13.83354 -13.78088 -13.35438 -13.11678 -12.81214 -12.17057 -11.87522 -11.74546 -11.58036 -11.10564 -10.95481 -10.94240 -10.84637 -10.68345 -10.38255 -10.30079 -9.98839 -9.34732 -8.70907 -8.32615 -8.12096 -7.68999 -6.14018 -4.20552 2.66111 3.25320 3.31121 3.33587 3.47825 3.92591 4.32386 4.59183 4.76996 4.86996 4.91633 5.06179 5.22037 5.27564 5.35852 5.46348 5.61960 5.70356 5.80522 5.87553 5.89089 5.98406 6.04414 6.26561 6.38879 6.82430 7.04606 7.17051 7.30339 7.53779 7.57591 7.59752 7.88801 8.04413 8.77839 8.93336 9.35086 9.49983 10.96245 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032405 B = 0.006077 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.859493 B = 4606.085162 C = 5309.916719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.091 4.091 3 C 0.191 3.809 4 H 0.067 0.933 5 C -0.129 4.129 6 C -0.117 4.117 7 C -0.136 4.136 8 C 0.112 3.888 9 N -0.635 5.635 10 C 0.695 3.305 11 O -0.576 6.576 12 N -0.730 5.730 13 C 0.267 3.733 14 C -0.541 4.541 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.385 0.615 34 H 0.023 0.977 35 H 0.025 0.975 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.890 10.118 14.276 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.110 4.110 3 C 0.087 3.913 4 H 0.085 0.915 5 C -0.167 4.167 6 C -0.155 4.155 7 C -0.175 4.175 8 C -0.012 4.012 9 N -0.375 5.375 10 C 0.397 3.603 11 O -0.455 6.455 12 N -0.385 5.385 13 C 0.146 3.854 14 C -0.580 4.580 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 H 0.111 0.889 23 H 0.102 0.898 24 H 0.127 0.873 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.220 0.780 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.250 9.270 14.152 16.919 hybrid contribution 0.993 0.490 -0.998 1.491 sum 1.243 9.760 13.154 16.426 Atomic orbital electron populations 1.23301 0.95498 1.00757 1.05992 1.22456 0.95854 0.96692 0.95982 1.20113 0.91916 0.96349 0.82883 0.91467 1.21972 0.98194 0.98697 0.97852 1.21492 0.98584 0.97932 0.97447 1.21864 0.98060 1.02642 0.94909 1.21481 0.91409 0.89473 0.98792 1.47482 1.46146 1.28171 1.15685 1.16144 0.82197 0.81675 0.80324 1.90877 1.37489 1.38271 1.78860 1.45938 1.41821 1.29733 1.20963 1.18966 0.97440 0.85193 0.83825 1.21217 1.22775 1.09551 1.04437 0.92073 1.24939 0.96029 0.94772 0.98257 1.69979 1.38800 1.12764 1.30737 0.86419 0.80812 0.78565 0.81122 1.20490 1.21002 1.19784 0.88904 0.89761 0.87318 0.90905 0.91298 0.91922 0.91823 0.90925 0.91311 0.90010 0.91907 0.78048 0.95924 0.95682 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.41 14.07 29.01 0.41 -3.00 16 2 C -0.09 -1.50 5.65 -36.03 -0.20 -1.70 16 3 C 0.19 2.72 3.24 -68.75 -0.22 2.50 16 4 H 0.07 0.89 7.81 -51.93 -0.41 0.49 16 5 C -0.13 -1.44 5.35 -26.61 -0.14 -1.58 16 6 C -0.12 -1.09 5.89 -26.69 -0.16 -1.25 16 7 C -0.14 -1.39 6.07 -26.83 -0.16 -1.56 16 8 C 0.11 1.40 6.41 -3.93 -0.03 1.38 16 9 N -0.64 -10.32 2.98 -172.49 -0.51 -10.83 16 10 C 0.70 14.83 8.18 -86.93 -0.71 14.11 16 11 O -0.58 -14.22 12.88 5.29 0.07 -14.16 16 12 N -0.73 -16.15 5.46 -66.41 -0.36 -16.52 16 13 C 0.27 7.26 5.43 -5.19 -0.03 7.23 16 14 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 15 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 18 Si 0.90 21.01 29.54 -169.99 -5.02 15.98 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H 0.09 1.42 8.06 -52.49 -0.42 1.00 16 23 H 0.08 1.20 7.85 -52.49 -0.41 0.79 16 24 H 0.11 1.98 7.65 -52.48 -0.40 1.58 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.04 5.56 -51.93 -0.29 0.75 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.38 7.41 5.78 -40.82 -0.24 7.17 16 34 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 292.37 15.07 4.41 4.41 Total: -1.00 -31.92 292.37 -7.85 -39.77 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.50 Total: 4.40 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.66 Total: 2.59 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.14 Total: -52.99 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.07 Total: -14.16 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.92 -7.85 -39.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335321042.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.718 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds