Wall clock time and date at job start Sun Mar 29 2020 22:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00323 * 2 1 4 4 H 1.08999 * 109.70442 * 5.36534 * 3 2 1 5 5 C 1.53200 * 109.58392 * 125.71128 * 3 2 1 6 6 C 1.53039 * 109.31329 * 174.42351 * 5 3 2 7 7 C 1.53044 * 109.54124 * 298.63791 * 6 5 3 8 8 C 1.52770 * 109.38072 * 61.23562 * 7 6 5 9 9 N 1.46923 * 109.59032 * 245.00282 * 3 2 1 10 10 C 1.34769 * 120.63038 * 6.58095 * 9 3 2 11 11 O 1.21591 * 120.00308 * 5.58785 * 10 9 3 12 12 N 1.34775 * 120.00207 * 185.58212 * 10 9 3 13 13 C 1.46502 * 120.00399 * 174.71366 * 12 10 9 14 14 C 1.50696 * 109.47476 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00192 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00372 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99719 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00423 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47008 * 90.00245 * 18 16 14 20 20 H 1.48498 * 109.47426 * 210.00430 * 18 16 14 21 21 H 1.48500 * 109.47177 * 330.00656 * 18 16 14 22 22 H 1.07997 * 120.00256 * 179.97438 * 1 2 3 23 23 H 1.07999 * 119.99787 * 359.97438 * 1 2 3 24 24 H 1.08007 * 119.99980 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.49682 * 294.37863 * 5 3 2 26 26 H 1.08999 * 109.49602 * 54.47794 * 5 3 2 27 27 H 1.09001 * 109.46000 * 58.65471 * 6 5 3 28 28 H 1.08998 * 109.46340 * 178.62729 * 6 5 3 29 29 H 1.08998 * 109.50137 * 181.31470 * 7 6 5 30 30 H 1.09002 * 109.49416 * 301.38474 * 7 6 5 31 31 H 1.09001 * 109.50585 * 185.70434 * 8 7 6 32 32 H 1.09001 * 109.43184 * 65.42905 * 8 7 6 33 33 H 0.97006 * 120.00059 * 354.99397 * 12 10 9 34 34 H 1.09003 * 109.47215 * 300.00508 * 13 12 10 35 35 H 1.09002 * 109.46755 * 60.00200 * 13 12 10 36 36 H 0.97000 * 120.00285 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3626 2.1342 0.0960 5 6 3.0499 1.3284 1.1720 6 6 3.9082 2.5926 1.0860 7 6 4.7083 2.5804 -0.2185 8 6 3.7448 2.5681 -1.4040 9 7 2.8164 1.4391 -1.2545 10 6 2.6626 0.5405 -2.2471 11 8 1.8224 -0.3332 -2.1514 12 7 3.4399 0.6104 -3.3458 13 6 3.3538 -0.4320 -4.3716 14 6 4.3192 -0.1210 -5.4862 15 1 4.9357 0.7643 -5.4354 16 6 4.4163 -0.9673 -6.5704 17 7 3.6660 -2.0456 -6.6321 18 14 5.6135 -0.5822 -7.9516 19 1 6.9265 -1.2108 -7.6581 20 1 5.0827 -1.1184 -9.2306 21 1 5.7831 0.8888 -8.0639 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9354 -0.0004 25 1 2.4981 1.3264 2.1120 26 1 3.6921 0.4489 1.1246 27 1 3.2636 3.4713 1.1085 28 1 4.5943 2.6239 1.9323 29 1 5.3368 3.4696 -0.2682 30 1 5.3351 1.6894 -0.2525 31 1 4.3087 2.4573 -2.3302 32 1 3.1836 3.5023 -1.4250 33 1 4.0595 1.3487 -3.4555 34 1 3.6061 -1.3967 -3.9314 35 1 2.3393 -0.4680 -4.7687 36 1 3.7340 -2.6408 -7.3949 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335321042.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:33 Heat of formation + Delta-G solvation = -28.220248 kcal Electronic energy + Delta-G solvation = -17371.079942 eV Core-core repulsion = 14661.946441 eV Total energy + Delta-G solvation = -2709.133501 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54360 -38.59399 -36.43468 -35.10284 -34.17891 -33.42295 -30.81130 -29.21190 -26.19571 -24.71469 -24.07306 -22.04719 -21.07929 -20.55723 -19.23424 -17.95696 -17.37305 -16.68533 -16.40084 -15.78219 -15.39321 -15.27910 -14.85806 -14.68374 -14.54677 -14.24133 -13.95388 -13.68291 -13.25381 -12.85978 -12.71326 -12.59114 -12.22775 -12.10750 -11.80720 -11.68564 -11.54295 -11.39364 -11.36899 -10.80194 -9.96414 -9.60967 -9.32658 -8.28962 -6.45817 1.33297 1.43226 1.45729 1.57022 2.06432 2.25399 2.39031 3.05868 3.19308 3.75426 3.88987 3.99956 4.11276 4.19872 4.32348 4.47920 4.65259 4.67182 4.92089 4.96242 5.00685 5.05494 5.12748 5.18244 5.24915 5.26908 5.47067 5.48437 5.61615 5.72411 5.78437 5.85258 6.02662 6.15419 6.65926 7.20733 7.25003 7.73638 8.83457 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032405 B = 0.006077 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.859493 B = 4606.085162 C = 5309.916719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.107 4.107 3 C 0.186 3.814 4 H 0.088 0.912 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.132 4.132 8 C 0.103 3.897 9 N -0.626 5.626 10 C 0.688 3.312 11 O -0.620 6.620 12 N -0.727 5.727 13 C 0.288 3.712 14 C -0.555 4.555 15 H 0.082 0.918 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.987 3.013 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.255 1.255 22 H 0.088 0.912 23 H 0.104 0.896 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.400 0.600 34 H -0.017 1.017 35 H -0.017 1.017 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.377 13.066 14.916 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.126 4.126 3 C 0.083 3.917 4 H 0.106 0.894 5 C -0.161 4.161 6 C -0.149 4.149 7 C -0.170 4.170 8 C -0.019 4.019 9 N -0.365 5.365 10 C 0.390 3.610 11 O -0.502 6.502 12 N -0.383 5.383 13 C 0.165 3.835 14 C -0.593 4.593 15 H 0.100 0.900 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.809 3.191 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.179 1.179 22 H 0.106 0.894 23 H 0.123 0.877 24 H 0.097 0.903 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.238 0.762 34 H 0.001 0.999 35 H 0.001 0.999 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.760 12.290 14.856 19.361 hybrid contribution 0.446 -0.442 -1.099 1.265 sum 2.206 11.848 13.757 18.290 Atomic orbital electron populations 1.23484 0.95424 1.01555 1.04813 1.22497 0.96314 0.96978 0.96813 1.20400 0.92838 0.95506 0.82911 0.89386 1.21953 0.97687 0.99288 0.97192 1.21506 0.98713 0.97192 0.97531 1.21858 0.97611 1.03261 0.94242 1.21838 0.91509 0.88727 0.99864 1.47534 1.46388 1.27725 1.14814 1.16373 0.81598 0.82174 0.80903 1.90850 1.39104 1.40283 1.79968 1.45559 1.42815 1.29285 1.20643 1.18360 0.95189 0.85093 0.84879 1.21581 1.22881 1.10363 1.04481 0.90030 1.26076 0.97914 0.94243 1.01322 1.70147 1.40808 1.14124 1.31882 0.85131 0.77893 0.79255 0.76772 1.19511 1.20896 1.17880 0.89360 0.87744 0.90293 0.88754 0.93154 0.90109 0.89815 0.87927 0.93051 0.90595 0.89321 0.76216 0.99938 0.99873 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.77 14.07 67.78 0.95 -5.81 16 2 C -0.11 -3.61 5.65 25.64 0.14 -3.46 16 3 C 0.19 5.05 3.24 44.23 0.14 5.19 16 4 H 0.09 2.07 7.81 -2.39 -0.02 2.05 16 5 C -0.12 -2.47 5.35 30.67 0.16 -2.31 16 6 C -0.11 -1.65 5.89 30.62 0.18 -1.47 16 7 C -0.13 -2.25 6.07 30.53 0.19 -2.07 16 8 C 0.10 2.30 6.41 86.22 0.55 2.86 16 9 N -0.63 -19.85 2.98 -817.90 -2.44 -22.29 16 10 C 0.69 30.18 8.18 179.06 1.46 31.64 16 11 O -0.62 -32.26 12.88 -4.00 -0.05 -32.31 16 12 N -0.73 -33.04 5.46 -482.30 -2.63 -35.67 16 13 C 0.29 16.48 5.43 85.63 0.47 16.94 16 14 C -0.56 -30.95 9.28 25.60 0.24 -30.71 16 15 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 16 C 0.00 0.22 5.46 84.65 0.46 0.69 16 17 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 18 Si 0.99 42.75 29.54 68.60 2.03 44.77 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 H 0.09 2.79 8.06 -2.91 -0.02 2.77 16 23 H 0.10 2.83 7.85 -2.91 -0.02 2.81 16 24 H 0.08 3.09 7.65 -2.91 -0.02 3.07 16 25 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.79 5.56 -2.39 -0.01 1.77 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.40 15.34 5.78 -92.70 -0.54 14.81 16 34 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 35 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -72.91 292.37 2.66 -70.25 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.52 Total: 20.59 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 4.95 Total: 11.50 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -4.79 Total: -114.80 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.05 Total: -32.31 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -72.91 2.66 -70.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335321042.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.026 kcal (2) G-P(sol) polarization free energy of solvation -72.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds