Wall clock time and date at job start Sun Mar 29 2020 22:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50698 * 120.00504 * 2 1 4 4 H 1.09004 * 109.58429 * 354.61679 * 3 2 1 5 5 C 1.53188 * 109.59140 * 234.33227 * 3 2 1 6 6 C 1.53040 * 109.31411 * 185.57676 * 5 3 2 7 7 C 1.53042 * 109.53855 * 61.36552 * 6 5 3 8 8 C 1.53197 * 109.31090 * 298.63321 * 7 6 5 9 9 N 1.46925 * 109.58884 * 114.89791 * 3 2 1 10 10 C 1.34786 * 120.62676 * 353.39876 * 9 3 2 11 11 O 1.21586 * 120.00099 * 5.28054 * 10 9 3 12 12 N 1.34781 * 119.99757 * 185.27518 * 10 9 3 13 13 C 1.46495 * 119.99987 * 175.08408 * 12 10 9 14 14 C 1.50697 * 109.47358 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99768 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00252 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00035 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00298 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47102 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47050 * 119.99547 * 18 16 14 21 21 H 1.48494 * 109.47269 * 240.00094 * 18 16 14 22 22 H 1.08009 * 119.99842 * 354.97687 * 1 2 3 23 23 H 1.08002 * 120.00499 * 174.69588 * 1 2 3 24 24 H 1.08001 * 119.99765 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.49945 * 305.53072 * 5 3 2 26 26 H 1.09007 * 109.49533 * 65.62445 * 5 3 2 27 27 H 1.09004 * 109.45786 * 181.38773 * 6 5 3 28 28 H 1.08999 * 109.45787 * 301.34342 * 6 5 3 29 29 H 1.08990 * 109.49712 * 58.58699 * 7 6 5 30 30 H 1.08994 * 109.49450 * 178.68281 * 7 6 5 31 31 H 1.09001 * 109.58199 * 174.42069 * 8 7 6 32 32 H 1.09001 * 109.58346 * 294.70628 * 8 7 6 33 33 H 0.96996 * 119.99621 * 355.09160 * 12 10 9 34 34 H 1.09011 * 109.47209 * 300.00391 * 13 12 10 35 35 H 1.08997 * 109.46925 * 59.99553 * 13 12 10 36 36 H 0.96999 * 120.00708 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3608 2.1327 -0.0963 5 6 3.0491 1.3290 -1.1725 6 6 3.9074 2.5932 -1.0865 7 6 4.7083 2.5804 0.2176 8 6 3.7414 2.5706 1.4059 9 7 2.8145 1.4402 1.2556 10 6 2.6588 0.5425 2.2489 11 8 1.9657 -0.4414 2.0760 12 7 3.2714 0.7355 3.4338 13 6 3.0173 -0.1813 4.5477 14 6 3.8176 0.2530 5.7485 15 1 4.4525 1.1246 5.6877 16 6 3.7403 -0.4629 6.9242 17 7 2.9676 -1.5246 6.9981 18 14 4.7329 0.0750 8.4124 19 1 5.5158 1.2902 8.0723 20 1 3.8127 0.3786 9.5377 21 1 5.6588 -1.0156 8.8104 22 1 -0.5400 0.9318 0.0819 23 1 -0.5401 -0.9313 -0.0865 24 1 1.8499 -0.9353 0.0004 25 1 3.6913 0.4495 -1.1261 26 1 2.4967 1.3275 -2.1122 27 1 4.5929 2.6250 -1.9334 28 1 3.2627 3.4719 -1.1081 29 1 5.3348 1.6891 0.2509 30 1 5.3368 3.4695 0.2672 31 1 4.3036 2.4617 2.3333 32 1 3.1790 3.5041 1.4269 33 1 3.8805 1.4816 3.5489 34 1 1.9556 -0.1675 4.7948 35 1 3.3104 -1.1912 4.2611 36 1 2.9128 -2.0281 7.8253 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335321043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:35 Heat of formation + Delta-G solvation = -6.910461 kcal Electronic energy + Delta-G solvation = -17355.655560 eV Core-core repulsion = 14647.446120 eV Total energy + Delta-G solvation = -2708.209440 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11250 -37.21503 -34.75361 -33.43146 -32.75040 -31.80518 -29.72761 -27.19622 -24.91006 -23.35522 -22.47674 -20.73428 -19.78538 -19.18861 -17.62822 -15.98849 -15.86654 -15.12835 -14.78108 -14.63022 -14.12209 -13.85542 -13.76069 -13.30033 -13.19081 -12.80414 -12.19042 -11.86808 -11.77539 -11.57488 -11.10645 -10.96586 -10.91921 -10.86505 -10.69134 -10.45269 -10.26832 -9.90805 -9.33300 -8.71822 -8.36259 -8.10874 -7.70094 -6.14327 -4.20807 2.66351 3.24553 3.31182 3.34203 3.46675 3.91098 4.32317 4.59393 4.77130 4.85556 4.90455 5.06115 5.21825 5.27265 5.34741 5.46334 5.61272 5.71124 5.81193 5.86518 5.90193 5.96894 6.03600 6.26017 6.39584 6.81933 7.06082 7.17024 7.29989 7.53468 7.57570 7.59216 7.88204 8.03983 8.77654 8.92571 9.34347 9.49442 10.95982 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033141 B = 0.006008 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.669949 B = 4659.410124 C = 5362.498947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.090 4.090 3 C 0.189 3.811 4 H 0.068 0.932 5 C -0.128 4.128 6 C -0.117 4.117 7 C -0.135 4.135 8 C 0.112 3.888 9 N -0.635 5.635 10 C 0.696 3.304 11 O -0.577 6.577 12 N -0.730 5.730 13 C 0.266 3.734 14 C -0.541 4.541 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.115 0.885 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.385 0.615 34 H 0.023 0.977 35 H 0.025 0.975 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 9.363 -14.806 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.108 4.108 3 C 0.086 3.914 4 H 0.085 0.915 5 C -0.166 4.166 6 C -0.155 4.155 7 C -0.174 4.174 8 C -0.012 4.012 9 N -0.375 5.375 10 C 0.397 3.603 11 O -0.456 6.456 12 N -0.384 5.384 13 C 0.145 3.855 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.102 0.898 23 H 0.110 0.890 24 H 0.133 0.867 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.220 0.780 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.409 8.473 -14.717 17.040 hybrid contribution 0.829 0.595 1.090 1.493 sum 2.238 9.068 -13.627 16.521 Atomic orbital electron populations 1.23321 0.95545 1.00846 1.06618 1.22545 0.95751 0.96915 0.95629 1.20181 0.91906 0.96407 0.82924 0.91454 1.21951 0.98161 0.98667 0.97821 1.21495 0.98592 0.97962 0.97429 1.21927 0.98000 1.02572 0.94893 1.21571 0.91383 0.89527 0.98713 1.47512 1.46305 1.28053 1.15637 1.16146 0.81002 0.82570 0.80555 1.90853 1.45169 1.29663 1.79871 1.45930 1.47803 1.33401 1.11243 1.18977 0.96844 0.88381 0.81275 1.21253 1.27488 1.13031 0.96147 0.92012 1.24942 0.95479 0.94732 0.98861 1.69989 1.37751 1.17218 1.27320 0.86366 0.79757 0.78566 0.82233 1.19678 1.20806 1.20802 0.89758 0.88956 0.86743 0.91287 0.90902 0.91817 0.91895 0.91371 0.90927 0.90045 0.91849 0.78036 0.95853 0.95713 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.54 14.23 29.02 0.41 -3.13 16 2 C -0.09 -1.48 5.71 -36.02 -0.21 -1.68 16 3 C 0.19 2.70 3.23 -68.75 -0.22 2.48 16 4 H 0.07 0.89 7.81 -51.93 -0.41 0.49 16 5 C -0.13 -1.42 5.35 -26.61 -0.14 -1.56 16 6 C -0.12 -1.09 5.88 -26.69 -0.16 -1.25 16 7 C -0.14 -1.37 6.08 -26.61 -0.16 -1.53 16 8 C 0.11 1.39 6.38 -3.69 -0.02 1.37 16 9 N -0.64 -10.32 2.98 -172.20 -0.51 -10.83 16 10 C 0.70 14.83 8.22 -86.91 -0.71 14.11 16 11 O -0.58 -14.20 12.75 5.29 0.07 -14.13 16 12 N -0.73 -16.15 5.46 -66.41 -0.36 -16.51 16 13 C 0.27 7.25 5.43 -5.20 -0.03 7.22 16 14 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 15 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 18 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H 0.08 1.22 7.86 -52.48 -0.41 0.81 16 23 H 0.09 1.40 8.06 -52.49 -0.42 0.98 16 24 H 0.11 2.09 7.37 -52.49 -0.39 1.71 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.03 5.66 -51.93 -0.29 0.74 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.38 7.41 5.82 -40.82 -0.24 7.17 16 34 H 0.02 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 292.36 15.07 4.41 4.41 Total: -1.00 -31.91 292.36 -7.84 -39.75 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.50 Total: 4.49 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.66 Total: 2.49 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.14 Total: -52.99 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.07 Total: -14.13 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.91 -7.84 -39.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335321043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.839 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds