Wall clock time and date at job start Sun Mar 29 2020 22:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50698 * 120.00504 * 2 1 4 4 H 1.09004 * 109.58429 * 354.61679 * 3 2 1 5 5 C 1.53188 * 109.59140 * 234.33227 * 3 2 1 6 6 C 1.53040 * 109.31411 * 185.57676 * 5 3 2 7 7 C 1.53042 * 109.53855 * 61.36552 * 6 5 3 8 8 C 1.53197 * 109.31090 * 298.63321 * 7 6 5 9 9 N 1.46925 * 109.58884 * 114.89791 * 3 2 1 10 10 C 1.34786 * 120.62676 * 353.39876 * 9 3 2 11 11 O 1.21586 * 120.00099 * 5.28054 * 10 9 3 12 12 N 1.34781 * 119.99757 * 185.27518 * 10 9 3 13 13 C 1.46495 * 119.99987 * 175.08408 * 12 10 9 14 14 C 1.50697 * 109.47358 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99768 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00252 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00035 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00298 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47102 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47050 * 119.99547 * 18 16 14 21 21 H 1.48494 * 109.47269 * 240.00094 * 18 16 14 22 22 H 1.08009 * 119.99842 * 354.97687 * 1 2 3 23 23 H 1.08002 * 120.00499 * 174.69588 * 1 2 3 24 24 H 1.08001 * 119.99765 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.49945 * 305.53072 * 5 3 2 26 26 H 1.09007 * 109.49533 * 65.62445 * 5 3 2 27 27 H 1.09004 * 109.45786 * 181.38773 * 6 5 3 28 28 H 1.08999 * 109.45787 * 301.34342 * 6 5 3 29 29 H 1.08990 * 109.49712 * 58.58699 * 7 6 5 30 30 H 1.08994 * 109.49450 * 178.68281 * 7 6 5 31 31 H 1.09001 * 109.58199 * 174.42069 * 8 7 6 32 32 H 1.09001 * 109.58346 * 294.70628 * 8 7 6 33 33 H 0.96996 * 119.99621 * 355.09160 * 12 10 9 34 34 H 1.09011 * 109.47209 * 300.00391 * 13 12 10 35 35 H 1.08997 * 109.46925 * 59.99553 * 13 12 10 36 36 H 0.96999 * 120.00708 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3608 2.1327 -0.0963 5 6 3.0491 1.3290 -1.1725 6 6 3.9074 2.5932 -1.0865 7 6 4.7083 2.5804 0.2176 8 6 3.7414 2.5706 1.4059 9 7 2.8145 1.4402 1.2556 10 6 2.6588 0.5425 2.2489 11 8 1.9657 -0.4414 2.0760 12 7 3.2714 0.7355 3.4338 13 6 3.0173 -0.1813 4.5477 14 6 3.8176 0.2530 5.7485 15 1 4.4525 1.1246 5.6877 16 6 3.7403 -0.4629 6.9242 17 7 2.9676 -1.5246 6.9981 18 14 4.7329 0.0750 8.4124 19 1 5.5158 1.2902 8.0723 20 1 3.8127 0.3786 9.5377 21 1 5.6588 -1.0156 8.8104 22 1 -0.5400 0.9318 0.0819 23 1 -0.5401 -0.9313 -0.0865 24 1 1.8499 -0.9353 0.0004 25 1 3.6913 0.4495 -1.1261 26 1 2.4967 1.3275 -2.1122 27 1 4.5929 2.6250 -1.9334 28 1 3.2627 3.4719 -1.1081 29 1 5.3348 1.6891 0.2509 30 1 5.3368 3.4695 0.2672 31 1 4.3036 2.4617 2.3333 32 1 3.1790 3.5041 1.4269 33 1 3.8805 1.4816 3.5489 34 1 1.9556 -0.1675 4.7948 35 1 3.3104 -1.1912 4.2611 36 1 2.9128 -2.0281 7.8253 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335321043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:35 Heat of formation + Delta-G solvation = -28.037735 kcal Electronic energy + Delta-G solvation = -17356.571707 eV Core-core repulsion = 14647.446120 eV Total energy + Delta-G solvation = -2709.125587 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.54608 -38.58887 -36.43823 -35.09890 -34.19107 -33.42432 -30.79434 -29.21427 -26.19795 -24.72083 -24.06687 -22.03432 -21.15421 -20.55359 -19.18854 -17.94007 -17.35936 -16.70884 -16.43012 -15.85161 -15.38661 -15.21986 -14.86044 -14.69649 -14.53878 -14.21561 -13.97911 -13.70807 -13.27221 -12.82844 -12.75499 -12.58691 -12.21924 -12.13468 -11.82814 -11.65015 -11.53343 -11.37625 -11.30408 -10.81579 -9.99811 -9.61471 -9.32983 -8.29174 -6.45938 1.33212 1.43382 1.44579 1.58044 2.05772 2.23779 2.38868 3.05783 3.19406 3.75226 3.88752 3.99036 4.11614 4.20587 4.31413 4.48671 4.66289 4.67065 4.91877 4.95701 5.00796 5.05637 5.12739 5.17966 5.24546 5.26710 5.47191 5.48171 5.61215 5.72741 5.78885 5.85281 6.01678 6.15053 6.66065 7.20051 7.24833 7.72806 8.83484 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033141 B = 0.006008 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.669949 B = 4659.410124 C = 5362.498947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.104 4.104 3 C 0.184 3.816 4 H 0.088 0.912 5 C -0.122 4.122 6 C -0.112 4.112 7 C -0.130 4.130 8 C 0.102 3.898 9 N -0.626 5.626 10 C 0.688 3.312 11 O -0.620 6.620 12 N -0.726 5.726 13 C 0.288 3.712 14 C -0.554 4.554 15 H 0.082 0.918 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.987 3.013 19 H -0.253 1.253 20 H -0.278 1.278 21 H -0.278 1.278 22 H 0.101 0.899 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.400 0.600 34 H -0.017 1.017 35 H -0.017 1.017 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.398 12.339 -15.394 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.123 4.123 3 C 0.082 3.918 4 H 0.106 0.894 5 C -0.160 4.160 6 C -0.150 4.150 7 C -0.169 4.169 8 C -0.020 4.020 9 N -0.365 5.365 10 C 0.390 3.610 11 O -0.502 6.502 12 N -0.382 5.382 13 C 0.164 3.836 14 C -0.592 4.592 15 H 0.100 0.900 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.810 3.190 19 H -0.176 1.176 20 H -0.204 1.204 21 H -0.204 1.204 22 H 0.120 0.880 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.238 0.762 34 H 0.001 0.999 35 H 0.001 0.999 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.852 11.518 -15.371 19.418 hybrid contribution 0.317 -0.355 1.167 1.260 sum 3.169 11.164 -14.204 18.342 Atomic orbital electron populations 1.23504 0.95496 1.01617 1.05567 1.22580 0.96181 0.97231 0.96340 1.20473 0.92816 0.95548 0.83012 0.89449 1.21934 0.97652 0.99301 0.97120 1.21510 0.98720 0.97184 0.97557 1.21921 0.97534 1.03251 0.94155 1.21932 0.91478 0.88744 0.99853 1.47560 1.46462 1.27638 1.14804 1.16377 0.80511 0.82985 0.81132 1.90830 1.46742 1.31733 1.80926 1.45550 1.48741 1.33241 1.10698 1.18370 0.94424 0.87609 0.83167 1.21610 1.27652 1.13723 0.96212 0.90015 1.26076 0.96472 0.94449 1.02569 1.70152 1.39553 1.18745 1.28541 0.85083 0.77942 0.78712 0.77294 1.17592 1.20365 1.20402 0.88033 0.89165 0.89635 0.93057 0.88789 0.89758 0.90161 0.92983 0.87934 0.90600 0.89374 0.76205 0.99872 0.99887 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.09 14.23 67.79 0.96 -6.12 16 2 C -0.10 -3.52 5.71 25.65 0.15 -3.37 16 3 C 0.18 5.01 3.23 44.23 0.14 5.15 16 4 H 0.09 2.07 7.81 -2.38 -0.02 2.05 16 5 C -0.12 -2.44 5.35 30.67 0.16 -2.28 16 6 C -0.11 -1.64 5.88 30.62 0.18 -1.46 16 7 C -0.13 -2.21 6.08 30.67 0.19 -2.02 16 8 C 0.10 2.29 6.38 86.36 0.55 2.84 16 9 N -0.63 -19.84 2.98 -816.97 -2.43 -22.27 16 10 C 0.69 30.16 8.22 179.05 1.47 31.63 16 11 O -0.62 -32.22 12.75 -3.99 -0.05 -32.27 16 12 N -0.73 -32.97 5.46 -482.29 -2.63 -35.60 16 13 C 0.29 16.43 5.43 85.63 0.47 16.89 16 14 C -0.55 -30.85 9.28 25.60 0.24 -30.61 16 15 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 16 C 0.00 0.22 5.46 84.65 0.46 0.68 16 17 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 18 Si 0.99 42.74 29.54 68.60 2.03 44.77 16 19 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 20 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 H 0.10 2.83 7.86 -2.91 -0.02 2.81 16 23 H 0.09 2.82 8.06 -2.91 -0.02 2.80 16 24 H 0.09 3.35 7.37 -2.91 -0.02 3.33 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.78 5.66 -2.39 -0.01 1.77 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.40 15.32 5.82 -92.71 -0.54 14.78 16 34 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 35 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -72.78 292.36 2.68 -70.10 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.51 Total: 20.77 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 4.97 Total: 11.33 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -4.78 Total: -114.69 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.05 Total: -32.27 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -72.78 2.68 -70.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335321043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.057 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds