Wall clock time and date at job start Sun Mar 29 2020 22:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00016 * 179.97438 * 10 9 7 12 12 O 1.21578 * 120.00178 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.47023 * 125.64734 * 359.68738 * 13 11 10 15 15 C 1.54315 * 107.27455 * 180.97251 * 14 13 11 16 16 C 1.55160 * 102.86283 * 22.52731 * 15 14 13 17 17 H 1.08992 * 111.00186 * 82.37774 * 16 15 14 18 18 C 1.53003 * 111.00369 * 206.23121 * 16 15 14 19 19 C 1.53007 * 117.49593 * 242.39836 * 18 16 15 20 20 C 1.52994 * 117.49912 * 173.74052 * 18 16 15 21 21 C 1.47422 * 125.64630 * 180.02562 * 13 11 10 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 0.97001 * 120.00220 * 0.02562 * 10 9 7 26 26 H 1.08998 * 109.88442 * 300.51695 * 14 13 11 27 27 H 1.09001 * 109.88035 * 61.68621 * 14 13 11 28 28 H 1.09008 * 110.92360 * 264.11340 * 15 14 13 29 29 H 1.08993 * 110.74422 * 140.85744 * 15 14 13 30 30 H 1.09002 * 115.55033 * 28.06211 * 18 16 15 31 31 H 1.09001 * 117.49716 * 0.02562 * 19 18 16 32 32 H 1.09001 * 117.49422 * 145.02029 * 19 18 16 33 33 H 1.09000 * 117.50132 * 214.97833 * 20 18 16 34 34 H 1.09006 * 117.49984 * 359.97247 * 20 18 16 35 35 H 1.08994 * 110.36694 * 274.66894 * 21 13 11 36 36 H 1.08999 * 110.36422 * 36.99805 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5584 -5.1056 0.0000 13 7 2.6295 -5.9078 0.0005 14 6 4.0944 -5.7827 -0.0059 15 6 4.6763 -7.2118 -0.0276 16 6 3.5092 -8.0511 -0.6116 17 1 3.4928 -7.9931 -1.6999 18 6 3.5916 -9.5053 -0.1432 19 6 3.7842 -10.5822 -1.2130 20 6 2.4319 -10.4328 -0.5115 21 6 2.2773 -7.3393 0.0006 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 3.1567 -3.4355 -0.0002 26 1 4.4159 -5.2361 -0.8925 27 1 4.4260 -5.2632 0.8931 28 1 4.9254 -7.5460 0.9796 29 1 5.5505 -7.2629 -0.6766 30 1 4.0746 -9.6620 0.8213 31 1 3.8527 -10.2545 -2.2503 32 1 4.3936 -11.4475 -0.9520 33 1 2.1521 -11.1999 0.2106 34 1 1.6100 -10.0069 -1.0871 35 1 2.1054 -7.6877 1.0190 36 1 1.3944 -7.5127 -0.6147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336197923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:09 Heat of formation + Delta-G solvation = -12.494764 kcal Electronic energy + Delta-G solvation = -16693.576643 eV Core-core repulsion = 13985.125050 eV Total energy + Delta-G solvation = -2708.451593 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.84745 -38.12671 -36.08076 -34.10537 -32.33492 -30.98216 -28.88355 -27.03567 -24.07205 -22.59290 -22.11266 -21.94650 -20.09102 -19.24138 -17.97147 -16.22196 -16.02531 -15.59042 -15.11723 -14.63587 -14.38826 -13.96109 -13.46075 -13.05543 -12.90352 -12.62120 -12.06454 -11.88432 -11.79737 -11.72376 -11.60352 -11.29527 -10.94889 -10.84692 -10.80041 -10.36188 -10.26802 -10.06398 -9.36438 -9.34681 -8.69392 -8.31950 -7.67508 -6.12267 -4.18832 3.21387 3.27847 3.32669 3.35100 3.54955 3.96066 4.32463 4.38173 4.47407 4.60625 4.77444 4.88885 5.02936 5.10611 5.23533 5.26866 5.37796 5.44064 5.45502 5.68548 5.70783 5.75795 5.88873 5.91813 5.97126 6.06115 6.22960 6.58481 7.24900 7.55576 7.60956 7.62957 7.93594 8.07047 8.79620 8.95561 9.37054 9.52022 10.98033 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.057960 B = 0.004327 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.975631 B = 6468.850108 C = 6847.654066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.711 3.289 12 O -0.599 6.599 13 N -0.647 5.647 14 C 0.101 3.899 15 C -0.120 4.120 16 C -0.073 4.073 17 H 0.084 0.916 18 C -0.140 4.140 19 C -0.179 4.179 20 C -0.179 4.179 21 C 0.136 3.864 22 H 0.266 0.734 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.386 0.614 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.170 -17.695 -0.804 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.379 5.379 11 C 0.412 3.588 12 O -0.478 6.478 13 N -0.387 5.387 14 C -0.023 4.023 15 C -0.158 4.158 16 C -0.093 4.093 17 H 0.102 0.898 18 C -0.159 4.159 19 C -0.217 4.217 20 C -0.216 4.216 21 C 0.012 3.988 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.218 0.782 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.010 -17.580 -0.799 20.246 hybrid contribution 0.937 1.018 0.021 1.384 sum 10.947 -16.562 -0.778 19.868 Atomic orbital electron populations 1.69974 1.06092 1.27353 1.48898 1.24946 0.94914 0.99370 0.94777 0.86466 0.79394 0.82320 0.78650 1.21075 1.20087 1.20094 1.21188 0.93208 0.90450 1.53188 0.92043 1.18985 0.87804 0.81038 0.97607 1.45725 1.10817 1.04216 1.77128 1.15697 0.84235 0.80443 0.78392 1.90867 1.13804 1.83868 1.59225 1.47621 1.05385 1.05490 1.80246 1.21919 0.81311 0.97567 1.01525 1.22637 0.97671 0.93690 1.01813 1.21963 0.95227 0.91864 1.00202 0.89770 1.22181 1.03515 0.90582 0.99596 1.23015 1.00196 1.00713 0.97727 1.22974 0.92280 1.02549 1.03843 1.21907 0.97081 0.79341 1.00463 0.92415 0.95744 0.95742 0.78159 0.91803 0.91769 0.90526 0.90190 0.87550 0.88791 0.88942 0.88789 0.88505 0.92056 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.54 -15.11 9.28 -34.44 -0.32 -15.43 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.40 5.43 -5.20 -0.03 7.38 16 10 N -0.73 -16.60 5.51 -66.42 -0.37 -16.97 16 11 C 0.71 15.93 8.49 -86.91 -0.74 15.19 16 12 O -0.60 -15.94 16.60 5.30 0.09 -15.86 16 13 N -0.65 -10.90 3.33 -176.26 -0.59 -11.49 16 14 C 0.10 1.26 6.14 -3.07 -0.02 1.24 16 15 C -0.12 -1.11 6.42 -24.90 -0.16 -1.27 16 16 C -0.07 -0.74 3.20 -88.48 -0.28 -1.03 16 17 H 0.08 0.87 7.97 -51.93 -0.41 0.46 16 18 C -0.14 -1.18 5.24 -90.62 -0.47 -1.65 16 19 C -0.18 -1.35 10.20 -26.69 -0.27 -1.62 16 20 C -0.18 -1.48 10.00 -26.70 -0.27 -1.75 16 21 C 0.14 1.90 6.14 -2.54 -0.02 1.89 16 22 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.02 0.75 8.14 -51.92 -0.42 0.32 16 24 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.39 7.67 7.31 -40.82 -0.30 7.37 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.64 7.89 -51.92 -0.41 0.23 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.11 0.82 7.93 -51.93 -0.41 0.41 16 31 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.84 8.03 -51.93 -0.42 0.42 16 36 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 LS Contribution 301.87 15.07 4.55 4.55 Total: -1.00 -33.21 301.87 -8.98 -42.19 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.70 Total: 2.67 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -2.67 Total: 4.63 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.22 Total: -54.31 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.09 Total: -15.86 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.21 -8.98 -42.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336197923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.698 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds