Wall clock time and date at job start Sun Mar 29 2020 22:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00016 * 179.97438 * 10 9 7 12 12 O 1.21578 * 120.00178 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.47023 * 125.64734 * 359.68738 * 13 11 10 15 15 C 1.54315 * 107.27455 * 180.97251 * 14 13 11 16 16 C 1.55160 * 102.86283 * 22.52731 * 15 14 13 17 17 H 1.08992 * 111.00186 * 82.37774 * 16 15 14 18 18 C 1.53003 * 111.00369 * 206.23121 * 16 15 14 19 19 C 1.53007 * 117.49593 * 242.39836 * 18 16 15 20 20 C 1.52994 * 117.49912 * 173.74052 * 18 16 15 21 21 C 1.47422 * 125.64630 * 180.02562 * 13 11 10 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 0.97001 * 120.00220 * 0.02562 * 10 9 7 26 26 H 1.08998 * 109.88442 * 300.51695 * 14 13 11 27 27 H 1.09001 * 109.88035 * 61.68621 * 14 13 11 28 28 H 1.09008 * 110.92360 * 264.11340 * 15 14 13 29 29 H 1.08993 * 110.74422 * 140.85744 * 15 14 13 30 30 H 1.09002 * 115.55033 * 28.06211 * 18 16 15 31 31 H 1.09001 * 117.49716 * 0.02562 * 19 18 16 32 32 H 1.09001 * 117.49422 * 145.02029 * 19 18 16 33 33 H 1.09000 * 117.50132 * 214.97833 * 20 18 16 34 34 H 1.09006 * 117.49984 * 359.97247 * 20 18 16 35 35 H 1.08994 * 110.36694 * 274.66894 * 21 13 11 36 36 H 1.08999 * 110.36422 * 36.99805 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5584 -5.1056 0.0000 13 7 2.6295 -5.9078 0.0005 14 6 4.0944 -5.7827 -0.0059 15 6 4.6763 -7.2118 -0.0276 16 6 3.5092 -8.0511 -0.6116 17 1 3.4928 -7.9931 -1.6999 18 6 3.5916 -9.5053 -0.1432 19 6 3.7842 -10.5822 -1.2130 20 6 2.4319 -10.4328 -0.5115 21 6 2.2773 -7.3393 0.0006 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 3.1567 -3.4355 -0.0002 26 1 4.4159 -5.2361 -0.8925 27 1 4.4260 -5.2632 0.8931 28 1 4.9254 -7.5460 0.9796 29 1 5.5505 -7.2629 -0.6766 30 1 4.0746 -9.6620 0.8213 31 1 3.8527 -10.2545 -2.2503 32 1 4.3936 -11.4475 -0.9520 33 1 2.1521 -11.1999 0.2106 34 1 1.6100 -10.0069 -1.0871 35 1 2.1054 -7.6877 1.0190 36 1 1.3944 -7.5127 -0.6147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336197923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:09 Heat of formation + Delta-G solvation = -34.788118 kcal Electronic energy + Delta-G solvation = -16694.543355 eV Core-core repulsion = 13985.125050 eV Total energy + Delta-G solvation = -2709.418306 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26981 -39.35099 -37.12682 -36.16830 -34.38737 -32.26034 -29.99992 -29.00300 -25.56909 -24.04226 -23.07987 -22.93399 -21.05166 -20.81283 -19.54916 -18.06356 -17.42271 -16.98250 -16.45174 -16.28665 -15.88366 -15.10487 -14.70710 -14.45288 -14.32137 -14.12684 -13.80986 -13.63868 -12.93579 -12.89777 -12.67542 -12.54650 -12.33127 -12.24170 -12.07843 -11.63460 -11.51501 -11.28344 -11.02087 -10.80310 -10.77696 -10.07604 -9.40733 -8.28959 -6.46337 1.42983 1.48281 1.56107 1.73006 2.16593 2.38798 2.86585 3.05616 3.24518 3.62061 3.67362 3.81973 4.12046 4.24689 4.26396 4.36943 4.51939 4.57882 4.65732 4.86353 4.88804 4.96643 5.00677 5.09591 5.10957 5.23549 5.25711 5.32775 5.38487 5.44466 5.47971 5.70800 5.83011 6.20713 6.64693 7.15230 7.23792 7.65980 8.83457 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.057960 B = 0.004327 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.975631 B = 6468.850108 C = 6847.654066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.989 3.011 4 H -0.284 1.284 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.286 3.714 10 N -0.720 5.720 11 C 0.704 3.296 12 O -0.651 6.651 13 N -0.641 5.641 14 C 0.089 3.911 15 C -0.106 4.106 16 C -0.061 4.061 17 H 0.083 0.917 18 C -0.142 4.142 19 C -0.166 4.166 20 C -0.193 4.193 21 C 0.128 3.872 22 H 0.270 0.730 23 H -0.015 1.015 24 H -0.016 1.016 25 H 0.403 0.597 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.642 -18.148 -0.744 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.812 3.188 4 H -0.210 1.210 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.374 5.374 11 C 0.405 3.595 12 O -0.535 6.535 13 N -0.380 5.380 14 C -0.033 4.033 15 C -0.144 4.144 16 C -0.080 4.080 17 H 0.101 0.899 18 C -0.160 4.160 19 C -0.203 4.203 20 C -0.230 4.230 21 C 0.005 3.995 22 H 0.078 0.922 23 H 0.002 0.998 24 H 0.002 0.998 25 H 0.238 0.762 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.139 0.861 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.568 -18.098 -0.740 22.632 hybrid contribution -0.183 1.050 -0.002 1.066 sum 13.385 -17.048 -0.742 21.687 Atomic orbital electron populations 1.70147 1.08357 1.28727 1.49736 1.26108 0.95810 1.03967 0.93697 0.85148 0.77864 0.76266 0.79558 1.20983 1.18546 1.18559 1.21549 0.94268 0.90371 1.53302 0.89857 1.18430 0.88103 0.83345 0.93877 1.45311 1.10851 1.03619 1.77595 1.15893 0.84257 0.81158 0.78156 1.90819 1.16516 1.84750 1.61374 1.47622 1.06990 1.05289 1.78052 1.22311 0.78243 1.00468 1.02328 1.22659 0.97661 0.90593 1.03456 1.21872 0.93359 0.92843 0.99905 0.89909 1.22166 1.03857 0.89344 1.00651 1.23082 0.99229 1.00534 0.97439 1.23018 0.92437 1.03027 1.04472 1.22160 0.98545 0.78097 1.00730 0.92156 0.99751 0.99758 0.76178 0.91071 0.90906 0.88850 0.87353 0.86136 0.88712 0.87283 0.87909 0.89917 0.91685 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.99 42.83 29.54 68.60 2.03 44.86 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.56 -31.32 9.28 25.60 0.24 -31.08 16 8 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 9 C 0.29 16.63 5.43 85.63 0.46 17.09 16 10 N -0.72 -33.75 5.51 -482.30 -2.66 -36.40 16 11 C 0.70 32.66 8.49 179.05 1.52 34.18 16 12 O -0.65 -36.76 16.60 -3.96 -0.07 -36.83 16 13 N -0.64 -21.53 3.33 -829.82 -2.76 -24.29 16 14 C 0.09 2.01 6.14 86.73 0.53 2.55 16 15 C -0.11 -1.57 6.42 31.78 0.20 -1.37 16 16 C -0.06 -1.10 3.20 -9.41 -0.03 -1.13 16 17 H 0.08 1.55 7.97 -2.39 -0.02 1.53 16 18 C -0.14 -2.00 5.24 -10.79 -0.06 -2.06 16 19 C -0.17 -2.02 10.20 30.62 0.31 -1.71 16 20 C -0.19 -2.91 10.00 30.62 0.31 -2.60 16 21 C 0.13 3.55 6.14 86.85 0.53 4.09 16 22 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 23 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 24 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 25 H 0.40 15.84 7.31 -92.71 -0.68 15.16 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.14 7.89 -2.38 -0.02 1.12 16 29 H 0.11 1.10 8.14 -2.39 -0.02 1.09 16 30 H 0.12 1.42 7.93 -2.39 -0.02 1.40 16 31 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 32 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.06 1.76 8.03 -2.39 -0.02 1.75 16 36 H 0.05 1.63 8.04 -2.39 -0.02 1.61 16 Total: -1.00 -75.72 301.87 1.69 -74.02 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.38 Total: 17.12 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 4.49 Total: 18.64 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -5.13 Total: -117.81 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -0.07 Total: -36.83 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -75.72 1.69 -74.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336197923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.235 kcal (2) G-P(sol) polarization free energy of solvation -75.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds