Wall clock time and date at job start Sun Mar 29 2020 21:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99746 * 2 1 4 4 H 1.48502 * 109.46895 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46971 * 299.99623 * 3 2 1 6 6 H 1.48494 * 109.47433 * 59.99799 * 3 2 1 7 7 C 1.37882 * 120.00414 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00239 * 196.64220 * 7 2 1 9 9 C 1.50700 * 119.99734 * 16.64647 * 7 2 1 10 10 C 1.52992 * 115.55314 * 39.76755 * 9 7 2 11 11 N 1.46502 * 109.47191 * 80.95243 * 10 9 7 12 12 C 1.34770 * 120.00271 * 184.90519 * 11 10 9 13 13 O 1.21586 * 120.00105 * 354.98564 * 12 11 10 14 14 N 1.34777 * 120.00063 * 174.98246 * 12 11 10 15 15 C 1.47022 * 125.64675 * 4.71131 * 14 12 11 16 16 C 1.54317 * 107.27168 * 180.96345 * 15 14 12 17 17 C 1.55150 * 102.86675 * 22.52706 * 16 15 14 18 18 C 1.47432 * 125.64633 * 185.01282 * 14 12 11 19 19 C 1.52998 * 117.49666 * 185.44260 * 9 7 2 20 20 C 1.53004 * 60.03146 * 107.49745 * 19 9 7 21 21 H 0.96993 * 120.00360 * 4.99191 * 1 2 3 22 22 H 1.08998 * 109.47617 * 200.95461 * 10 9 7 23 23 H 1.09002 * 109.47445 * 320.95817 * 10 9 7 24 24 H 0.97001 * 119.99456 * 4.90703 * 11 10 9 25 25 H 1.08996 * 109.87830 * 300.50938 * 15 14 12 26 26 H 1.08993 * 109.88215 * 61.67712 * 15 14 12 27 27 H 1.08994 * 110.92477 * 264.10630 * 16 15 14 28 28 H 1.09003 * 110.58629 * 140.78246 * 16 15 14 29 29 H 1.08996 * 111.00481 * 206.22685 * 17 16 15 30 30 H 1.09004 * 111.00593 * 82.37431 * 17 16 15 31 31 H 1.09003 * 110.36767 * 274.67459 * 18 14 12 32 32 H 1.08996 * 110.36753 * 36.89394 * 18 14 12 33 33 H 1.09002 * 117.49788 * 215.00049 * 19 9 7 34 34 H 1.09001 * 117.49793 * 359.97438 * 19 9 7 35 35 H 1.08997 * 117.49783 * 107.50657 * 20 19 9 36 36 H 1.09009 * 117.49699 * 252.51832 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0507 -1.2135 0.2684 9 6 1.2985 -2.4720 -0.3728 10 6 0.3088 -2.3640 -1.5344 11 7 1.0384 -2.4136 -2.8039 12 6 0.3805 -2.2361 -3.9666 13 8 -0.8303 -2.1259 -3.9694 14 7 1.0649 -2.1808 -5.1264 15 6 2.5113 -2.3957 -5.2789 16 6 2.8471 -2.2095 -6.7736 17 6 1.6709 -1.3371 -7.2859 18 6 0.4880 -1.8886 -6.4513 19 6 2.0811 -3.7789 -0.2306 20 6 0.9597 -3.4484 0.7564 21 1 -0.4850 0.8368 -0.0731 22 1 -0.3973 -3.1931 -1.4885 23 1 -0.2332 -1.4209 -1.4636 24 1 1.9950 -2.5743 -2.8074 25 1 3.0592 -1.6679 -4.6805 26 1 2.7708 -3.4069 -4.9659 27 1 2.8690 -3.1691 -7.2901 28 1 3.7956 -1.6854 -6.8909 29 1 1.5036 -1.4935 -8.3515 30 1 1.8434 -0.2827 -7.0697 31 1 0.0966 -2.7996 -6.9040 32 1 -0.2995 -1.1399 -6.3655 33 1 1.8909 -4.5619 -0.9648 34 1 3.1068 -3.7144 0.1325 35 1 0.0318 -4.0139 0.6717 36 1 1.2476 -3.1661 1.7692 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336479678.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:58 Heat of formation + Delta-G solvation = -4.960416 kcal Electronic energy + Delta-G solvation = -17427.212049 eV Core-core repulsion = 14719.087170 eV Total energy + Delta-G solvation = -2708.124879 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66834 -37.42539 -36.42170 -33.11219 -32.21894 -31.10537 -28.88428 -26.10682 -25.18922 -22.90971 -21.25646 -21.10068 -19.24036 -19.21940 -17.73891 -16.42300 -16.01402 -15.19928 -14.70747 -14.33578 -14.08559 -13.50704 -13.43588 -13.09322 -12.73122 -12.56557 -12.19721 -11.68410 -11.47918 -11.34546 -11.18821 -10.94594 -10.79051 -10.74887 -10.49501 -10.30337 -9.66969 -9.32051 -9.22609 -8.77055 -8.40940 -8.14463 -7.76440 -6.12361 -4.13339 3.17300 3.24888 3.34790 3.36953 3.87974 4.35772 4.47906 4.61700 4.81323 4.89250 5.03032 5.30906 5.40476 5.50952 5.66420 5.67995 5.80877 5.91583 6.00222 6.02521 6.14268 6.31993 6.54301 6.56133 6.61610 6.70907 6.95215 7.04899 7.29350 7.54079 7.58388 7.72741 7.95548 8.34801 8.70357 8.84550 9.32369 9.46679 10.91819 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.007918 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.804966 B = 3535.605612 C = 4027.309768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.073 3.927 3 Si 0.885 3.115 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.493 4.493 8 H 0.062 0.938 9 C 0.039 3.961 10 C 0.163 3.837 11 N -0.721 5.721 12 C 0.716 3.284 13 O -0.598 6.598 14 N -0.645 5.645 15 C 0.099 3.901 16 C -0.129 4.129 17 C -0.135 4.135 18 C 0.127 3.873 19 C -0.210 4.210 20 C -0.190 4.190 21 H 0.263 0.737 22 H 0.029 0.971 23 H 0.115 0.885 24 H 0.390 0.610 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.898 -3.730 -11.982 13.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.530 4.530 8 H 0.080 0.920 9 C 0.038 3.962 10 C 0.040 3.960 11 N -0.373 5.373 12 C 0.418 3.582 13 O -0.477 6.477 14 N -0.386 5.386 15 C -0.024 4.024 16 C -0.167 4.167 17 C -0.173 4.173 18 C 0.003 3.997 19 C -0.247 4.247 20 C -0.229 4.229 21 H 0.074 0.926 22 H 0.047 0.953 23 H 0.133 0.867 24 H 0.224 0.776 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.768 -3.506 -11.771 13.175 hybrid contribution 0.976 0.702 0.068 1.204 sum 5.744 -2.804 -11.703 13.335 Atomic orbital electron populations 1.69947 1.06030 1.27231 1.46879 1.24935 0.94648 0.99129 0.94358 0.86660 0.80402 0.83989 0.77746 1.19633 1.20811 1.20993 1.20515 0.95803 0.90054 1.46625 0.91986 1.19184 0.95403 0.88733 0.92899 1.21116 0.92853 1.03389 0.78593 1.45257 1.11555 1.75496 1.04971 1.15553 0.84874 0.78309 0.79484 1.90869 1.11923 1.59106 1.85827 1.47599 1.07953 1.76648 1.06396 1.21937 0.82373 1.00998 0.97115 1.22587 0.98896 1.00514 0.94672 1.22801 0.94871 1.00082 0.99524 1.21948 0.96096 0.99838 0.81829 1.22866 0.96242 1.01767 1.03875 1.22940 0.97191 1.06469 0.96257 0.92633 0.95294 0.86730 0.77648 0.91494 0.91962 0.90737 0.90225 0.90091 0.90632 0.92266 0.90740 0.91380 0.90522 0.91490 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.43 11.09 55.43 0.61 -23.81 16 2 C 0.07 1.97 5.12 -17.82 -0.09 1.88 16 3 Si 0.88 20.78 29.57 -169.99 -5.03 15.75 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.49 -13.04 8.98 -34.44 -0.31 -13.35 16 8 H 0.06 1.63 7.87 -52.49 -0.41 1.21 16 9 C 0.04 0.94 1.71 -155.63 -0.27 0.67 16 10 C 0.16 4.03 5.37 -4.04 -0.02 4.00 16 11 N -0.72 -15.56 5.47 -65.23 -0.36 -15.91 16 12 C 0.72 15.56 8.48 -86.92 -0.74 14.82 16 13 O -0.60 -15.33 16.65 5.29 0.09 -15.24 16 14 N -0.65 -10.85 3.33 -176.24 -0.59 -11.43 16 15 C 0.10 1.27 6.17 -3.07 -0.02 1.25 16 16 C -0.13 -1.20 6.95 -24.90 -0.17 -1.37 16 17 C -0.13 -1.34 7.08 -24.58 -0.17 -1.51 16 18 C 0.13 1.75 6.89 -2.52 -0.02 1.73 16 19 C -0.21 -4.38 9.81 -26.73 -0.26 -4.64 16 20 C -0.19 -4.30 9.89 -26.69 -0.26 -4.56 16 21 H 0.26 7.16 8.32 -40.82 -0.34 6.82 16 22 H 0.03 0.72 7.94 -51.93 -0.41 0.30 16 23 H 0.12 3.26 5.47 -51.93 -0.28 2.97 16 24 H 0.39 7.58 7.36 -40.82 -0.30 7.28 16 25 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.07 1.44 8.08 -51.93 -0.42 1.03 16 36 H 0.08 1.84 8.14 -51.92 -0.42 1.42 16 LS Contribution 298.38 15.07 4.50 4.50 Total: -1.00 -31.11 298.38 -8.72 -39.83 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.61 Total: 7.41 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.33 Total: -1.08 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.33 Total: -51.16 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.09 Total: -15.24 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.11 -8.72 -39.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336479678.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.865 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds