Wall clock time and date at job start Sun Mar 29 2020 21:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99746 * 2 1 4 4 H 1.48502 * 109.46895 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46971 * 299.99623 * 3 2 1 6 6 H 1.48494 * 109.47433 * 59.99799 * 3 2 1 7 7 C 1.37882 * 120.00414 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00239 * 196.64220 * 7 2 1 9 9 C 1.50700 * 119.99734 * 16.64647 * 7 2 1 10 10 C 1.52992 * 115.55314 * 39.76755 * 9 7 2 11 11 N 1.46502 * 109.47191 * 80.95243 * 10 9 7 12 12 C 1.34770 * 120.00271 * 184.90519 * 11 10 9 13 13 O 1.21586 * 120.00105 * 354.98564 * 12 11 10 14 14 N 1.34777 * 120.00063 * 174.98246 * 12 11 10 15 15 C 1.47022 * 125.64675 * 4.71131 * 14 12 11 16 16 C 1.54317 * 107.27168 * 180.96345 * 15 14 12 17 17 C 1.55150 * 102.86675 * 22.52706 * 16 15 14 18 18 C 1.47432 * 125.64633 * 185.01282 * 14 12 11 19 19 C 1.52998 * 117.49666 * 185.44260 * 9 7 2 20 20 C 1.53004 * 60.03146 * 107.49745 * 19 9 7 21 21 H 0.96993 * 120.00360 * 4.99191 * 1 2 3 22 22 H 1.08998 * 109.47617 * 200.95461 * 10 9 7 23 23 H 1.09002 * 109.47445 * 320.95817 * 10 9 7 24 24 H 0.97001 * 119.99456 * 4.90703 * 11 10 9 25 25 H 1.08996 * 109.87830 * 300.50938 * 15 14 12 26 26 H 1.08993 * 109.88215 * 61.67712 * 15 14 12 27 27 H 1.08994 * 110.92477 * 264.10630 * 16 15 14 28 28 H 1.09003 * 110.58629 * 140.78246 * 16 15 14 29 29 H 1.08996 * 111.00481 * 206.22685 * 17 16 15 30 30 H 1.09004 * 111.00593 * 82.37431 * 17 16 15 31 31 H 1.09003 * 110.36767 * 274.67459 * 18 14 12 32 32 H 1.08996 * 110.36753 * 36.89394 * 18 14 12 33 33 H 1.09002 * 117.49788 * 215.00049 * 19 9 7 34 34 H 1.09001 * 117.49793 * 359.97438 * 19 9 7 35 35 H 1.08997 * 117.49783 * 107.50657 * 20 19 9 36 36 H 1.09009 * 117.49699 * 252.51832 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0507 -1.2135 0.2684 9 6 1.2985 -2.4720 -0.3728 10 6 0.3088 -2.3640 -1.5344 11 7 1.0384 -2.4136 -2.8039 12 6 0.3805 -2.2361 -3.9666 13 8 -0.8303 -2.1259 -3.9694 14 7 1.0649 -2.1808 -5.1264 15 6 2.5113 -2.3957 -5.2789 16 6 2.8471 -2.2095 -6.7736 17 6 1.6709 -1.3371 -7.2859 18 6 0.4880 -1.8886 -6.4513 19 6 2.0811 -3.7789 -0.2306 20 6 0.9597 -3.4484 0.7564 21 1 -0.4850 0.8368 -0.0731 22 1 -0.3973 -3.1931 -1.4885 23 1 -0.2332 -1.4209 -1.4636 24 1 1.9950 -2.5743 -2.8074 25 1 3.0592 -1.6679 -4.6805 26 1 2.7708 -3.4069 -4.9659 27 1 2.8690 -3.1691 -7.2901 28 1 3.7956 -1.6854 -6.8909 29 1 1.5036 -1.4935 -8.3515 30 1 1.8434 -0.2827 -7.0697 31 1 0.0966 -2.7996 -6.9040 32 1 -0.2995 -1.1399 -6.3655 33 1 1.8909 -4.5619 -0.9648 34 1 3.1068 -3.7144 0.1325 35 1 0.0318 -4.0139 0.6717 36 1 1.2476 -3.1661 1.7692 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336479678.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:57 Heat of formation + Delta-G solvation = -24.904419 kcal Electronic energy + Delta-G solvation = -17428.076886 eV Core-core repulsion = 14719.087170 eV Total energy + Delta-G solvation = -2708.989716 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.16851 -38.94746 -38.05842 -34.88466 -34.24113 -32.32309 -29.90839 -27.97953 -27.07236 -24.22548 -22.98450 -22.01243 -21.12926 -20.76259 -19.28983 -17.99664 -17.45754 -16.89939 -16.60434 -15.95417 -15.66114 -15.15918 -14.54354 -14.48356 -14.11645 -13.93154 -13.75177 -13.40369 -13.18658 -12.85513 -12.69962 -12.31132 -12.16985 -12.12746 -12.07114 -11.56584 -11.49187 -11.23398 -11.11052 -10.63726 -10.15901 -9.94946 -9.36473 -8.15627 -6.21365 1.37934 1.42345 1.52267 1.72638 2.21063 2.40447 2.95085 3.19638 3.63431 3.72312 3.78557 4.10713 4.22954 4.33752 4.51295 4.52007 4.66747 4.69574 4.78588 4.89062 4.93206 4.94333 5.01783 5.08106 5.14534 5.23001 5.33333 5.47131 5.53399 5.57170 5.77179 5.90828 6.16879 6.34482 6.78867 7.12349 7.40654 7.65682 8.87571 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.007918 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.804966 B = 3535.605612 C = 4027.309768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.026 3.974 3 Si 0.944 3.056 4 H -0.258 1.258 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.500 4.500 8 H 0.063 0.937 9 C 0.008 3.992 10 C 0.177 3.823 11 N -0.715 5.715 12 C 0.707 3.293 13 O -0.648 6.648 14 N -0.644 5.644 15 C 0.088 3.912 16 C -0.116 4.116 17 C -0.122 4.122 18 C 0.114 3.886 19 C -0.174 4.174 20 C -0.196 4.196 21 H 0.259 0.741 22 H 0.018 0.982 23 H 0.075 0.925 24 H 0.402 0.598 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.436 -4.331 -13.556 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.770 3.230 4 H -0.182 1.182 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.537 4.537 8 H 0.081 0.919 9 C 0.007 3.993 10 C 0.053 3.947 11 N -0.368 5.368 12 C 0.408 3.592 13 O -0.531 6.531 14 N -0.383 5.383 15 C -0.034 4.034 16 C -0.154 4.154 17 C -0.160 4.160 18 C -0.009 4.009 19 C -0.211 4.211 20 C -0.234 4.234 21 H 0.069 0.931 22 H 0.036 0.964 23 H 0.093 0.907 24 H 0.237 0.763 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.382 -4.118 -13.382 15.828 hybrid contribution 0.180 0.837 0.533 1.009 sum 7.562 -3.281 -12.849 15.265 Atomic orbital electron populations 1.70086 1.07452 1.27543 1.48471 1.25649 0.95211 1.02202 0.94434 0.85723 0.79837 0.80221 0.77214 1.18207 1.21352 1.21021 1.20787 0.95808 0.91113 1.46001 0.91892 1.19181 0.96956 0.89600 0.93563 1.20670 0.92972 1.00761 0.80301 1.45019 1.11849 1.75687 1.04237 1.15806 0.84521 0.78182 0.80669 1.90819 1.14274 1.61229 1.86814 1.47698 1.09903 1.74921 1.05767 1.22287 0.79533 1.01553 1.00075 1.22615 0.99376 1.01707 0.91660 1.22792 0.93005 0.99713 1.00522 1.22259 0.97466 1.00027 0.81123 1.22870 0.96154 0.99532 1.02561 1.22945 0.98547 1.06058 0.95882 0.93117 0.96407 0.90662 0.76324 0.91938 0.90804 0.88724 0.87887 0.86857 0.91065 0.91159 0.93119 0.89353 0.89158 0.90933 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.26 11.09 21.45 0.24 -52.02 16 2 C 0.03 1.39 5.12 84.66 0.43 1.82 16 3 Si 0.94 42.90 29.57 68.60 2.03 44.93 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.50 -26.32 8.98 25.60 0.23 -26.09 16 8 H 0.06 3.23 7.87 -2.91 -0.02 3.20 16 9 C 0.01 0.38 1.71 -52.91 -0.09 0.29 16 10 C 0.18 8.95 5.37 86.38 0.46 9.41 16 11 N -0.71 -31.07 5.47 -478.55 -2.62 -33.69 16 12 C 0.71 31.25 8.48 179.06 1.52 32.77 16 13 O -0.65 -34.62 16.65 -3.99 -0.07 -34.68 16 14 N -0.64 -21.20 3.33 -829.77 -2.76 -23.96 16 15 C 0.09 2.02 6.17 86.73 0.53 2.56 16 16 C -0.12 -1.68 6.95 31.78 0.22 -1.46 16 17 C -0.12 -2.04 7.08 31.99 0.23 -1.81 16 18 C 0.11 3.03 6.89 86.86 0.60 3.63 16 19 C -0.17 -6.87 9.81 30.60 0.30 -6.57 16 20 C -0.20 -8.72 9.89 30.62 0.30 -8.42 16 21 H 0.26 14.61 8.32 -92.71 -0.77 13.84 16 22 H 0.02 0.91 7.94 -2.39 -0.02 0.89 16 23 H 0.08 4.47 5.47 -2.39 -0.01 4.46 16 24 H 0.40 15.28 7.36 -92.71 -0.68 14.59 16 25 H 0.06 1.51 8.11 -2.39 -0.02 1.49 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.57 8.08 -2.39 -0.02 1.55 16 33 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.07 3.11 8.08 -2.39 -0.02 3.09 16 36 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 Total: -1.00 -69.40 298.38 1.94 -67.46 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.38 Total: 25.83 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 4.74 Total: 6.14 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -5.14 Total: -109.67 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -0.07 Total: -34.68 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -69.40 1.94 -67.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336479678.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.555 kcal (2) G-P(sol) polarization free energy of solvation -69.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds