Wall clock time and date at job start Sun Mar 29 2020 22:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00271 * 2 1 4 4 C 1.53073 * 109.44618 * 119.79507 * 3 2 1 5 5 C 1.53192 * 109.29725 * 181.23934 * 4 3 2 6 6 N 1.46924 * 108.89241 * 305.57392 * 5 4 3 7 7 C 1.34776 * 120.63203 * 233.51595 * 6 5 4 8 8 O 1.21582 * 119.99896 * 354.96503 * 7 6 5 9 9 N 1.34777 * 119.99843 * 174.96422 * 7 6 5 10 10 C 1.46497 * 119.99973 * 185.07392 * 9 7 6 11 11 C 1.50696 * 109.47354 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99822 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00256 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00375 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99792 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47078 * 90.00512 * 15 13 11 17 17 H 1.48501 * 109.47255 * 210.00096 * 15 13 11 18 18 H 1.48499 * 109.47255 * 329.99979 * 15 13 11 19 19 C 1.46925 * 118.73744 * 53.54010 * 6 5 4 20 20 C 1.53041 * 109.46064 * 239.99977 * 3 2 1 21 21 H 1.07999 * 120.00090 * 0.02562 * 1 2 3 22 22 H 1.08001 * 119.99901 * 179.97438 * 1 2 3 23 23 H 1.08008 * 120.00094 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46123 * 359.97005 * 3 2 1 25 25 H 1.08999 * 109.39306 * 61.35620 * 4 3 2 26 26 H 1.09009 * 109.61999 * 301.25533 * 4 3 2 27 27 H 1.09003 * 109.58450 * 185.71848 * 5 4 3 28 28 H 1.09003 * 109.58576 * 65.43905 * 5 4 3 29 29 H 0.96995 * 119.99714 * 5.07108 * 9 7 6 30 30 H 1.09002 * 109.47105 * 299.99845 * 10 9 7 31 31 H 1.09006 * 109.47104 * 59.99560 * 10 9 7 32 32 H 0.96997 * 120.00213 * 179.97438 * 14 13 11 33 33 H 1.09007 * 109.58969 * 66.17689 * 19 6 5 34 34 H 1.09002 * 109.59022 * 186.46095 * 19 6 5 35 35 H 1.08996 * 109.50055 * 58.67531 * 20 3 2 36 36 H 1.08997 * 109.52573 * 298.58857 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9395 1.3878 1.2526 5 6 3.6802 2.7286 1.2648 6 7 4.4143 2.8781 0.0009 7 6 5.7348 3.1481 0.0016 8 8 6.3112 3.3608 1.0507 9 7 6.4161 3.1822 -1.1608 10 6 7.8696 3.3651 -1.1527 11 6 8.3835 3.3676 -2.5693 12 1 7.6962 3.2447 -3.3933 13 6 9.7313 3.5256 -2.8135 14 7 10.1798 3.5272 -4.0498 15 14 10.9201 3.7373 -1.3883 16 1 11.4090 2.4054 -0.9495 17 1 12.0713 4.5684 -1.8232 18 1 10.2252 4.4062 -0.2592 19 6 3.6815 2.7282 -1.2637 20 6 2.9433 1.3858 -1.2496 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9354 0.0004 24 1 1.3551 2.1335 -0.0005 25 1 3.6629 0.5725 1.2428 26 1 2.3144 1.3093 2.1422 27 1 4.3810 2.7514 2.0993 28 1 2.9619 3.5419 1.3686 29 1 5.9441 3.0856 -2.0026 30 1 8.1137 4.3146 -0.6764 31 1 8.3353 2.5502 -0.5982 32 1 11.1279 3.6388 -4.2216 33 1 2.9615 3.5400 -1.3674 34 1 4.3829 2.7531 -2.0977 35 1 2.3194 1.3045 -2.1397 36 1 3.6684 0.5721 -1.2379 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336480564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:25 Heat of formation + Delta-G solvation = -14.941761 kcal Electronic energy + Delta-G solvation = -16967.023171 eV Core-core repulsion = 14258.465468 eV Total energy + Delta-G solvation = -2708.557703 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.00370 -37.76314 -34.56010 -34.34846 -32.41168 -31.02035 -30.89081 -27.77403 -25.06685 -23.31958 -22.10530 -20.89437 -19.97930 -19.23999 -18.12837 -16.43509 -15.76348 -15.27053 -15.07517 -14.56131 -14.36903 -14.22495 -13.68625 -13.58057 -13.07388 -12.72704 -12.49312 -12.26803 -12.12336 -11.97808 -11.31041 -10.97153 -10.94063 -10.92992 -10.73287 -10.51585 -9.93632 -9.57473 -9.43844 -9.40441 -8.75337 -8.49184 -7.91939 -6.18762 -4.20486 2.07855 3.13712 3.29821 3.36765 3.45982 3.78678 4.36394 4.49112 4.53413 4.74245 4.82063 5.06472 5.08887 5.16978 5.25017 5.29076 5.44154 5.55231 5.61913 5.78260 5.82724 5.84654 5.98990 6.00819 6.22070 6.42699 6.58830 6.69199 6.87322 7.14984 7.28546 7.43208 7.54838 8.28471 8.69529 8.82161 9.22672 9.43167 10.93232 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.043928 B = 0.005056 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.248966 B = 5537.189050 C = 5926.287774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C -0.061 4.061 4 C -0.126 4.126 5 C 0.131 3.869 6 N -0.637 5.637 7 C 0.699 3.301 8 O -0.603 6.603 9 N -0.723 5.723 10 C 0.237 3.763 11 C -0.542 4.542 12 H 0.078 0.922 13 C 0.078 3.922 14 N -0.894 5.894 15 Si 0.877 3.123 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.260 1.260 19 C 0.112 3.888 20 C -0.126 4.126 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.107 0.893 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.391 0.609 30 H 0.024 0.976 31 H 0.017 0.983 32 H 0.267 0.733 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.281 -4.996 6.681 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.160 4.160 3 C -0.079 4.079 4 C -0.164 4.164 5 C 0.008 3.992 6 N -0.376 5.376 7 C 0.400 3.600 8 O -0.482 6.482 9 N -0.378 5.378 10 C 0.115 3.885 11 C -0.580 4.580 12 H 0.096 0.904 13 C -0.126 4.126 14 N -0.531 5.531 15 Si 0.703 3.297 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.184 1.184 19 C -0.012 4.012 20 C -0.164 4.164 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.125 0.875 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.227 0.773 30 H 0.042 0.958 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.615 -4.817 7.315 19.672 hybrid contribution 0.403 -0.065 0.073 0.415 sum -17.212 -4.882 7.388 19.356 Atomic orbital electron populations 1.23820 0.95908 1.01667 1.02076 1.22985 0.95840 0.98344 0.98846 1.20358 0.96693 0.95457 0.95431 1.21960 0.98618 0.98498 0.97324 1.21331 0.95220 0.95786 0.86893 1.47259 1.07268 1.76520 1.06541 1.16027 0.80628 0.78290 0.85034 1.90842 1.68177 1.57967 1.31234 1.45566 1.09975 1.76264 1.05974 1.19360 0.74895 0.96342 0.97948 1.21088 0.94018 1.52129 0.90725 0.90378 1.24775 0.98009 0.93969 0.95832 1.69880 1.14992 1.49244 1.19001 0.86813 0.80806 0.78985 0.83080 1.19877 1.20940 1.18392 1.21585 0.95980 0.96901 0.86711 1.21928 0.98790 0.98150 0.97555 0.88680 0.88688 0.87461 0.90746 0.91334 0.90897 0.88919 0.92320 0.77272 0.95842 0.96499 0.92294 0.91701 0.89815 0.90745 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 14.32 29.02 0.42 -1.12 16 2 C -0.14 -1.23 8.77 -36.02 -0.32 -1.55 16 3 C -0.06 -0.57 2.43 -91.71 -0.22 -0.79 16 4 C -0.13 -1.31 5.35 -26.59 -0.14 -1.46 16 5 C 0.13 1.71 6.41 -3.71 -0.02 1.69 16 6 N -0.64 -9.87 2.97 -178.49 -0.53 -10.40 16 7 C 0.70 14.45 8.30 -86.92 -0.72 13.73 16 8 O -0.60 -14.69 15.79 5.29 0.08 -14.61 16 9 N -0.72 -15.51 5.46 -66.42 -0.36 -15.87 16 10 C 0.24 6.03 4.50 -5.20 -0.02 6.01 16 11 C -0.54 -15.09 9.83 -34.44 -0.34 -15.43 16 12 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 13 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 14 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 15 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 19 C 0.11 1.35 6.43 -3.71 -0.02 1.33 16 20 C -0.13 -1.29 5.35 -26.61 -0.14 -1.43 16 21 H 0.09 0.68 7.83 -52.49 -0.41 0.27 16 22 H 0.09 0.64 8.06 -52.49 -0.42 0.22 16 23 H 0.11 0.92 8.06 -52.48 -0.42 0.49 16 24 H 0.07 0.66 7.78 -51.93 -0.40 0.26 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.09 1.39 7.04 -51.93 -0.37 1.02 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.39 7.44 5.78 -40.82 -0.24 7.20 16 30 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 31 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.08 1.05 5.56 -51.93 -0.29 0.76 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 293.45 15.07 4.42 4.42 Total: -1.00 -32.44 293.45 -7.35 -39.79 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.43 Total: 2.45 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -1.64 Total: 3.10 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.12 Total: -52.22 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.08 Total: -14.61 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.44 -7.35 -39.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336480564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.847 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds