Wall clock time and date at job start Sun Mar 29 2020 22:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00271 * 2 1 4 4 C 1.53073 * 109.44618 * 119.79507 * 3 2 1 5 5 C 1.53192 * 109.29725 * 181.23934 * 4 3 2 6 6 N 1.46924 * 108.89241 * 305.57392 * 5 4 3 7 7 C 1.34776 * 120.63203 * 233.51595 * 6 5 4 8 8 O 1.21582 * 119.99896 * 354.96503 * 7 6 5 9 9 N 1.34777 * 119.99843 * 174.96422 * 7 6 5 10 10 C 1.46497 * 119.99973 * 185.07392 * 9 7 6 11 11 C 1.50696 * 109.47354 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99822 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00256 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00375 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99792 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47078 * 90.00512 * 15 13 11 17 17 H 1.48501 * 109.47255 * 210.00096 * 15 13 11 18 18 H 1.48499 * 109.47255 * 329.99979 * 15 13 11 19 19 C 1.46925 * 118.73744 * 53.54010 * 6 5 4 20 20 C 1.53041 * 109.46064 * 239.99977 * 3 2 1 21 21 H 1.07999 * 120.00090 * 0.02562 * 1 2 3 22 22 H 1.08001 * 119.99901 * 179.97438 * 1 2 3 23 23 H 1.08008 * 120.00094 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46123 * 359.97005 * 3 2 1 25 25 H 1.08999 * 109.39306 * 61.35620 * 4 3 2 26 26 H 1.09009 * 109.61999 * 301.25533 * 4 3 2 27 27 H 1.09003 * 109.58450 * 185.71848 * 5 4 3 28 28 H 1.09003 * 109.58576 * 65.43905 * 5 4 3 29 29 H 0.96995 * 119.99714 * 5.07108 * 9 7 6 30 30 H 1.09002 * 109.47105 * 299.99845 * 10 9 7 31 31 H 1.09006 * 109.47104 * 59.99560 * 10 9 7 32 32 H 0.96997 * 120.00213 * 179.97438 * 14 13 11 33 33 H 1.09007 * 109.58969 * 66.17689 * 19 6 5 34 34 H 1.09002 * 109.59022 * 186.46095 * 19 6 5 35 35 H 1.08996 * 109.50055 * 58.67531 * 20 3 2 36 36 H 1.08997 * 109.52573 * 298.58857 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9395 1.3878 1.2526 5 6 3.6802 2.7286 1.2648 6 7 4.4143 2.8781 0.0009 7 6 5.7348 3.1481 0.0016 8 8 6.3112 3.3608 1.0507 9 7 6.4161 3.1822 -1.1608 10 6 7.8696 3.3651 -1.1527 11 6 8.3835 3.3676 -2.5693 12 1 7.6962 3.2447 -3.3933 13 6 9.7313 3.5256 -2.8135 14 7 10.1798 3.5272 -4.0498 15 14 10.9201 3.7373 -1.3883 16 1 11.4090 2.4054 -0.9495 17 1 12.0713 4.5684 -1.8232 18 1 10.2252 4.4062 -0.2592 19 6 3.6815 2.7282 -1.2637 20 6 2.9433 1.3858 -1.2496 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9354 0.0004 24 1 1.3551 2.1335 -0.0005 25 1 3.6629 0.5725 1.2428 26 1 2.3144 1.3093 2.1422 27 1 4.3810 2.7514 2.0993 28 1 2.9619 3.5419 1.3686 29 1 5.9441 3.0856 -2.0026 30 1 8.1137 4.3146 -0.6764 31 1 8.3353 2.5502 -0.5982 32 1 11.1279 3.6388 -4.2216 33 1 2.9615 3.5400 -1.3674 34 1 4.3829 2.7531 -2.0977 35 1 2.3194 1.3045 -2.1397 36 1 3.6684 0.5721 -1.2379 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336480564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:24 Heat of formation + Delta-G solvation = -36.393213 kcal Electronic energy + Delta-G solvation = -16967.953376 eV Core-core repulsion = 14258.465468 eV Total energy + Delta-G solvation = -2709.487908 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38918 -38.95560 -36.24698 -35.60044 -34.42136 -32.12807 -31.82962 -29.68525 -26.20449 -24.49581 -23.76773 -22.15520 -20.74620 -20.63649 -19.55406 -18.41758 -17.31770 -16.64858 -16.46989 -15.79246 -15.41602 -15.36017 -15.10458 -14.92014 -14.57884 -14.35475 -14.03102 -13.50482 -13.30311 -13.01377 -12.92691 -12.69662 -12.21792 -11.93428 -11.82693 -11.68271 -11.63573 -11.42548 -11.11749 -10.91711 -10.14646 -10.12090 -9.41506 -8.39923 -6.46840 1.33395 1.35234 1.46333 1.49179 1.76531 2.16894 2.29062 2.95581 3.10820 3.76868 3.81468 3.95027 4.16170 4.34029 4.37786 4.47741 4.53304 4.68485 4.74573 4.85556 4.90077 4.95469 5.03088 5.04415 5.14819 5.15403 5.24784 5.41845 5.54199 5.64883 5.82017 5.91992 5.98200 6.20264 6.54153 7.08554 7.19331 7.62775 8.74793 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.043928 B = 0.005056 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.248966 B = 5537.189050 C = 5926.287774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C -0.055 4.055 4 C -0.117 4.117 5 C 0.126 3.874 6 N -0.628 5.628 7 C 0.694 3.306 8 O -0.645 6.645 9 N -0.724 5.724 10 C 0.251 3.749 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.029 3.971 14 N -0.930 5.930 15 Si 0.937 3.063 16 H -0.264 1.264 17 H -0.271 1.271 18 H -0.262 1.262 19 C 0.106 3.894 20 C -0.120 4.120 21 H 0.104 0.896 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.402 0.598 30 H 0.009 0.991 31 H 0.008 0.992 32 H 0.273 0.727 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.148 -5.231 7.290 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.175 4.175 3 C -0.073 4.073 4 C -0.155 4.155 5 C 0.003 3.997 6 N -0.365 5.365 7 C 0.396 3.604 8 O -0.528 6.528 9 N -0.380 5.380 10 C 0.127 3.873 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.172 4.172 14 N -0.569 5.569 15 Si 0.761 3.239 16 H -0.189 1.189 17 H -0.196 1.196 18 H -0.187 1.187 19 C -0.017 4.017 20 C -0.159 4.159 21 H 0.123 0.877 22 H 0.123 0.877 23 H 0.122 0.878 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.240 0.760 30 H 0.027 0.973 31 H 0.025 0.975 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.554 -5.072 7.903 21.692 hybrid contribution 0.841 -0.009 -0.155 0.855 sum -18.713 -5.081 7.747 20.881 Atomic orbital electron populations 1.24002 0.95561 1.02636 1.00018 1.22895 0.96186 0.97769 1.00691 1.20310 0.96460 0.96554 0.93982 1.21898 0.98424 0.96062 0.99157 1.21561 0.94950 0.98293 0.84859 1.47343 1.05571 1.74706 1.08904 1.16184 0.82213 0.78157 0.83895 1.90804 1.69700 1.59823 1.32444 1.45311 1.08670 1.76869 1.07121 1.18948 0.77240 0.95140 0.95981 1.21248 0.94055 1.51758 0.91335 0.92338 1.25557 0.99764 0.93642 0.98193 1.69973 1.15797 1.50251 1.20855 0.85861 0.78846 0.79407 0.79802 1.18920 1.19611 1.18652 1.21871 0.96052 0.99108 0.84652 1.21896 0.98651 0.96121 0.99189 0.87727 0.87741 0.87850 0.89268 0.93040 0.88782 0.91353 0.89887 0.75964 0.97287 0.97455 0.91781 0.89144 0.90648 0.88642 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 14.32 67.79 0.97 -1.28 16 2 C -0.16 -2.31 8.77 25.65 0.22 -2.08 16 3 C -0.05 -0.87 2.43 -11.50 -0.03 -0.90 16 4 C -0.12 -2.23 5.35 30.68 0.16 -2.06 16 5 C 0.13 3.11 6.41 86.36 0.55 3.66 16 6 N -0.63 -18.88 2.97 -836.89 -2.49 -21.37 16 7 C 0.69 28.82 8.30 179.05 1.49 30.31 16 8 O -0.64 -31.94 15.79 -3.97 -0.06 -32.00 16 9 N -0.72 -31.34 5.46 -482.30 -2.63 -33.97 16 10 C 0.25 12.93 4.50 85.63 0.39 13.32 16 11 C -0.55 -30.88 9.83 25.60 0.25 -30.62 16 12 H 0.06 3.46 7.84 -2.91 -0.02 3.43 16 13 C 0.03 1.66 5.47 84.65 0.46 2.12 16 14 N -0.93 -55.95 13.96 21.45 0.30 -55.66 16 15 Si 0.94 44.87 27.47 68.60 1.88 46.75 16 16 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.26 -12.59 6.54 99.48 0.65 -11.94 16 19 C 0.11 2.35 6.43 86.36 0.56 2.91 16 20 C -0.12 -2.19 5.35 30.67 0.16 -2.03 16 21 H 0.10 1.09 7.83 -2.91 -0.02 1.06 16 22 H 0.10 1.08 8.06 -2.91 -0.02 1.06 16 23 H 0.10 1.59 8.06 -2.91 -0.02 1.56 16 24 H 0.09 1.21 7.78 -2.39 -0.02 1.19 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.07 2.04 7.04 -2.39 -0.02 2.03 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.40 15.39 5.78 -92.71 -0.54 14.86 16 30 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 31 H 0.01 0.40 7.57 -2.38 -0.02 0.38 16 32 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.08 1.81 5.56 -2.39 -0.01 1.80 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -69.98 293.45 2.65 -67.33 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.47 Total: 15.57 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 5.19 Total: 13.34 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -4.82 Total: -110.99 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.06 Total: -32.00 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -69.98 2.65 -67.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336480564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.932 kcal (2) G-P(sol) polarization free energy of solvation -69.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds