Wall clock time and date at job start Sun Mar 29 2020 21:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47426 * 299.99938 * 3 2 1 6 6 H 1.48497 * 109.47269 * 60.00195 * 3 2 1 7 7 C 1.38814 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82120 * 359.91271 * 9 7 2 11 11 C 1.54909 * 104.83995 * 155.82347 * 10 9 7 12 12 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 13 13 H 1.08995 * 110.87585 * 82.93006 * 12 11 10 14 14 C 1.50700 * 110.71873 * 206.13106 * 12 11 10 15 15 O 1.21276 * 120.00216 * 354.97735 * 14 12 11 16 16 N 1.34777 * 120.00043 * 174.97081 * 14 12 11 17 17 C 1.47030 * 125.64607 * 359.69683 * 16 14 12 18 18 C 1.54312 * 107.27156 * 180.96336 * 17 16 14 19 19 C 1.55160 * 102.86701 * 22.52957 * 18 17 16 20 20 C 1.47426 * 125.65040 * 179.97438 * 16 14 12 21 21 C 1.47020 * 125.64749 * 180.02562 * 9 7 2 22 22 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.29227 * 37.02208 * 10 9 7 24 24 H 1.08996 * 110.53057 * 274.75420 * 10 9 7 25 25 H 1.08994 * 111.00889 * 279.01887 * 11 10 9 26 26 H 1.09006 * 111.00238 * 155.16698 * 11 10 9 27 27 H 1.08994 * 109.87814 * 300.51101 * 17 16 14 28 28 H 1.08996 * 109.88301 * 61.67637 * 17 16 14 29 29 H 1.08995 * 110.92961 * 264.10461 * 18 17 16 30 30 H 1.09005 * 110.58823 * 140.78822 * 18 17 16 31 31 H 1.08998 * 111.00031 * 206.22689 * 19 18 17 32 32 H 1.08996 * 111.00458 * 82.37554 * 19 18 17 33 33 H 1.09001 * 110.36650 * 274.68041 * 20 16 14 34 34 H 1.08995 * 110.36320 * 37.00057 * 20 16 14 35 35 H 1.09002 * 109.88367 * 61.61048 * 21 9 7 36 36 H 1.09000 * 109.88319 * 300.59666 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5379 0.0018 11 6 -0.4016 -3.9366 -0.6124 12 6 0.7805 -4.7551 -0.0292 13 1 0.5514 -5.1052 0.9772 14 6 1.1222 -5.9140 -0.9299 15 8 0.4378 -6.1477 -1.9034 16 7 2.1886 -6.6906 -0.6537 17 6 3.1031 -6.5171 0.4845 18 6 4.1796 -7.6177 0.3791 19 6 4.1438 -7.9930 -1.1260 20 6 2.6345 -7.8513 -1.4458 21 6 1.9316 -3.7276 -0.0005 22 1 -0.4849 0.8401 0.0004 23 1 -0.6042 -1.7636 -0.6122 24 1 -0.5315 -2.4935 1.0198 25 1 -0.3527 -3.9005 -1.7006 26 1 -1.3579 -4.3398 -0.2790 27 1 3.5701 -5.5334 0.4380 28 1 2.5550 -6.6258 1.4203 29 1 3.9197 -8.4769 0.9972 30 1 5.1580 -7.2245 0.6553 31 1 4.4813 -9.0178 -1.2811 32 1 4.7361 -7.2945 -1.7170 33 1 2.0958 -8.7484 -1.1405 34 1 2.4882 -7.6633 -2.5094 35 1 2.5285 -3.8644 0.9012 36 1 2.5598 -3.8502 -0.8828 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336520846.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:30 Heat of formation + Delta-G solvation = -9.096329 kcal Electronic energy + Delta-G solvation = -17487.666084 eV Core-core repulsion = 14779.361858 eV Total energy + Delta-G solvation = -2708.304226 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.00925 -37.56507 -36.46984 -32.66165 -31.56805 -29.55497 -29.14056 -27.62814 -24.89449 -23.62970 -21.32680 -20.76963 -20.12957 -18.81416 -16.88906 -16.77839 -16.33393 -15.55988 -14.66857 -14.33921 -13.88548 -13.57029 -13.38058 -13.33418 -12.50493 -12.43055 -12.27545 -11.84575 -11.58642 -11.40579 -11.32553 -10.99992 -10.89042 -10.82258 -10.47589 -10.26767 -10.07406 -9.81462 -9.59383 -9.34883 -8.64719 -8.50742 -6.84226 -5.65043 -3.07304 2.94137 3.15784 3.40401 3.45362 3.48228 4.38958 4.47826 4.51284 4.77397 5.03651 5.18687 5.26583 5.34355 5.43101 5.55880 5.57897 5.59116 5.69867 5.77111 5.84212 5.88619 5.90496 6.02514 6.38479 6.40111 6.50633 6.61403 6.69250 6.87890 7.54386 7.62488 7.67606 7.87107 8.36348 8.45307 9.21130 9.81993 10.47128 11.39272 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035092 B = 0.006239 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.711253 B = 4486.950657 C = 5003.628058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.150 3.850 11 C -0.122 4.122 12 C -0.120 4.120 13 H 0.095 0.905 14 C 0.545 3.455 15 O -0.541 6.541 16 N -0.624 5.624 17 C 0.096 3.904 18 C -0.131 4.131 19 C -0.134 4.134 20 C 0.104 3.896 21 C 0.153 3.847 22 H 0.252 0.748 23 H 0.109 0.891 24 H 0.015 0.985 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.026 0.974 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.759 -15.053 1.573 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.025 3.975 11 C -0.161 4.161 12 C -0.142 4.142 13 H 0.113 0.887 14 C 0.334 3.666 15 O -0.418 6.418 16 N -0.359 5.359 17 C -0.027 4.027 18 C -0.169 4.169 19 C -0.172 4.172 20 C -0.018 4.018 21 C 0.026 3.974 22 H 0.063 0.937 23 H 0.126 0.874 24 H 0.033 0.967 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 6.278 -14.884 1.037 16.187 hybrid contribution 0.536 0.726 0.198 0.924 sum 6.814 -14.158 1.234 15.761 Atomic orbital electron populations 1.69812 1.04918 1.24733 1.57423 1.24801 0.95735 0.97744 1.02313 0.85989 0.78607 0.83556 0.77272 1.20535 1.21689 1.21720 1.19108 0.90497 0.82314 1.43281 0.90398 1.44577 1.02045 0.99446 1.86863 1.22043 0.84476 0.92690 0.98284 1.22942 0.94741 0.97261 1.01180 1.22369 1.00102 0.93052 0.98653 0.88710 1.20485 0.78298 0.82240 0.85558 1.90649 1.50327 1.71574 1.29214 1.48555 1.28607 1.30571 1.28216 1.22155 0.91137 1.00007 0.89428 1.22636 0.99067 0.98479 0.96760 1.22794 0.95770 1.02292 0.96361 1.22171 0.93906 0.88745 0.97025 1.21143 0.92609 0.85715 0.97913 0.93707 0.87367 0.96736 0.90953 0.91994 0.90402 0.91369 0.90677 0.89965 0.90042 0.90507 0.91832 0.90597 0.95582 0.95984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.16 10.11 55.49 0.56 -26.60 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.22 -6.31 10.28 -15.05 -0.15 -6.46 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.81 3.41 -169.81 -0.58 -16.38 16 10 C 0.15 3.77 5.91 -2.35 -0.01 3.75 16 11 C -0.12 -2.59 6.14 -24.58 -0.15 -2.74 16 12 C -0.12 -2.28 2.84 -89.94 -0.26 -2.53 16 13 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 14 C 0.54 10.03 7.08 -10.99 -0.08 9.96 16 15 O -0.54 -11.65 16.02 5.56 0.09 -11.56 16 16 N -0.62 -9.11 3.33 -170.51 -0.57 -9.68 16 17 C 0.10 1.11 6.07 -3.07 -0.02 1.09 16 18 C -0.13 -1.10 6.95 -24.90 -0.17 -1.27 16 19 C -0.13 -1.17 7.08 -24.57 -0.17 -1.34 16 20 C 0.10 1.24 6.91 -2.52 -0.02 1.22 16 21 C 0.15 3.24 5.28 -3.06 -0.02 3.22 16 22 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.11 3.06 5.88 -51.93 -0.31 2.75 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 1.65 7.49 -51.93 -0.39 1.26 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.08 0.97 6.22 -51.93 -0.32 0.65 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.99 8.04 -51.93 -0.42 0.58 16 35 H 0.03 0.52 7.23 -51.93 -0.38 0.14 16 36 H 0.02 0.49 7.81 -51.93 -0.41 0.08 16 LS Contribution 285.84 15.07 4.31 4.31 Total: -1.00 -32.67 285.84 -7.93 -40.60 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.57 Total: -2.32 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -1.15 Total: 4.50 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.58 Total: -52.66 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.67 -7.93 -40.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336520846.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.502 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds