Wall clock time and date at job start Sun Mar 29 2020 21:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47426 * 299.99938 * 3 2 1 6 6 H 1.48497 * 109.47269 * 60.00195 * 3 2 1 7 7 C 1.38814 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82120 * 359.91271 * 9 7 2 11 11 C 1.54909 * 104.83995 * 155.82347 * 10 9 7 12 12 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 13 13 H 1.08995 * 110.87585 * 82.93006 * 12 11 10 14 14 C 1.50700 * 110.71873 * 206.13106 * 12 11 10 15 15 O 1.21276 * 120.00216 * 354.97735 * 14 12 11 16 16 N 1.34777 * 120.00043 * 174.97081 * 14 12 11 17 17 C 1.47030 * 125.64607 * 359.69683 * 16 14 12 18 18 C 1.54312 * 107.27156 * 180.96336 * 17 16 14 19 19 C 1.55160 * 102.86701 * 22.52957 * 18 17 16 20 20 C 1.47426 * 125.65040 * 179.97438 * 16 14 12 21 21 C 1.47020 * 125.64749 * 180.02562 * 9 7 2 22 22 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.29227 * 37.02208 * 10 9 7 24 24 H 1.08996 * 110.53057 * 274.75420 * 10 9 7 25 25 H 1.08994 * 111.00889 * 279.01887 * 11 10 9 26 26 H 1.09006 * 111.00238 * 155.16698 * 11 10 9 27 27 H 1.08994 * 109.87814 * 300.51101 * 17 16 14 28 28 H 1.08996 * 109.88301 * 61.67637 * 17 16 14 29 29 H 1.08995 * 110.92961 * 264.10461 * 18 17 16 30 30 H 1.09005 * 110.58823 * 140.78822 * 18 17 16 31 31 H 1.08998 * 111.00031 * 206.22689 * 19 18 17 32 32 H 1.08996 * 111.00458 * 82.37554 * 19 18 17 33 33 H 1.09001 * 110.36650 * 274.68041 * 20 16 14 34 34 H 1.08995 * 110.36320 * 37.00057 * 20 16 14 35 35 H 1.09002 * 109.88367 * 61.61048 * 21 9 7 36 36 H 1.09000 * 109.88319 * 300.59666 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5379 0.0018 11 6 -0.4016 -3.9366 -0.6124 12 6 0.7805 -4.7551 -0.0292 13 1 0.5514 -5.1052 0.9772 14 6 1.1222 -5.9140 -0.9299 15 8 0.4378 -6.1477 -1.9034 16 7 2.1886 -6.6906 -0.6537 17 6 3.1031 -6.5171 0.4845 18 6 4.1796 -7.6177 0.3791 19 6 4.1438 -7.9930 -1.1260 20 6 2.6345 -7.8513 -1.4458 21 6 1.9316 -3.7276 -0.0005 22 1 -0.4849 0.8401 0.0004 23 1 -0.6042 -1.7636 -0.6122 24 1 -0.5315 -2.4935 1.0198 25 1 -0.3527 -3.9005 -1.7006 26 1 -1.3579 -4.3398 -0.2790 27 1 3.5701 -5.5334 0.4380 28 1 2.5550 -6.6258 1.4203 29 1 3.9197 -8.4769 0.9972 30 1 5.1580 -7.2245 0.6553 31 1 4.4813 -9.0178 -1.2811 32 1 4.7361 -7.2945 -1.7170 33 1 2.0958 -8.7484 -1.1405 34 1 2.4882 -7.6633 -2.5094 35 1 2.5285 -3.8644 0.9012 36 1 2.5598 -3.8502 -0.8828 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336520846.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:30 Heat of formation + Delta-G solvation = -30.357069 kcal Electronic energy + Delta-G solvation = -17488.588019 eV Core-core repulsion = 14779.361858 eV Total energy + Delta-G solvation = -2709.226161 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33630 -38.91253 -38.06162 -34.62106 -32.73536 -31.40507 -30.29637 -29.16044 -26.83099 -24.91471 -22.35905 -22.26787 -21.82682 -20.14314 -18.85533 -18.17362 -17.32093 -17.11457 -16.63293 -15.95669 -15.22788 -15.07544 -14.48999 -14.38209 -14.20137 -13.78811 -13.66279 -13.51817 -13.20473 -12.95138 -12.75091 -12.23437 -12.18892 -12.07945 -12.01934 -11.96871 -11.83447 -11.55886 -11.46368 -10.93065 -10.72002 -9.67478 -8.92862 -7.79013 -5.24385 1.46998 1.49027 1.51884 1.59324 1.97933 2.49187 3.31023 3.38996 3.64890 3.68159 3.72633 3.97732 4.02955 4.10855 4.27825 4.35660 4.50971 4.58761 4.65151 4.75137 4.86481 4.90066 4.96174 4.98149 5.01985 5.11252 5.16544 5.30746 5.44714 5.45500 5.59377 5.76676 6.26970 6.43158 7.06529 7.08710 7.73663 8.38626 9.24240 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035092 B = 0.006239 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.711253 B = 4486.950657 C = 5003.628058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.240 4.240 8 H 0.085 0.915 9 N -0.627 5.627 10 C 0.155 3.845 11 C -0.112 4.112 12 C -0.108 4.108 13 H 0.122 0.878 14 C 0.541 3.459 15 O -0.582 6.582 16 N -0.620 5.620 17 C 0.084 3.916 18 C -0.121 4.121 19 C -0.124 4.124 20 C 0.094 3.906 21 C 0.156 3.844 22 H 0.248 0.752 23 H 0.073 0.927 24 H 0.002 0.998 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.780 -16.657 2.639 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.812 3.188 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.369 4.369 8 H 0.103 0.897 9 N -0.353 5.353 10 C 0.030 3.970 11 C -0.151 4.151 12 C -0.129 4.129 13 H 0.139 0.861 14 C 0.330 3.670 15 O -0.463 6.463 16 N -0.353 5.353 17 C -0.038 4.038 18 C -0.158 4.158 19 C -0.162 4.162 20 C -0.027 4.027 21 C 0.031 3.969 22 H 0.058 0.942 23 H 0.091 0.909 24 H 0.020 0.980 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.129 0.871 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 8.360 -16.536 2.126 18.651 hybrid contribution -0.059 1.164 -0.132 1.173 sum 8.301 -15.372 1.993 17.584 Atomic orbital electron populations 1.70060 1.06376 1.25118 1.58419 1.25691 0.96654 1.01162 1.02479 0.84934 0.78147 0.79039 0.76730 1.18834 1.22044 1.21647 1.19512 0.91124 0.83436 1.42804 0.89696 1.44879 1.02637 1.00833 1.86967 1.21789 0.84271 0.93925 0.97022 1.22722 0.97068 0.95611 0.99662 1.22255 0.97892 0.92708 1.00062 0.86058 1.20257 0.79236 0.82573 0.84930 1.90631 1.52156 1.72799 1.30685 1.48618 1.27395 1.30200 1.29098 1.22452 0.91673 1.00972 0.88721 1.22659 0.98630 0.97954 0.96595 1.22794 0.92901 1.03984 0.96554 1.22442 0.96549 0.88028 0.95728 1.21225 0.93287 0.84095 0.98310 0.94230 0.90935 0.97970 0.93064 0.89771 0.91460 0.90075 0.88665 0.88226 0.87099 0.91094 0.90413 0.92483 0.93273 0.96846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.59 10.11 21.65 0.22 -57.37 16 2 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 3 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.24 -13.60 10.28 84.03 0.86 -12.74 16 8 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.63 -33.15 3.41 -691.17 -2.35 -35.50 16 10 C 0.15 8.00 5.91 86.79 0.51 8.51 16 11 C -0.11 -4.78 6.14 31.99 0.20 -4.59 16 12 C -0.11 -3.98 2.84 -10.35 -0.03 -4.01 16 13 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 14 C 0.54 19.52 7.08 87.66 0.62 20.14 16 15 O -0.58 -25.24 16.02 -3.02 -0.05 -25.29 16 16 N -0.62 -16.99 3.33 -811.78 -2.70 -19.69 16 17 C 0.08 1.69 6.07 86.72 0.53 2.21 16 18 C -0.12 -1.51 6.95 31.78 0.22 -1.29 16 19 C -0.12 -1.74 7.08 31.99 0.23 -1.51 16 20 C 0.09 2.06 6.91 86.86 0.60 2.66 16 21 C 0.16 6.51 5.28 86.73 0.46 6.97 16 22 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 23 H 0.07 4.29 5.88 -2.39 -0.01 4.27 16 24 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.05 2.40 7.49 -2.39 -0.02 2.38 16 26 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 27 H 0.07 1.52 6.22 -2.39 -0.01 1.50 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 30 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.46 8.04 -2.39 -0.02 1.44 16 35 H 0.05 1.84 7.23 -2.39 -0.02 1.83 16 36 H 0.01 0.59 7.81 -2.39 -0.02 0.57 16 Total: -1.00 -72.27 285.84 2.86 -69.42 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.05 Total: 7.61 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 4.66 Total: 12.96 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -4.84 Total: -112.56 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.27 2.86 -69.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336520846.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.060 kcal (2) G-P(sol) polarization free energy of solvation -72.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds