Wall clock time and date at job start Sun Mar 29 2020 22:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.29832 * 118.55258 * 2 1 4 4 C 1.50697 * 118.35806 * 0.39598 * 3 2 1 5 5 C 1.50147 * 123.28221 * 180.35542 * 3 2 1 6 6 N 1.46840 * 110.28134 * 342.98330 * 5 3 2 7 7 C 1.46903 * 111.00130 * 287.52639 * 6 5 3 8 8 C 1.50697 * 109.46692 * 292.92704 * 7 6 5 9 9 O 1.21298 * 120.00150 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.37101 * 120.00291 * 179.72346 * 10 8 7 12 12 H 1.08004 * 119.99895 * 0.28265 * 11 10 8 13 13 C 1.38946 * 120.00131 * 180.27650 * 11 10 8 14 14 N 1.31416 * 119.99745 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00113 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47036 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47102 * 120.00220 * 15 13 11 18 18 H 1.48504 * 109.46985 * 240.00225 * 15 13 11 19 19 C 1.47247 * 110.20403 * 50.91458 * 6 5 3 20 20 C 1.50312 * 118.55686 * 180.02562 * 2 1 3 21 21 H 1.09006 * 109.46814 * 275.19815 * 1 2 3 22 22 H 1.09004 * 109.47425 * 35.19483 * 1 2 3 23 23 H 1.09000 * 109.47214 * 155.20059 * 1 2 3 24 24 H 1.09000 * 109.46946 * 54.88780 * 4 3 2 25 25 H 1.09002 * 109.46814 * 174.89199 * 4 3 2 26 26 H 1.09000 * 109.46797 * 294.89180 * 4 3 2 27 27 H 1.09004 * 109.34069 * 222.72842 * 5 3 2 28 28 H 1.08996 * 109.31908 * 103.22548 * 5 3 2 29 29 H 1.08997 * 109.47058 * 172.93075 * 7 6 5 30 30 H 1.09001 * 109.47052 * 52.93001 * 7 6 5 31 31 H 0.97005 * 119.99826 * 0.02562 * 10 8 7 32 32 H 0.97003 * 119.99601 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.63829 * 50.88786 * 19 6 5 34 34 H 1.08998 * 109.63585 * 171.50006 * 19 6 5 35 35 H 1.08996 * 109.42912 * 43.41997 * 20 2 1 36 36 H 1.09004 * 109.38522 * 283.54717 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1275 1.1404 0.0000 4 6 1.3048 2.4030 0.0092 5 6 3.6238 1.2642 -0.0078 6 7 4.2418 -0.0076 0.3882 7 6 4.0641 -0.2543 1.8254 8 6 4.8524 0.7620 2.6107 9 8 5.4982 1.6089 2.0302 10 7 4.8389 0.7306 3.9581 11 6 5.5605 1.6517 4.6725 12 1 6.1362 2.4053 4.1557 13 6 5.5512 1.6157 6.0615 14 7 4.8510 0.6985 6.6903 15 14 6.5338 2.8712 7.0350 16 1 7.2298 3.7894 6.0981 17 1 5.6167 3.6524 7.9031 18 1 7.5357 2.1701 7.8776 19 6 3.6860 -1.1132 -0.4098 20 6 2.2255 -1.3203 -0.0006 21 1 -0.3633 0.0931 1.0235 22 1 -0.3634 0.8398 -0.5923 23 1 -0.3634 -0.9329 -0.4310 24 1 0.6163 2.3819 0.8540 25 1 1.9646 3.2659 0.0995 26 1 0.7384 2.4743 -0.9194 27 1 3.9251 2.0449 0.6908 28 1 3.9583 1.5315 -1.0101 29 1 4.4187 -1.2559 2.0686 30 1 3.0077 -0.1709 2.0804 31 1 4.3221 0.0535 4.4223 32 1 4.8442 0.6736 7.6600 33 1 3.7376 -0.8624 -1.4693 34 1 4.2528 -2.0243 -0.2180 35 1 1.7430 -1.9953 -0.7074 36 1 2.1869 -1.7536 0.9989 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336530779.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:15 Heat of formation + Delta-G solvation = -23.240315 kcal Electronic energy + Delta-G solvation = -17394.380088 eV Core-core repulsion = 14685.462533 eV Total energy + Delta-G solvation = -2708.917555 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86337 -37.69281 -34.61724 -33.77007 -31.66937 -31.18524 -28.77376 -27.08891 -26.17240 -24.45029 -22.96262 -21.28294 -19.17448 -17.87368 -16.62936 -16.04616 -15.35578 -14.95484 -14.75442 -14.41426 -14.14079 -13.88628 -13.55068 -13.42404 -12.48114 -12.40763 -12.27871 -12.14827 -11.79636 -11.72120 -11.55759 -11.36715 -11.18267 -11.10240 -10.74246 -10.45889 -10.31331 -10.18393 -9.45194 -8.41531 -8.30748 -7.91981 -7.76493 -6.37677 -3.78155 2.29389 3.18908 3.29016 3.36455 3.97060 4.11036 4.32479 4.82430 4.99402 5.09504 5.21705 5.28634 5.31962 5.48939 5.53138 5.60149 5.66198 5.69758 5.85726 5.90711 5.92763 5.97121 6.05994 6.09827 6.14085 6.15799 6.35859 6.41367 6.74582 7.13901 7.41451 7.45750 7.59265 8.11500 8.66911 9.22734 9.59928 10.12052 10.80375 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034027 B = 0.005900 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.668750 B = 4744.275227 C = 4828.128319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.146 4.146 3 C -0.151 4.151 4 C -0.115 4.115 5 C 0.085 3.915 6 N -0.504 5.504 7 C 0.042 3.958 8 C 0.446 3.554 9 O -0.579 6.579 10 N -0.566 5.566 11 C -0.296 4.296 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.903 5.903 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.052 3.948 20 C -0.117 4.117 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.391 0.609 32 H 0.270 0.730 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 -3.504 -11.079 14.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.147 4.147 3 C -0.152 4.152 4 C -0.172 4.172 5 C -0.043 4.043 6 N -0.225 5.225 7 C -0.090 4.090 8 C 0.232 3.768 9 O -0.463 6.463 10 N -0.203 5.203 11 C -0.426 4.426 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.545 5.545 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.077 4.077 20 C -0.155 4.155 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.224 0.776 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.517 -2.928 -11.355 13.928 hybrid contribution -0.867 -0.004 1.114 1.412 sum -8.384 -2.932 -10.241 13.556 Atomic orbital electron populations 1.20868 0.92814 1.01757 1.01688 1.20687 0.95445 0.94335 1.04213 1.21773 0.97842 0.94900 1.00701 1.20848 0.99288 0.95826 1.01219 1.21225 0.86944 0.93660 1.02433 1.62342 1.55211 1.01895 1.03069 1.21888 0.98959 0.99651 0.88483 1.19787 0.86280 0.87858 0.82875 1.90485 1.46395 1.40041 1.69375 1.41876 1.43991 1.30143 1.04282 1.19748 1.24703 1.09671 0.88478 0.87893 1.25251 0.97872 0.98056 0.96865 1.69629 1.41275 1.34203 1.09383 0.85813 0.79146 0.80095 0.79367 1.19231 1.20833 1.20774 1.22314 0.92053 0.95109 0.98220 1.21041 0.97138 0.95192 1.02164 0.91904 0.91928 0.92582 0.91913 0.91938 0.91972 0.87441 0.90274 0.89655 0.92882 0.77557 0.92005 0.90675 0.90455 0.91082 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.07 36.00 0.33 -0.94 16 2 C -0.15 -1.96 5.25 -100.93 -0.53 -2.49 16 3 C -0.15 -2.22 5.35 -101.01 -0.54 -2.76 16 4 C -0.11 -1.47 8.60 36.00 0.31 -1.16 16 5 C 0.09 1.46 5.17 -5.28 -0.03 1.43 16 6 N -0.50 -8.86 4.75 -237.55 -1.13 -9.99 16 7 C 0.04 0.79 4.52 -4.98 -0.02 0.76 16 8 C 0.45 10.84 7.39 -10.99 -0.08 10.76 16 9 O -0.58 -15.86 14.08 5.54 0.08 -15.79 16 10 N -0.57 -14.68 5.29 -10.96 -0.06 -14.74 16 11 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 12 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 13 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -24.94 13.05 55.50 0.72 -24.22 16 15 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.05 0.70 6.02 -3.59 -0.02 0.68 16 20 C -0.12 -1.45 5.22 -28.03 -0.15 -1.60 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.64 6.44 -51.93 -0.33 0.31 16 23 H 0.06 0.54 8.04 -51.93 -0.42 0.13 16 24 H 0.06 0.79 7.76 -51.93 -0.40 0.39 16 25 H 0.06 0.82 7.95 -51.93 -0.41 0.41 16 26 H 0.06 0.68 7.40 -51.93 -0.38 0.29 16 27 H 0.11 2.21 5.87 -51.93 -0.30 1.90 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 30 H 0.05 0.97 6.04 -51.93 -0.31 0.65 16 31 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 33 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.07 0.93 7.15 -51.93 -0.37 0.56 16 LS Contribution 288.52 15.07 4.35 4.35 Total: -1.00 -30.80 288.52 -7.34 -38.14 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.30 Total: 9.35 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -0.97 Total: -3.38 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.46 Total: -48.95 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.08 Total: -15.79 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.80 -7.34 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336530779.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.897 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds