Wall clock time and date at job start Sun Mar 29 2020 22:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.29832 * 118.55258 * 2 1 4 4 C 1.50697 * 118.35806 * 0.39598 * 3 2 1 5 5 C 1.50147 * 123.28221 * 180.35542 * 3 2 1 6 6 N 1.46840 * 110.28134 * 342.98330 * 5 3 2 7 7 C 1.46903 * 111.00130 * 287.52639 * 6 5 3 8 8 C 1.50697 * 109.46692 * 292.92704 * 7 6 5 9 9 O 1.21298 * 120.00150 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.37101 * 120.00291 * 179.72346 * 10 8 7 12 12 H 1.08004 * 119.99895 * 0.28265 * 11 10 8 13 13 C 1.38946 * 120.00131 * 180.27650 * 11 10 8 14 14 N 1.31416 * 119.99745 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00113 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47036 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47102 * 120.00220 * 15 13 11 18 18 H 1.48504 * 109.46985 * 240.00225 * 15 13 11 19 19 C 1.47247 * 110.20403 * 50.91458 * 6 5 3 20 20 C 1.50312 * 118.55686 * 180.02562 * 2 1 3 21 21 H 1.09006 * 109.46814 * 275.19815 * 1 2 3 22 22 H 1.09004 * 109.47425 * 35.19483 * 1 2 3 23 23 H 1.09000 * 109.47214 * 155.20059 * 1 2 3 24 24 H 1.09000 * 109.46946 * 54.88780 * 4 3 2 25 25 H 1.09002 * 109.46814 * 174.89199 * 4 3 2 26 26 H 1.09000 * 109.46797 * 294.89180 * 4 3 2 27 27 H 1.09004 * 109.34069 * 222.72842 * 5 3 2 28 28 H 1.08996 * 109.31908 * 103.22548 * 5 3 2 29 29 H 1.08997 * 109.47058 * 172.93075 * 7 6 5 30 30 H 1.09001 * 109.47052 * 52.93001 * 7 6 5 31 31 H 0.97005 * 119.99826 * 0.02562 * 10 8 7 32 32 H 0.97003 * 119.99601 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.63829 * 50.88786 * 19 6 5 34 34 H 1.08998 * 109.63585 * 171.50006 * 19 6 5 35 35 H 1.08996 * 109.42912 * 43.41997 * 20 2 1 36 36 H 1.09004 * 109.38522 * 283.54717 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1275 1.1404 0.0000 4 6 1.3048 2.4030 0.0092 5 6 3.6238 1.2642 -0.0078 6 7 4.2418 -0.0076 0.3882 7 6 4.0641 -0.2543 1.8254 8 6 4.8524 0.7620 2.6107 9 8 5.4982 1.6089 2.0302 10 7 4.8389 0.7306 3.9581 11 6 5.5605 1.6517 4.6725 12 1 6.1362 2.4053 4.1557 13 6 5.5512 1.6157 6.0615 14 7 4.8510 0.6985 6.6903 15 14 6.5338 2.8712 7.0350 16 1 7.2298 3.7894 6.0981 17 1 5.6167 3.6524 7.9031 18 1 7.5357 2.1701 7.8776 19 6 3.6860 -1.1132 -0.4098 20 6 2.2255 -1.3203 -0.0006 21 1 -0.3633 0.0931 1.0235 22 1 -0.3634 0.8398 -0.5923 23 1 -0.3634 -0.9329 -0.4310 24 1 0.6163 2.3819 0.8540 25 1 1.9646 3.2659 0.0995 26 1 0.7384 2.4743 -0.9194 27 1 3.9251 2.0449 0.6908 28 1 3.9583 1.5315 -1.0101 29 1 4.4187 -1.2559 2.0686 30 1 3.0077 -0.1709 2.0804 31 1 4.3221 0.0535 4.4223 32 1 4.8442 0.6736 7.6600 33 1 3.7376 -0.8624 -1.4693 34 1 4.2528 -2.0243 -0.2180 35 1 1.7430 -1.9953 -0.7074 36 1 2.1869 -1.7536 0.9989 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336530779.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:15 Heat of formation + Delta-G solvation = -44.703762 kcal Electronic energy + Delta-G solvation = -17395.310813 eV Core-core repulsion = 14685.462533 eV Total energy + Delta-G solvation = -2709.848280 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.19944 -39.49363 -36.11426 -35.53644 -33.27585 -32.75706 -30.15667 -28.28163 -27.45409 -26.27663 -24.11156 -22.58569 -20.98190 -19.89932 -18.13589 -17.53706 -16.69310 -16.56892 -16.19108 -15.82323 -15.67521 -15.35367 -15.07329 -14.70616 -14.03429 -13.71805 -13.51276 -13.37196 -13.28382 -12.95314 -12.80152 -12.73157 -12.68688 -12.42318 -12.33924 -12.11174 -12.06053 -11.51551 -11.45379 -10.28212 -10.00088 -9.42854 -9.13226 -8.46357 -5.95027 1.22219 1.36442 1.41217 1.55789 2.05865 2.28939 2.84524 3.20390 3.41783 3.86042 3.91740 4.09388 4.21940 4.33366 4.42834 4.46706 4.54835 4.57724 4.64037 4.72264 4.80518 4.88835 4.93079 5.00670 5.05096 5.09277 5.11170 5.17957 5.41160 5.70744 5.88861 6.02616 6.19986 6.21501 6.61069 7.13360 7.56584 8.12674 8.71547 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034027 B = 0.005900 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.668750 B = 4744.275227 C = 4828.128319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.137 4.137 3 C -0.177 4.177 4 C -0.110 4.110 5 C 0.091 3.909 6 N -0.526 5.526 7 C 0.059 3.941 8 C 0.442 3.558 9 O -0.615 6.615 10 N -0.575 5.575 11 C -0.331 4.331 12 H 0.078 0.922 13 C -0.014 4.014 14 N -0.922 5.922 15 Si 0.993 3.007 16 H -0.274 1.274 17 H -0.270 1.270 18 H -0.270 1.270 19 C 0.051 3.949 20 C -0.116 4.116 21 H 0.062 0.938 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.395 0.605 32 H 0.277 0.723 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.688 -4.687 -11.392 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.137 4.137 3 C -0.179 4.179 4 C -0.167 4.167 5 C -0.037 4.037 6 N -0.248 5.248 7 C -0.072 4.072 8 C 0.230 3.770 9 O -0.501 6.501 10 N -0.212 5.212 11 C -0.461 4.461 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.563 5.563 15 Si 0.817 3.183 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.195 1.195 19 C -0.076 4.076 20 C -0.155 4.155 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.228 0.772 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.749 -4.136 -11.674 15.164 hybrid contribution -0.494 0.326 1.145 1.289 sum -9.243 -3.810 -10.529 14.519 Atomic orbital electron populations 1.20904 0.90885 1.03241 1.01993 1.21053 0.96921 0.94172 1.01583 1.21688 0.96417 0.96356 1.03443 1.20817 0.98958 0.94630 1.02313 1.20981 0.89008 0.92480 1.01242 1.62301 1.56686 1.03332 1.02459 1.21691 0.98245 0.98380 0.88885 1.20787 0.85615 0.88069 0.82543 1.90460 1.47920 1.41733 1.70010 1.41938 1.44236 1.30091 1.04979 1.19694 1.26294 1.10643 0.89446 0.90389 1.26044 0.98436 0.99732 0.97117 1.69687 1.41591 1.35002 1.10033 0.84866 0.77970 0.77717 0.77748 1.19832 1.19566 1.19508 1.22437 0.93050 0.94062 0.98056 1.21088 0.96236 0.95174 1.02968 0.91969 0.91037 0.90678 0.91884 0.93301 0.89830 0.91843 0.89944 0.87586 0.91958 0.77164 0.91323 0.89642 0.89023 0.88181 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 9.07 71.23 0.65 -1.51 16 2 C -0.14 -3.32 5.25 -15.41 -0.08 -3.40 16 3 C -0.18 -5.07 5.35 -15.46 -0.08 -5.15 16 4 C -0.11 -2.76 8.60 71.24 0.61 -2.15 16 5 C 0.09 3.16 5.17 85.39 0.44 3.61 16 6 N -0.53 -18.18 4.75 -905.48 -4.30 -22.48 16 7 C 0.06 2.21 4.52 85.56 0.39 2.60 16 8 C 0.44 22.06 7.39 87.66 0.65 22.71 16 9 O -0.62 -35.19 14.08 -3.08 -0.04 -35.24 16 10 N -0.57 -30.59 5.29 -306.98 -1.62 -32.21 16 11 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 12 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 13 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 14 N -0.92 -50.64 13.05 21.66 0.28 -50.36 16 15 Si 0.99 43.69 29.55 68.60 2.03 45.71 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 C 0.05 1.27 6.02 86.27 0.52 1.79 16 20 C -0.12 -2.50 5.22 29.76 0.16 -2.35 16 21 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 22 H 0.07 1.24 6.44 -2.38 -0.02 1.22 16 23 H 0.07 1.15 8.04 -2.39 -0.02 1.13 16 24 H 0.06 1.54 7.76 -2.39 -0.02 1.53 16 25 H 0.05 1.32 7.95 -2.39 -0.02 1.30 16 26 H 0.08 1.68 7.40 -2.39 -0.02 1.66 16 27 H 0.06 2.76 5.87 -2.38 -0.01 2.75 16 28 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.11 3.50 8.08 -2.39 -0.02 3.48 16 30 H 0.06 2.21 6.04 -2.39 -0.01 2.20 16 31 H 0.39 20.02 7.90 -92.70 -0.73 19.28 16 32 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.09 1.94 8.08 -2.39 -0.02 1.92 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.10 1.63 8.12 -2.39 -0.02 1.61 16 36 H 0.07 1.63 7.15 -2.38 -0.02 1.61 16 Total: -1.00 -67.36 288.52 1.21 -66.15 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.35 Total: 31.05 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 4.53 Total: -2.62 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -5.64 Total: -105.05 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.04 Total: -35.24 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.36 1.21 -66.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336530779.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.444 kcal (2) G-P(sol) polarization free energy of solvation -67.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds