Wall clock time and date at job start Sun Mar 29 2020 21:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48499 * 109.47120 * 272.04272 * 3 2 1 5 5 H 1.48503 * 109.47126 * 32.04900 * 3 2 1 6 6 H 1.48498 * 109.46953 * 152.04519 * 3 2 1 7 7 C 1.38809 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99924 * 336.86032 * 7 2 1 9 9 N 1.36929 * 120.00054 * 156.86402 * 7 2 1 10 10 C 1.46502 * 120.00255 * 320.85005 * 9 7 2 11 11 C 1.52995 * 109.47261 * 270.00009 * 10 9 7 12 12 N 1.46496 * 109.47497 * 179.97438 * 11 10 9 13 13 C 1.46772 * 124.34901 * 269.72928 * 12 11 10 14 14 C 1.54657 * 105.38199 * 162.84891 * 13 12 11 15 15 C 1.54634 * 101.68466 * 25.76618 * 14 13 12 16 16 C 1.34414 * 124.35155 * 90.01982 * 12 11 10 17 17 O 1.21280 * 124.94383 * 0.43675 * 16 12 11 18 18 C 1.46499 * 120.00222 * 140.84792 * 9 7 2 19 19 C 1.53005 * 117.49565 * 3.98747 * 18 9 7 20 20 C 1.52999 * 117.49991 * 295.36744 * 18 9 7 21 21 H 0.97000 * 120.00510 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46506 * 29.99967 * 10 9 7 23 23 H 1.09000 * 109.47586 * 149.99460 * 10 9 7 24 24 H 1.08998 * 109.47143 * 300.00155 * 11 10 9 25 25 H 1.09004 * 109.47361 * 59.99761 * 11 10 9 26 26 H 1.08999 * 110.24165 * 281.98133 * 13 12 11 27 27 H 1.09003 * 110.24408 * 43.97684 * 13 12 11 28 28 H 1.08994 * 111.19493 * 267.59440 * 14 13 12 29 29 H 1.08999 * 110.81985 * 143.77520 * 14 13 12 30 30 H 1.08996 * 110.48116 * 216.30564 * 15 14 13 31 31 H 1.08999 * 110.59590 * 93.71834 * 15 14 13 32 32 H 1.08999 * 115.55485 * 149.69386 * 18 9 7 33 33 H 1.08994 * 117.49961 * 359.97438 * 19 18 9 34 34 H 1.09007 * 117.49868 * 145.02328 * 19 18 9 35 35 H 1.09002 * 117.49915 * 214.98110 * 20 18 9 36 36 H 1.09004 * 117.49881 * 359.96937 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4544 2.0714 -1.3992 5 1 1.4698 2.6398 0.7430 6 1 3.5686 1.4281 0.6563 7 6 2.0103 -1.2021 -0.0005 8 1 1.5355 -2.1000 0.3666 9 7 3.2970 -1.2496 -0.4665 10 6 3.6785 -0.4678 -1.6453 11 6 3.4625 -1.3074 -2.9059 12 7 3.8434 -0.5255 -4.0847 13 6 2.9246 0.3335 -4.8410 14 6 3.8305 1.2645 -5.6803 15 6 5.1141 0.4130 -5.8164 16 6 5.0779 -0.5070 -4.6160 17 8 6.0251 -1.1365 -4.1947 18 6 4.2922 -2.0821 0.2138 19 6 3.8112 -2.9463 1.3812 20 6 4.6659 -1.7058 1.6489 21 1 -0.4851 0.8400 -0.0004 22 1 3.0655 0.4319 -1.6984 23 1 4.7293 -0.1876 -1.5710 24 1 4.0754 -2.2072 -2.8526 25 1 2.4117 -1.5876 -2.9802 26 1 2.2933 -0.2709 -5.4925 27 1 2.3103 0.9214 -4.1589 28 1 4.0346 2.1961 -5.1528 29 1 3.3867 1.4598 -6.6565 30 1 5.9988 1.0487 -5.7834 31 1 5.0948 -0.1647 -6.7405 32 1 5.0798 -2.4871 -0.4216 33 1 2.7544 -2.8951 1.6433 34 1 4.2823 -3.9203 1.5139 35 1 5.6992 -1.8637 1.9578 36 1 4.1716 -0.8386 2.0868 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336642591.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:41 Heat of formation + Delta-G solvation = 19.110581 kcal Electronic energy + Delta-G solvation = -17560.590445 eV Core-core repulsion = 14853.509362 eV Total energy + Delta-G solvation = -2707.081083 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06789 -37.28373 -36.11557 -34.11588 -32.50159 -31.01468 -27.57233 -27.38149 -24.31909 -22.72550 -21.73564 -21.40196 -19.64997 -19.03960 -16.80329 -16.35580 -16.18642 -15.55282 -15.13906 -14.89293 -13.77349 -13.62126 -13.43933 -13.36034 -12.85478 -12.56292 -12.48228 -12.20536 -11.83360 -11.50125 -11.32198 -11.03468 -10.89343 -10.72907 -10.41176 -10.02661 -9.84810 -9.51465 -9.50007 -9.40994 -8.59101 -8.40609 -6.75503 -6.10774 -3.52983 2.83356 3.20711 3.33343 3.39801 3.49001 4.43142 4.47183 4.53720 4.79435 4.84400 4.92882 5.13012 5.20549 5.51149 5.58858 5.66556 5.75998 5.81435 5.83600 5.93316 5.99787 6.05289 6.19577 6.22870 6.44055 6.44992 6.50343 6.67407 6.89580 6.99292 7.12292 7.48923 7.96714 8.32890 8.45035 8.90792 9.61018 10.02997 11.03806 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021851 B = 0.009295 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.071288 B = 3011.631820 C = 3776.405706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.042 3.958 3 Si 0.872 3.128 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.267 1.267 7 C -0.272 4.272 8 H 0.084 0.916 9 N -0.571 5.571 10 C 0.128 3.872 11 C 0.107 3.893 12 N -0.611 5.611 13 C 0.098 3.902 14 C -0.132 4.132 15 C -0.155 4.155 16 C 0.510 3.490 17 O -0.541 6.541 18 C 0.118 3.882 19 C -0.187 4.187 20 C -0.223 4.223 21 H 0.264 0.736 22 H 0.060 0.940 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.191 1.854 -9.955 11.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.160 4.160 3 Si 0.702 3.298 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.192 1.192 7 C -0.400 4.400 8 H 0.102 0.898 9 N -0.290 5.290 10 C 0.001 3.999 11 C -0.016 4.016 12 N -0.345 5.345 13 C -0.026 4.026 14 C -0.170 4.170 15 C -0.195 4.195 16 C 0.297 3.703 17 O -0.419 6.419 18 C 0.009 3.991 19 C -0.225 4.225 20 C -0.264 4.264 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.455 1.574 -9.654 11.719 hybrid contribution 0.249 1.080 0.152 1.119 sum 6.704 2.654 -9.502 11.928 Atomic orbital electron populations 1.69872 1.05944 1.26876 1.50657 1.25506 0.95042 0.97666 0.97746 0.87057 0.80865 0.84697 0.77185 1.21295 1.22794 1.19204 1.18759 0.86258 0.94581 1.40391 0.89813 1.43608 1.07179 1.52159 1.26043 1.21507 0.98221 0.94419 0.85740 1.22280 1.01577 0.94532 0.83196 1.48461 1.10394 1.46429 1.29241 1.22152 0.92803 0.92627 0.95009 1.22631 0.95009 0.98370 1.01017 1.22325 1.00086 0.98813 0.98326 1.20874 0.82586 0.82204 0.84653 1.90694 1.38189 1.46754 1.66244 1.21219 0.94003 0.97163 0.86670 1.23062 1.01041 0.93490 1.04925 1.23357 0.98421 0.99555 1.05039 0.92572 0.92257 0.93865 0.90738 0.89607 0.91009 0.90025 0.90095 0.89386 0.88477 0.88193 0.88871 0.87893 0.90415 0.90757 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.97 55.49 0.78 -25.35 16 2 C 0.04 1.16 5.28 -17.43 -0.09 1.07 16 3 Si 0.87 21.77 25.31 -169.99 -4.30 17.47 16 4 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.27 -7.31 8.93 -15.06 -0.13 -7.44 16 8 H 0.08 2.43 6.86 -52.49 -0.36 2.07 16 9 N -0.57 -13.53 2.38 -165.66 -0.39 -13.93 16 10 C 0.13 2.81 4.88 -4.04 -0.02 2.79 16 11 C 0.11 2.08 6.26 -4.05 -0.03 2.06 16 12 N -0.61 -10.22 2.93 -172.30 -0.51 -10.72 16 13 C 0.10 1.27 7.36 -3.02 -0.02 1.24 16 14 C -0.13 -1.31 7.19 -25.00 -0.18 -1.49 16 15 C -0.16 -1.75 6.86 -26.74 -0.18 -1.93 16 16 C 0.51 8.51 8.02 -10.86 -0.09 8.42 16 17 O -0.54 -11.14 17.59 5.56 0.10 -11.04 16 18 C 0.12 2.49 6.57 -67.93 -0.45 2.04 16 19 C -0.19 -3.67 9.80 -26.73 -0.26 -3.93 16 20 C -0.22 -4.46 10.35 -26.73 -0.28 -4.73 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.06 1.39 3.45 -51.93 -0.18 1.21 16 23 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 24 H 0.07 1.48 7.92 -51.93 -0.41 1.07 16 25 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 33 H 0.10 2.23 6.44 -51.93 -0.33 1.90 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 295.02 15.07 4.45 4.45 Total: -1.00 -31.34 295.02 -7.14 -38.47 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.52 Total: 2.54 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.73 Total: -1.90 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.12 Total: -49.99 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.10 Total: -11.04 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.30 Total: 17.47 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.34 -7.14 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336642591.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.584 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds