Wall clock time and date at job start Sun Mar 29 2020 21:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48499 * 109.47120 * 272.04272 * 3 2 1 5 5 H 1.48503 * 109.47126 * 32.04900 * 3 2 1 6 6 H 1.48498 * 109.46953 * 152.04519 * 3 2 1 7 7 C 1.38809 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99924 * 336.86032 * 7 2 1 9 9 N 1.36929 * 120.00054 * 156.86402 * 7 2 1 10 10 C 1.46502 * 120.00255 * 320.85005 * 9 7 2 11 11 C 1.52995 * 109.47261 * 270.00009 * 10 9 7 12 12 N 1.46496 * 109.47497 * 179.97438 * 11 10 9 13 13 C 1.46772 * 124.34901 * 269.72928 * 12 11 10 14 14 C 1.54657 * 105.38199 * 162.84891 * 13 12 11 15 15 C 1.54634 * 101.68466 * 25.76618 * 14 13 12 16 16 C 1.34414 * 124.35155 * 90.01982 * 12 11 10 17 17 O 1.21280 * 124.94383 * 0.43675 * 16 12 11 18 18 C 1.46499 * 120.00222 * 140.84792 * 9 7 2 19 19 C 1.53005 * 117.49565 * 3.98747 * 18 9 7 20 20 C 1.52999 * 117.49991 * 295.36744 * 18 9 7 21 21 H 0.97000 * 120.00510 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46506 * 29.99967 * 10 9 7 23 23 H 1.09000 * 109.47586 * 149.99460 * 10 9 7 24 24 H 1.08998 * 109.47143 * 300.00155 * 11 10 9 25 25 H 1.09004 * 109.47361 * 59.99761 * 11 10 9 26 26 H 1.08999 * 110.24165 * 281.98133 * 13 12 11 27 27 H 1.09003 * 110.24408 * 43.97684 * 13 12 11 28 28 H 1.08994 * 111.19493 * 267.59440 * 14 13 12 29 29 H 1.08999 * 110.81985 * 143.77520 * 14 13 12 30 30 H 1.08996 * 110.48116 * 216.30564 * 15 14 13 31 31 H 1.08999 * 110.59590 * 93.71834 * 15 14 13 32 32 H 1.08999 * 115.55485 * 149.69386 * 18 9 7 33 33 H 1.08994 * 117.49961 * 359.97438 * 19 18 9 34 34 H 1.09007 * 117.49868 * 145.02328 * 19 18 9 35 35 H 1.09002 * 117.49915 * 214.98110 * 20 18 9 36 36 H 1.09004 * 117.49881 * 359.96937 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4544 2.0714 -1.3992 5 1 1.4698 2.6398 0.7430 6 1 3.5686 1.4281 0.6563 7 6 2.0103 -1.2021 -0.0005 8 1 1.5355 -2.1000 0.3666 9 7 3.2970 -1.2496 -0.4665 10 6 3.6785 -0.4678 -1.6453 11 6 3.4625 -1.3074 -2.9059 12 7 3.8434 -0.5255 -4.0847 13 6 2.9246 0.3335 -4.8410 14 6 3.8305 1.2645 -5.6803 15 6 5.1141 0.4130 -5.8164 16 6 5.0779 -0.5070 -4.6160 17 8 6.0251 -1.1365 -4.1947 18 6 4.2922 -2.0821 0.2138 19 6 3.8112 -2.9463 1.3812 20 6 4.6659 -1.7058 1.6489 21 1 -0.4851 0.8400 -0.0004 22 1 3.0655 0.4319 -1.6984 23 1 4.7293 -0.1876 -1.5710 24 1 4.0754 -2.2072 -2.8526 25 1 2.4117 -1.5876 -2.9802 26 1 2.2933 -0.2709 -5.4925 27 1 2.3103 0.9214 -4.1589 28 1 4.0346 2.1961 -5.1528 29 1 3.3867 1.4598 -6.6565 30 1 5.9988 1.0487 -5.7834 31 1 5.0948 -0.1647 -6.7405 32 1 5.0798 -2.4871 -0.4216 33 1 2.7544 -2.8951 1.6433 34 1 4.2823 -3.9203 1.5139 35 1 5.6992 -1.8637 1.9578 36 1 4.1716 -0.8386 2.0868 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336642591.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:41 Heat of formation + Delta-G solvation = -0.789456 kcal Electronic energy + Delta-G solvation = -17561.453375 eV Core-core repulsion = 14853.509362 eV Total energy + Delta-G solvation = -2707.944013 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31047 -39.04060 -37.43554 -35.74642 -34.24011 -32.70693 -29.18045 -28.44331 -26.24588 -24.34331 -23.04418 -22.69922 -21.50147 -20.34930 -18.58448 -17.85851 -17.42157 -17.34107 -16.80850 -16.26268 -15.55268 -15.03361 -14.80958 -14.72311 -14.36380 -14.26825 -13.93502 -13.72467 -13.22510 -13.11687 -12.79302 -12.62481 -12.31752 -12.16163 -11.91123 -11.83482 -11.67290 -11.38899 -11.07061 -10.81443 -10.64773 -9.80021 -8.67352 -8.26446 -5.65674 1.20162 1.34659 1.46149 1.56755 2.04035 2.34463 2.96257 3.17978 3.28105 3.44904 3.64072 4.00532 4.05486 4.20597 4.23418 4.27712 4.35989 4.46638 4.50386 4.66681 4.69210 4.76712 4.88366 4.88985 4.94916 5.00316 5.07283 5.20965 5.23973 5.48298 5.55398 5.89976 6.15989 6.24009 6.90729 7.15551 7.54407 7.98686 8.92153 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021851 B = 0.009295 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.071288 B = 3011.631820 C = 3776.405706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.927 3.073 4 H -0.266 1.266 5 H -0.304 1.304 6 H -0.274 1.274 7 C -0.257 4.257 8 H 0.053 0.947 9 N -0.583 5.583 10 C 0.132 3.868 11 C 0.121 3.879 12 N -0.619 5.619 13 C 0.087 3.913 14 C -0.117 4.117 15 C -0.142 4.142 16 C 0.496 3.504 17 O -0.589 6.589 18 C 0.096 3.904 19 C -0.177 4.177 20 C -0.213 4.213 21 H 0.265 0.735 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.668 2.685 -11.723 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.233 1.233 6 H -0.200 1.200 7 C -0.387 4.387 8 H 0.071 0.929 9 N -0.303 5.303 10 C 0.006 3.994 11 C -0.003 4.003 12 N -0.352 5.352 13 C -0.035 4.035 14 C -0.155 4.155 15 C -0.182 4.182 16 C 0.286 3.714 17 O -0.470 6.470 18 C -0.011 4.011 19 C -0.215 4.215 20 C -0.254 4.254 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.145 0.855 30 H 0.130 0.870 31 H 0.145 0.855 32 H 0.130 0.870 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.941 2.422 -11.454 14.146 hybrid contribution -0.199 0.719 0.721 1.038 sum 7.742 3.141 -10.732 13.601 Atomic orbital electron populations 1.69962 1.07229 1.27531 1.53037 1.25952 0.95496 1.00281 0.98385 0.86161 0.78985 0.81325 0.77956 1.19229 1.23263 1.19957 1.18583 0.87498 0.93461 1.39132 0.92922 1.43679 1.06710 1.52744 1.27204 1.21445 0.97546 0.94105 0.86300 1.21809 1.00598 0.94187 0.83743 1.48603 1.11595 1.46504 1.28541 1.22450 0.93039 0.92948 0.95044 1.22681 0.93377 0.97147 1.02285 1.22363 1.01430 0.98060 0.96319 1.21919 0.81566 0.82144 0.85778 1.90658 1.39583 1.48817 1.67948 1.21489 0.94362 0.97793 0.87479 1.23045 0.99798 0.95139 1.03478 1.23335 1.00014 0.98645 1.03395 0.92526 0.93635 0.93956 0.91566 0.90801 0.89041 0.91598 0.89881 0.85462 0.86997 0.85518 0.86993 0.90662 0.86845 0.87359 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.06 13.97 21.65 0.30 -55.76 16 2 C 0.00 -0.18 5.28 84.86 0.45 0.27 16 3 Si 0.93 45.51 25.31 68.60 1.74 47.25 16 4 H -0.27 -12.07 6.52 99.48 0.65 -11.42 16 5 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 6 H -0.27 -13.67 7.11 99.48 0.71 -12.97 16 7 C -0.26 -14.22 8.93 84.03 0.75 -13.47 16 8 H 0.05 3.21 6.86 -2.91 -0.02 3.19 16 9 N -0.58 -27.89 2.38 -678.04 -1.61 -29.50 16 10 C 0.13 5.81 4.88 86.38 0.42 6.23 16 11 C 0.12 4.72 6.26 86.38 0.54 5.26 16 12 N -0.62 -19.98 2.93 -817.64 -2.40 -22.38 16 13 C 0.09 2.07 7.36 86.89 0.64 2.70 16 14 C -0.12 -1.83 7.19 31.72 0.23 -1.60 16 15 C -0.14 -2.66 6.86 30.59 0.21 -2.45 16 16 C 0.50 15.76 8.02 87.90 0.70 16.47 16 17 O -0.59 -23.92 17.59 -3.03 -0.05 -23.97 16 18 C 0.10 3.98 6.57 44.99 0.30 4.28 16 19 C -0.18 -6.77 9.80 30.60 0.30 -6.47 16 20 C -0.21 -8.24 10.35 30.59 0.32 -7.93 16 21 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 22 H 0.05 2.12 3.45 -2.39 -0.01 2.11 16 23 H 0.04 1.85 8.07 -2.39 -0.02 1.83 16 24 H 0.07 2.66 7.92 -2.39 -0.02 2.64 16 25 H 0.07 3.01 8.14 -2.39 -0.02 3.00 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 33 H 0.07 3.33 6.44 -2.39 -0.02 3.31 16 34 H 0.11 3.52 8.14 -2.38 -0.02 3.50 16 35 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 36 H 0.06 2.74 8.14 -2.38 -0.02 2.72 16 Total: -1.00 -69.97 295.02 3.83 -66.14 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.00 Total: 14.92 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 4.85 Total: 3.30 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -3.71 Total: -107.63 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.74 Total: 47.25 kcal Total: -69.97 3.83 -66.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336642591.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.353 kcal (2) G-P(sol) polarization free energy of solvation -69.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds