Wall clock time and date at job start Sun Mar 29 2020 22:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 113.00083 * 2 1 4 4 N 1.46898 * 109.47183 * 303.90672 * 3 2 1 5 5 C 1.46906 * 111.00112 * 85.19231 * 4 3 2 6 6 C 1.50698 * 109.47371 * 196.69080 * 5 4 3 7 7 H 1.07995 * 120.00205 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99964 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00253 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00173 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47102 * 60.00217 * 10 8 6 12 12 H 1.48497 * 109.47739 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47026 * 300.00398 * 10 8 6 14 14 C 1.46899 * 111.00253 * 209.14393 * 4 3 2 15 15 C 1.52997 * 109.47072 * 76.11230 * 14 4 3 16 16 C 1.47195 * 109.47505 * 184.51822 * 15 14 4 17 17 N 6.55496 * 127.49318 * 324.48964 * 2 1 3 18 18 C 1.54043 * 113.81617 * 228.01764 * 2 1 3 19 19 O 1.44182 * 85.51560 * 268.35070 * 18 2 1 20 20 C 1.44182 * 93.34083 * 335.80616 * 19 18 2 21 21 H 1.08994 * 109.47063 * 301.06761 * 1 2 3 22 22 H 1.08997 * 109.47176 * 61.07259 * 1 2 3 23 23 H 1.08999 * 109.46851 * 181.06608 * 1 2 3 24 24 H 1.09001 * 109.46954 * 63.90623 * 3 2 1 25 25 H 1.08997 * 109.47767 * 183.90643 * 3 2 1 26 26 H 1.09004 * 109.47007 * 316.69581 * 5 4 3 27 27 H 1.09006 * 109.46983 * 76.68784 * 5 4 3 28 28 H 0.96996 * 119.99975 * 179.97438 * 9 8 6 29 29 H 1.09000 * 109.47510 * 196.11154 * 14 4 3 30 30 H 1.09001 * 109.47309 * 316.11371 * 14 4 3 31 31 H 1.09005 * 109.47172 * 304.52477 * 15 14 4 32 32 H 1.09004 * 109.47504 * 64.51433 * 15 14 4 33 33 H 1.08997 * 113.86697 * 22.49565 * 18 2 1 34 34 H 1.09003 * 113.86468 * 154.20818 * 18 2 1 35 35 H 1.08991 * 113.86455 * 270.04552 * 20 19 18 36 36 H 1.09003 * 113.98143 * 138.34964 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4083 0.0000 4 7 1.6080 2.1609 -1.1494 5 6 0.3156 2.7825 -0.8308 6 6 -0.3759 3.1864 -2.1074 7 1 0.0971 2.9998 -3.0602 8 6 -1.6129 3.7934 -2.0591 9 7 -2.1892 4.0203 -0.8988 10 14 -2.4704 4.2935 -3.6414 11 1 -2.6932 3.0917 -4.4848 12 1 -3.7767 4.9219 -3.3194 13 1 -1.6226 5.2650 -4.3782 14 6 2.5782 3.1666 -1.6026 15 6 3.7004 2.4777 -2.3817 16 6 4.7273 3.4687 -2.7425 17 7 5.5198 4.2336 -3.0209 18 6 2.1521 -0.9427 -1.0476 19 8 2.1444 -1.9305 0.0026 20 6 2.1521 -0.9398 1.0500 21 1 -0.3633 0.5303 0.8802 22 1 -0.3633 0.4971 -0.8994 23 1 -0.3633 -1.0275 0.0191 24 1 1.8537 1.9194 0.9229 25 1 3.2135 1.3423 -0.0700 26 1 -0.3070 2.0695 -0.2902 27 1 0.4794 3.6644 -0.2115 28 1 -3.0593 4.4477 -0.8649 29 1 2.0783 3.8889 -2.2479 30 1 2.9986 3.6812 -0.7386 31 1 4.1478 1.6997 -1.7630 32 1 3.2923 2.0309 -3.2883 33 1 1.4876 -1.1778 -1.8790 34 1 3.1512 -0.6477 -1.3682 35 1 3.1512 -0.6439 1.3698 36 1 1.4884 -1.1708 1.8833 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336647422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:52 Heat of formation + Delta-G solvation = 16.927150 kcal Electronic energy + Delta-G solvation = -17345.303040 eV Core-core repulsion = 14638.127276 eV Total energy + Delta-G solvation = -2707.175763 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42559 -37.42651 -36.12438 -32.76826 -32.33590 -30.26338 -27.76374 -26.30628 -25.76647 -24.48520 -22.90254 -20.38199 -18.51704 -17.33863 -16.36913 -15.81848 -15.75559 -15.62918 -14.74771 -14.61305 -14.43393 -13.69897 -13.26831 -13.09704 -12.73962 -12.55107 -12.21657 -12.03267 -11.96424 -11.54468 -11.42871 -11.12487 -11.00388 -10.75383 -10.62026 -10.37278 -10.12183 -9.99299 -9.80319 -9.43763 -9.09862 -8.45577 -7.44035 -6.08637 -4.09998 2.91742 2.95863 3.29852 3.35023 3.37172 3.97741 4.10590 4.38049 4.50166 5.00010 5.17482 5.27098 5.30521 5.39666 5.46480 5.49587 5.62422 5.71634 5.73705 5.89294 6.04710 6.19219 6.26831 6.32387 6.35250 6.45260 6.49395 6.52074 6.94575 7.14358 7.26831 7.70975 7.75019 7.98017 8.06467 8.42410 8.97526 9.54681 11.01578 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.009105 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.022051 B = 3074.346623 C = 4495.157306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.107 4.107 3 C 0.057 3.943 4 N -0.529 5.529 5 C 0.178 3.822 6 C -0.508 4.508 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.894 3.106 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.066 3.934 15 C -0.027 4.027 16 C 0.217 3.783 17 N -0.456 5.456 18 C 0.053 3.947 19 O -0.389 6.389 20 C 0.036 3.964 21 H 0.056 0.944 22 H 0.096 0.904 23 H 0.047 0.953 24 H 0.037 0.963 25 H 0.061 0.939 26 H 0.055 0.945 27 H -0.010 1.010 28 H 0.262 0.738 29 H 0.093 0.907 30 H 0.029 0.971 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.202 -7.637 2.122 10.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 C -0.072 4.072 4 N -0.253 5.253 5 C 0.054 3.946 6 C -0.547 4.547 7 H 0.082 0.918 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.722 3.278 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.064 4.064 15 C -0.067 4.067 16 C -0.100 4.100 17 N -0.134 5.134 18 C -0.024 4.024 19 O -0.308 6.308 20 C -0.042 4.042 21 H 0.075 0.925 22 H 0.115 0.885 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.008 0.992 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.047 0.953 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.126 -7.022 1.403 10.831 hybrid contribution -0.731 0.856 0.023 1.126 sum 7.394 -6.166 1.426 9.733 Atomic orbital electron populations 1.21777 0.91574 1.01028 1.04423 1.23496 0.98157 0.94836 0.94280 1.22159 0.97631 0.93628 0.93808 1.61984 1.04344 1.26270 1.32725 1.20174 0.83946 0.93550 0.96957 1.21103 1.02435 1.38192 0.92973 0.91845 1.24957 0.97383 0.95989 0.96109 1.69932 1.16555 1.43214 1.23979 0.86622 0.78708 0.78835 0.83614 1.20132 1.21461 1.20376 1.21892 0.91888 0.94463 0.98198 1.19439 0.90664 0.93223 1.03395 1.29417 0.93808 0.94102 0.92692 1.81172 1.11788 1.10544 1.09874 1.23964 0.99991 0.86072 0.92355 1.89606 1.95726 1.28096 1.17362 1.24076 0.99942 0.87451 0.92710 0.92484 0.88507 0.93417 0.94472 0.92064 0.92729 0.99232 0.92850 0.88817 0.95307 0.88194 0.86668 0.89050 0.90674 0.90811 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 7.43 37.16 0.28 -1.83 16 2 C -0.11 -1.49 1.16 -153.42 -0.18 -1.67 16 3 C 0.06 0.81 4.42 -3.83 -0.02 0.80 16 4 N -0.53 -9.07 4.11 -236.07 -0.97 -10.04 16 5 C 0.18 3.98 3.72 -4.97 -0.02 3.96 16 6 C -0.51 -12.75 8.37 -34.44 -0.29 -13.04 16 7 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 8 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 9 N -0.90 -24.98 13.29 55.43 0.74 -24.24 16 10 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.07 1.02 4.69 -3.83 -0.02 1.00 16 15 C -0.03 -0.31 5.85 -29.52 -0.17 -0.48 16 16 C 0.22 3.02 15.43 -20.76 -0.32 2.70 16 17 N -0.46 -7.52 18.54 42.15 0.78 -6.74 16 18 C 0.05 0.69 8.36 37.61 0.31 1.01 16 19 O -0.39 -5.70 12.37 -35.23 -0.44 -6.13 16 20 C 0.04 0.44 8.36 37.61 0.31 0.76 16 21 H 0.06 0.94 7.63 -51.93 -0.40 0.54 16 22 H 0.10 1.84 6.17 -51.93 -0.32 1.52 16 23 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 24 H 0.04 0.57 7.86 -51.93 -0.41 0.16 16 25 H 0.06 0.73 6.43 -51.93 -0.33 0.39 16 26 H 0.05 1.27 4.36 -51.93 -0.23 1.04 16 27 H -0.01 -0.25 8.04 -51.93 -0.42 -0.67 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.09 1.68 7.10 -51.93 -0.37 1.31 16 30 H 0.03 0.44 7.99 -51.93 -0.42 0.03 16 31 H 0.10 0.95 6.78 -51.93 -0.35 0.60 16 32 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.09 1.23 8.10 -51.93 -0.42 0.80 16 34 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 299.44 15.07 4.51 4.51 Total: -1.00 -28.64 299.44 -5.91 -34.54 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.30 Total: -2.04 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.21 Total: -5.39 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.55 Total: -41.02 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.44 Total: -6.13 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.64 -5.91 -34.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336647422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.469 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds