Wall clock time and date at job start Sun Mar 29 2020 22:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 113.00083 * 2 1 4 4 N 1.46898 * 109.47183 * 303.90672 * 3 2 1 5 5 C 1.46906 * 111.00112 * 85.19231 * 4 3 2 6 6 C 1.50698 * 109.47371 * 196.69080 * 5 4 3 7 7 H 1.07995 * 120.00205 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99964 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00253 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00173 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47102 * 60.00217 * 10 8 6 12 12 H 1.48497 * 109.47739 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47026 * 300.00398 * 10 8 6 14 14 C 1.46899 * 111.00253 * 209.14393 * 4 3 2 15 15 C 1.52997 * 109.47072 * 76.11230 * 14 4 3 16 16 C 1.47195 * 109.47505 * 184.51822 * 15 14 4 17 17 N 6.55496 * 127.49318 * 324.48964 * 2 1 3 18 18 C 1.54043 * 113.81617 * 228.01764 * 2 1 3 19 19 O 1.44182 * 85.51560 * 268.35070 * 18 2 1 20 20 C 1.44182 * 93.34083 * 335.80616 * 19 18 2 21 21 H 1.08994 * 109.47063 * 301.06761 * 1 2 3 22 22 H 1.08997 * 109.47176 * 61.07259 * 1 2 3 23 23 H 1.08999 * 109.46851 * 181.06608 * 1 2 3 24 24 H 1.09001 * 109.46954 * 63.90623 * 3 2 1 25 25 H 1.08997 * 109.47767 * 183.90643 * 3 2 1 26 26 H 1.09004 * 109.47007 * 316.69581 * 5 4 3 27 27 H 1.09006 * 109.46983 * 76.68784 * 5 4 3 28 28 H 0.96996 * 119.99975 * 179.97438 * 9 8 6 29 29 H 1.09000 * 109.47510 * 196.11154 * 14 4 3 30 30 H 1.09001 * 109.47309 * 316.11371 * 14 4 3 31 31 H 1.09005 * 109.47172 * 304.52477 * 15 14 4 32 32 H 1.09004 * 109.47504 * 64.51433 * 15 14 4 33 33 H 1.08997 * 113.86697 * 22.49565 * 18 2 1 34 34 H 1.09003 * 113.86468 * 154.20818 * 18 2 1 35 35 H 1.08991 * 113.86455 * 270.04552 * 20 19 18 36 36 H 1.09003 * 113.98143 * 138.34964 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4083 0.0000 4 7 1.6080 2.1609 -1.1494 5 6 0.3156 2.7825 -0.8308 6 6 -0.3759 3.1864 -2.1074 7 1 0.0971 2.9998 -3.0602 8 6 -1.6129 3.7934 -2.0591 9 7 -2.1892 4.0203 -0.8988 10 14 -2.4704 4.2935 -3.6414 11 1 -2.6932 3.0917 -4.4848 12 1 -3.7767 4.9219 -3.3194 13 1 -1.6226 5.2650 -4.3782 14 6 2.5782 3.1666 -1.6026 15 6 3.7004 2.4777 -2.3817 16 6 4.7273 3.4687 -2.7425 17 7 5.5198 4.2336 -3.0209 18 6 2.1521 -0.9427 -1.0476 19 8 2.1444 -1.9305 0.0026 20 6 2.1521 -0.9398 1.0500 21 1 -0.3633 0.5303 0.8802 22 1 -0.3633 0.4971 -0.8994 23 1 -0.3633 -1.0275 0.0191 24 1 1.8537 1.9194 0.9229 25 1 3.2135 1.3423 -0.0700 26 1 -0.3070 2.0695 -0.2902 27 1 0.4794 3.6644 -0.2115 28 1 -3.0593 4.4477 -0.8649 29 1 2.0783 3.8889 -2.2479 30 1 2.9986 3.6812 -0.7386 31 1 4.1478 1.6997 -1.7630 32 1 3.2923 2.0309 -3.2883 33 1 1.4876 -1.1778 -1.8790 34 1 3.1512 -0.6477 -1.3682 35 1 3.1512 -0.6439 1.3698 36 1 1.4884 -1.1708 1.8833 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336647422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:52 Heat of formation + Delta-G solvation = -2.036277 kcal Electronic energy + Delta-G solvation = -17346.125356 eV Core-core repulsion = 14638.127276 eV Total energy + Delta-G solvation = -2707.998079 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.50408 -38.71719 -37.37700 -34.68838 -33.50096 -31.60713 -29.33051 -27.32820 -27.18651 -25.65982 -24.54682 -21.82515 -19.61637 -18.60550 -18.13741 -17.03645 -16.87643 -16.70143 -16.42141 -15.86849 -15.63937 -15.10169 -14.60313 -14.33982 -14.07337 -13.99881 -13.64595 -13.40360 -13.21842 -12.85264 -12.75242 -12.69602 -12.55511 -12.21660 -12.04479 -11.89914 -11.46854 -11.34898 -11.21044 -10.87169 -10.46984 -10.32972 -8.90995 -8.10507 -6.16794 1.46549 1.46838 1.53941 1.79056 1.86844 2.46026 2.92004 3.00986 3.23689 3.39600 3.84311 4.00926 4.19708 4.31263 4.37250 4.48892 4.58473 4.67583 4.70812 4.84603 4.88762 5.06791 5.08483 5.13871 5.19407 5.21869 5.38844 5.41819 5.43704 5.46024 5.64569 5.77979 6.20710 6.43702 6.63770 6.74729 7.00505 7.51765 8.99237 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.009105 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.022051 B = 3074.346623 C = 4495.157306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 C 0.057 3.943 4 N -0.525 5.525 5 C 0.192 3.808 6 C -0.509 4.509 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.953 3.047 11 H -0.268 1.268 12 H -0.292 1.292 13 H -0.274 1.274 14 C 0.065 3.935 15 C -0.011 4.011 16 C 0.242 3.758 17 N -0.503 5.503 18 C 0.057 3.943 19 O -0.410 6.410 20 C 0.044 3.956 21 H 0.042 0.958 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.024 0.976 25 H 0.100 0.900 26 H 0.044 0.956 27 H -0.046 1.046 28 H 0.260 0.740 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.869 -8.964 1.571 12.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.114 4.114 3 C -0.071 4.071 4 N -0.248 5.248 5 C 0.066 3.934 6 C -0.548 4.548 7 H 0.085 0.915 8 C -0.194 4.194 9 N -0.576 5.576 10 Si 0.779 3.221 11 H -0.193 1.193 12 H -0.218 1.218 13 H -0.199 1.199 14 C -0.065 4.065 15 C -0.051 4.051 16 C -0.075 4.075 17 N -0.181 5.181 18 C -0.019 4.019 19 O -0.329 6.329 20 C -0.033 4.033 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.043 0.957 25 H 0.118 0.882 26 H 0.062 0.938 27 H -0.029 1.029 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.815 -8.361 0.839 12.921 hybrid contribution -1.248 1.249 0.238 1.781 sum 8.568 -7.112 1.078 11.187 Atomic orbital electron populations 1.21607 0.93847 1.00540 1.02037 1.23494 0.96407 0.95092 0.96450 1.22278 0.99737 0.93049 0.92017 1.61871 1.02974 1.25982 1.33981 1.19837 0.86508 0.91986 0.95075 1.21491 1.02308 1.36870 0.94083 0.91549 1.25728 0.98452 0.96498 0.98728 1.70057 1.16888 1.44706 1.25913 0.85687 0.77447 0.78654 0.80320 1.19261 1.21779 1.19924 1.21841 0.92364 0.94121 0.98178 1.19422 0.88735 0.92776 1.04157 1.29674 0.93142 0.93353 0.91329 1.81208 1.13569 1.11792 1.11560 1.24081 1.01253 0.84922 0.91642 1.89597 1.95944 1.29092 1.18282 1.24198 1.01337 0.85715 0.92020 0.93882 0.91820 0.92889 0.95722 0.88174 0.93845 1.02853 0.93155 0.91864 0.95157 0.84528 0.84971 0.89816 0.87677 0.87953 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 7.43 71.98 0.53 -3.44 16 2 C -0.11 -2.92 1.16 -51.48 -0.06 -2.98 16 3 C 0.06 1.51 4.42 86.30 0.38 1.89 16 4 N -0.52 -17.33 4.11 -900.80 -3.70 -21.04 16 5 C 0.19 8.76 3.72 85.56 0.32 9.08 16 6 C -0.51 -25.85 8.37 25.60 0.21 -25.63 16 7 H 0.07 3.26 7.74 -2.91 -0.02 3.24 16 8 C 0.00 0.19 5.46 84.65 0.46 0.66 16 9 N -0.93 -53.51 13.29 21.45 0.28 -53.22 16 10 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 C 0.06 1.90 4.69 86.30 0.40 2.30 16 15 C -0.01 -0.21 5.85 28.79 0.17 -0.04 16 16 C 0.24 6.09 15.43 89.44 1.38 7.47 16 17 N -0.50 -15.79 18.54 20.00 0.37 -15.41 16 18 C 0.06 1.31 8.36 72.28 0.60 1.92 16 19 O -0.41 -10.75 12.37 -148.98 -1.84 -12.59 16 20 C 0.04 0.95 8.36 72.28 0.60 1.56 16 21 H 0.04 1.46 7.63 -2.39 -0.02 1.44 16 22 H 0.06 2.47 6.17 -2.39 -0.01 2.46 16 23 H 0.05 1.59 8.09 -2.39 -0.02 1.58 16 24 H 0.02 0.72 7.86 -2.39 -0.02 0.70 16 25 H 0.10 1.88 6.43 -2.39 -0.02 1.86 16 26 H 0.04 2.10 4.36 -2.38 -0.01 2.09 16 27 H -0.05 -2.42 8.04 -2.38 -0.02 -2.44 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.06 2.25 7.10 -2.39 -0.02 2.23 16 30 H 0.03 0.88 7.99 -2.39 -0.02 0.86 16 31 H 0.14 1.79 6.78 -2.38 -0.02 1.78 16 32 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 34 H 0.11 1.80 8.08 -2.39 -0.02 1.78 16 35 H 0.10 1.66 8.10 -2.39 -0.02 1.64 16 36 H 0.09 1.85 8.10 -2.39 -0.02 1.83 16 Total: -1.00 -63.66 299.44 3.21 -60.45 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.06 Total: 4.52 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 5.01 Total: -7.22 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -3.05 Total: -89.67 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -1.84 Total: -12.59 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -63.66 3.21 -60.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336647422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.413 kcal (2) G-P(sol) polarization free energy of solvation -63.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds