Wall clock time and date at job start Sun Mar 29 2020 22:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47332 * 100.59682 * 3 2 1 5 5 N 1.46895 * 109.47395 * 179.35207 * 4 3 2 6 6 C 1.46897 * 111.00200 * 297.27964 * 5 4 3 7 7 C 1.50700 * 109.47023 * 292.72702 * 6 5 4 8 8 H 1.07993 * 120.00228 * 355.02675 * 7 6 5 9 9 C 1.37876 * 119.99774 * 175.02427 * 7 6 5 10 10 N 1.31515 * 120.00388 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00008 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47319 * 90.00415 * 11 9 7 13 13 H 1.48503 * 109.47361 * 210.00280 * 11 9 7 14 14 H 1.48500 * 109.47161 * 330.00381 * 11 9 7 15 15 C 1.46900 * 111.00227 * 61.23406 * 5 4 3 16 16 C 1.53008 * 109.47029 * 66.04495 * 15 5 4 17 17 H 1.09001 * 110.56212 * 307.67950 * 16 15 5 18 18 C 1.54502 * 110.50972 * 185.00281 * 16 15 5 19 19 C 1.54474 * 104.18562 * 241.28655 * 18 16 15 20 20 O 1.44651 * 104.69566 * 336.19000 * 19 18 16 21 21 C 1.44427 * 105.36560 * 40.34428 * 20 19 18 22 22 H 1.09003 * 109.47285 * 340.59213 * 3 2 1 23 23 H 1.09007 * 109.46571 * 220.59552 * 3 2 1 24 24 H 1.09004 * 109.47301 * 59.34809 * 4 3 2 25 25 H 1.09001 * 109.47065 * 299.35340 * 4 3 2 26 26 H 1.09002 * 109.47091 * 52.72352 * 6 5 4 27 27 H 1.09001 * 109.47546 * 172.72333 * 6 5 4 28 28 H 0.96998 * 120.00255 * 179.97438 * 10 9 7 29 29 H 1.09009 * 109.46891 * 306.04915 * 15 5 4 30 30 H 1.08996 * 109.47773 * 186.04621 * 15 5 4 31 31 H 1.08997 * 110.51436 * 0.02562 * 18 16 15 32 32 H 1.09003 * 110.51334 * 122.57425 * 18 16 15 33 33 H 1.08996 * 110.37220 * 94.92132 * 19 18 16 34 34 H 1.09002 * 110.37611 * 217.26281 * 19 18 16 35 35 H 1.08994 * 110.37022 * 200.73187 * 21 20 19 36 36 H 1.09001 * 110.46437 * 78.44919 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.2661 -1.4178 5 7 4.5868 0.2822 -1.4150 6 6 5.0997 1.3735 -0.5761 7 6 4.7540 2.6975 -1.2075 8 1 4.2794 2.7258 -2.1771 9 6 5.0437 3.8727 -0.5472 10 7 5.6221 3.8383 0.6335 11 14 4.6158 5.5138 -1.3301 12 1 3.2447 5.9138 -0.9235 13 1 5.5858 6.5446 -0.8806 14 1 4.6768 5.3879 -2.8085 15 6 5.1266 -1.0134 -0.9814 16 6 4.7763 -2.0841 -2.0168 17 1 3.7068 -2.0779 -2.2270 18 6 5.2234 -3.4790 -1.5255 19 6 6.2480 -3.9429 -2.5844 20 8 5.9077 -3.1966 -3.7759 21 6 5.5845 -1.8665 -3.3151 22 1 2.9718 -0.9685 0.3415 23 1 2.9709 0.7812 0.6688 24 1 2.7447 1.2301 -1.7637 25 1 2.7645 -0.5206 -2.0843 26 1 4.6476 1.3141 0.4139 27 1 6.1825 1.2852 -0.4869 28 1 5.8262 4.6651 1.0978 29 1 4.6933 -1.2836 -0.0184 30 1 6.2100 -0.9418 -0.8851 31 1 5.6937 -3.4060 -0.5449 32 1 4.3746 -4.1619 -1.4906 33 1 7.2613 -3.7020 -2.2630 34 1 6.1503 -5.0136 -2.7636 35 1 4.9789 -1.3450 -4.0562 36 1 6.4944 -1.3040 -3.1060 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336651514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:55 Heat of formation + Delta-G solvation = -21.681882 kcal Electronic energy + Delta-G solvation = -17131.761850 eV Core-core repulsion = 14422.911874 eV Total energy + Delta-G solvation = -2708.849977 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.46558 -37.64270 -35.96279 -33.03944 -32.25869 -30.34725 -29.19017 -26.90023 -25.04018 -23.57642 -22.57557 -20.53672 -19.47279 -17.48285 -16.51364 -16.30577 -15.48156 -15.31227 -14.91631 -14.62162 -14.20459 -13.83869 -13.67511 -13.31182 -12.73437 -12.45887 -12.10507 -12.04520 -11.67243 -11.50168 -11.35114 -11.25468 -11.08162 -10.85836 -10.68210 -10.64276 -10.42728 -10.16394 -9.83031 -9.60579 -9.29741 -8.51882 -7.43187 -6.11628 -4.13246 3.06026 3.08866 3.27909 3.35253 3.38803 4.12737 4.26088 4.38060 4.61632 4.84798 4.96206 5.14702 5.22589 5.24981 5.39126 5.43407 5.52769 5.68899 5.72181 5.79710 5.82226 5.92370 5.99794 6.10493 6.16892 6.26072 6.42411 6.58131 6.94967 7.11548 7.18631 7.69815 7.82946 7.94526 8.02408 8.39425 8.94965 9.52314 10.98632 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019368 B = 0.007067 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.352993 B = 3960.882619 C = 4891.610788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.224 3.776 3 C -0.074 4.074 4 C 0.070 3.930 5 N -0.527 5.527 6 C 0.186 3.814 7 C -0.510 4.510 8 H 0.065 0.935 9 C 0.058 3.942 10 N -0.897 5.897 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.056 3.944 16 C -0.118 4.118 17 H 0.083 0.917 18 C -0.152 4.152 19 C 0.046 3.954 20 O -0.387 6.387 21 C 0.061 3.939 22 H 0.099 0.901 23 H 0.121 0.879 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.004 0.996 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.997 -12.317 -2.230 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.093 4.093 3 C -0.116 4.116 4 C -0.060 4.060 5 N -0.250 5.250 6 C 0.062 3.938 7 C -0.548 4.548 8 H 0.083 0.917 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.073 4.073 16 C -0.137 4.137 17 H 0.101 0.899 18 C -0.191 4.191 19 C -0.031 4.031 20 O -0.306 6.306 21 C -0.015 4.015 22 H 0.117 0.883 23 H 0.139 0.861 24 H 0.110 0.890 25 H 0.083 0.917 26 H 0.022 0.978 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.440 -12.171 -2.796 12.496 hybrid contribution 0.024 0.965 0.903 1.322 sum -0.416 -11.206 -1.894 11.373 Atomic orbital electron populations 1.81145 1.13204 1.09930 1.09651 1.29292 0.95289 0.92288 0.92465 1.20242 0.81508 1.05243 1.04602 1.22093 0.89354 1.03081 0.91511 1.62375 1.04834 1.02877 1.54883 1.19856 0.95547 0.87691 0.90746 1.21133 1.39566 0.89817 1.04330 0.91727 1.24956 0.95239 0.99307 0.94878 1.69934 1.42243 1.27770 1.13736 0.86552 0.78095 0.83391 0.79752 1.20753 1.21280 1.19716 1.22226 1.00358 0.89818 0.94888 1.22588 1.01238 0.93661 0.96256 0.89913 1.22985 0.99557 0.96869 0.99666 1.23382 0.97630 0.96730 0.85380 1.89116 1.88796 1.23503 1.29166 1.23403 0.98862 0.83802 0.95468 0.88273 0.86085 0.88967 0.91701 0.97801 0.95260 0.92848 0.94797 0.90845 0.90463 0.91043 0.92474 0.89746 0.88924 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.29 18.54 42.16 0.78 -7.51 16 2 C 0.22 3.55 15.43 -20.76 -0.32 3.23 16 3 C -0.07 -1.06 5.05 -29.52 -0.15 -1.21 16 4 C 0.07 1.10 4.92 -3.83 -0.02 1.08 16 5 N -0.53 -9.21 4.58 -236.07 -1.08 -10.29 16 6 C 0.19 4.13 4.54 -4.98 -0.02 4.11 16 7 C -0.51 -12.90 8.39 -34.44 -0.29 -13.19 16 8 H 0.06 1.64 7.39 -52.49 -0.39 1.25 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -24.86 13.29 55.43 0.74 -24.12 16 11 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 15 C 0.06 0.78 3.89 -3.82 -0.01 0.77 16 16 C -0.12 -1.46 3.07 -89.05 -0.27 -1.74 16 17 H 0.08 1.02 6.29 -51.93 -0.33 0.70 16 18 C -0.15 -1.57 6.73 -25.17 -0.17 -1.74 16 19 C 0.05 0.49 7.65 37.93 0.29 0.78 16 20 O -0.39 -5.43 11.65 -35.23 -0.41 -5.84 16 21 C 0.06 0.83 7.08 37.93 0.27 1.10 16 22 H 0.10 1.18 6.34 -51.93 -0.33 0.85 16 23 H 0.12 1.97 6.28 -51.92 -0.33 1.64 16 24 H 0.09 1.66 6.98 -51.93 -0.36 1.30 16 25 H 0.06 0.90 6.29 -51.93 -0.33 0.57 16 26 H 0.00 0.10 6.02 -51.93 -0.31 -0.21 16 27 H 0.03 0.71 7.91 -51.93 -0.41 0.30 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.03 0.44 6.05 -51.92 -0.31 0.13 16 30 H 0.07 1.08 7.74 -51.93 -0.40 0.68 16 31 H 0.08 0.72 7.73 -51.93 -0.40 0.32 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.07 0.93 7.74 -51.93 -0.40 0.53 16 LS Contribution 294.78 15.07 4.44 4.44 Total: -1.00 -28.46 294.78 -6.48 -34.94 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.13 Total: -1.91 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.80 Total: -5.37 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.44 Total: -41.92 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.41 Total: -5.84 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.46 -6.48 -34.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336651514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.259 kcal (2) G-P(sol) polarization free energy of solvation -28.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds