Wall clock time and date at job start Sun Mar 29 2020 22:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47332 * 100.59682 * 3 2 1 5 5 N 1.46895 * 109.47395 * 179.35207 * 4 3 2 6 6 C 1.46897 * 111.00200 * 297.27964 * 5 4 3 7 7 C 1.50700 * 109.47023 * 292.72702 * 6 5 4 8 8 H 1.07993 * 120.00228 * 355.02675 * 7 6 5 9 9 C 1.37876 * 119.99774 * 175.02427 * 7 6 5 10 10 N 1.31515 * 120.00388 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00008 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47319 * 90.00415 * 11 9 7 13 13 H 1.48503 * 109.47361 * 210.00280 * 11 9 7 14 14 H 1.48500 * 109.47161 * 330.00381 * 11 9 7 15 15 C 1.46900 * 111.00227 * 61.23406 * 5 4 3 16 16 C 1.53008 * 109.47029 * 66.04495 * 15 5 4 17 17 H 1.09001 * 110.56212 * 307.67950 * 16 15 5 18 18 C 1.54502 * 110.50972 * 185.00281 * 16 15 5 19 19 C 1.54474 * 104.18562 * 241.28655 * 18 16 15 20 20 O 1.44651 * 104.69566 * 336.19000 * 19 18 16 21 21 C 1.44427 * 105.36560 * 40.34428 * 20 19 18 22 22 H 1.09003 * 109.47285 * 340.59213 * 3 2 1 23 23 H 1.09007 * 109.46571 * 220.59552 * 3 2 1 24 24 H 1.09004 * 109.47301 * 59.34809 * 4 3 2 25 25 H 1.09001 * 109.47065 * 299.35340 * 4 3 2 26 26 H 1.09002 * 109.47091 * 52.72352 * 6 5 4 27 27 H 1.09001 * 109.47546 * 172.72333 * 6 5 4 28 28 H 0.96998 * 120.00255 * 179.97438 * 10 9 7 29 29 H 1.09009 * 109.46891 * 306.04915 * 15 5 4 30 30 H 1.08996 * 109.47773 * 186.04621 * 15 5 4 31 31 H 1.08997 * 110.51436 * 0.02562 * 18 16 15 32 32 H 1.09003 * 110.51334 * 122.57425 * 18 16 15 33 33 H 1.08996 * 110.37220 * 94.92132 * 19 18 16 34 34 H 1.09002 * 110.37611 * 217.26281 * 19 18 16 35 35 H 1.08994 * 110.37022 * 200.73187 * 21 20 19 36 36 H 1.09001 * 110.46437 * 78.44919 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.2661 -1.4178 5 7 4.5868 0.2822 -1.4150 6 6 5.0997 1.3735 -0.5761 7 6 4.7540 2.6975 -1.2075 8 1 4.2794 2.7258 -2.1771 9 6 5.0437 3.8727 -0.5472 10 7 5.6221 3.8383 0.6335 11 14 4.6158 5.5138 -1.3301 12 1 3.2447 5.9138 -0.9235 13 1 5.5858 6.5446 -0.8806 14 1 4.6768 5.3879 -2.8085 15 6 5.1266 -1.0134 -0.9814 16 6 4.7763 -2.0841 -2.0168 17 1 3.7068 -2.0779 -2.2270 18 6 5.2234 -3.4790 -1.5255 19 6 6.2480 -3.9429 -2.5844 20 8 5.9077 -3.1966 -3.7759 21 6 5.5845 -1.8665 -3.3151 22 1 2.9718 -0.9685 0.3415 23 1 2.9709 0.7812 0.6688 24 1 2.7447 1.2301 -1.7637 25 1 2.7645 -0.5206 -2.0843 26 1 4.6476 1.3141 0.4139 27 1 6.1825 1.2852 -0.4869 28 1 5.8262 4.6651 1.0978 29 1 4.6933 -1.2836 -0.0184 30 1 6.2100 -0.9418 -0.8851 31 1 5.6937 -3.4060 -0.5449 32 1 4.3746 -4.1619 -1.4906 33 1 7.2613 -3.7020 -2.2630 34 1 6.1503 -5.0136 -2.7636 35 1 4.9789 -1.3450 -4.0562 36 1 6.4944 -1.3040 -3.1060 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336651514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:54 Heat of formation + Delta-G solvation = -40.183804 kcal Electronic energy + Delta-G solvation = -17132.564154 eV Core-core repulsion = 14422.911874 eV Total energy + Delta-G solvation = -2709.652280 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.52382 -38.92722 -37.32027 -34.80730 -33.50790 -31.67017 -30.29086 -28.51023 -26.28129 -25.18232 -23.58702 -21.83381 -20.63723 -18.83135 -18.19857 -17.51535 -16.70153 -16.53525 -16.26154 -15.98705 -15.45487 -15.18258 -15.02422 -14.51986 -14.22656 -13.66131 -13.49560 -13.45683 -13.00169 -12.95322 -12.83766 -12.53290 -12.43567 -12.29557 -12.02957 -11.82332 -11.80968 -11.61833 -11.21176 -10.97749 -10.62380 -10.51815 -8.86710 -8.12963 -6.19265 1.43475 1.46224 1.55035 1.76986 1.80490 2.44852 3.00236 3.18601 3.21665 3.42616 3.86300 3.98539 4.12448 4.21320 4.28517 4.33226 4.48156 4.59501 4.66447 4.79061 4.84826 4.95010 4.98955 5.03173 5.10437 5.21416 5.25184 5.39693 5.42468 5.48950 5.75806 5.99524 6.17289 6.38400 6.59797 6.73299 6.98107 7.49948 8.96445 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019368 B = 0.007067 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.352993 B = 3960.882619 C = 4891.610788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.245 3.755 3 C -0.061 4.061 4 C 0.072 3.928 5 N -0.534 5.534 6 C 0.200 3.800 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.009 3.991 10 N -0.929 5.929 11 Si 0.949 3.051 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.268 1.268 15 C 0.058 3.942 16 C -0.111 4.111 17 H 0.089 0.911 18 C -0.145 4.145 19 C 0.038 3.962 20 O -0.407 6.407 21 C 0.060 3.940 22 H 0.133 0.867 23 H 0.104 0.896 24 H 0.066 0.934 25 H 0.091 0.909 26 H -0.004 1.004 27 H 0.004 0.996 28 H 0.261 0.739 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 -13.724 -2.355 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.072 4.072 3 C -0.103 4.103 4 C -0.058 4.058 5 N -0.256 5.256 6 C 0.074 3.926 7 C -0.553 4.553 8 H 0.078 0.922 9 C -0.189 4.189 10 N -0.570 5.570 11 Si 0.776 3.224 12 H -0.205 1.205 13 H -0.213 1.213 14 H -0.193 1.193 15 C -0.070 4.070 16 C -0.130 4.130 17 H 0.107 0.893 18 C -0.183 4.183 19 C -0.038 4.038 20 O -0.327 6.327 21 C -0.016 4.016 22 H 0.151 0.849 23 H 0.122 0.878 24 H 0.084 0.916 25 H 0.109 0.891 26 H 0.014 0.986 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.835 -13.596 -2.935 13.934 hybrid contribution 0.185 1.338 0.904 1.625 sum -0.650 -12.258 -2.031 12.442 Atomic orbital electron populations 1.81172 1.14290 1.11260 1.10764 1.29406 0.95265 0.91118 0.91379 1.20178 0.80415 1.06423 1.03277 1.22044 0.88191 1.02723 0.92827 1.62215 1.05921 1.03368 1.54138 1.19497 0.93982 0.88312 0.90789 1.21486 1.38414 0.91374 1.04023 0.92187 1.25650 0.95513 1.02353 0.95375 1.70029 1.43722 1.28347 1.14944 0.85683 0.77717 0.79966 0.79064 1.20533 1.21273 1.19283 1.22273 0.99896 0.88462 0.96378 1.22515 1.01284 0.94274 0.94950 0.89324 1.22972 1.00008 0.95403 0.99944 1.23618 0.98084 0.97547 0.84549 1.89096 1.88988 1.23636 1.30961 1.23342 0.98410 0.83861 0.96034 0.84901 0.87817 0.91564 0.89087 0.98629 0.97759 0.92974 0.92898 0.91671 0.89130 0.89451 0.92067 0.87767 0.89633 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -17.20 18.54 20.01 0.37 -16.83 16 2 C 0.25 7.34 15.43 89.44 1.38 8.72 16 3 C -0.06 -1.63 5.05 28.79 0.15 -1.49 16 4 C 0.07 2.16 4.92 86.30 0.42 2.59 16 5 N -0.53 -18.13 4.58 -900.79 -4.13 -22.26 16 6 C 0.20 8.91 4.54 85.56 0.39 9.29 16 7 C -0.51 -26.18 8.39 25.60 0.21 -25.97 16 8 H 0.06 3.05 7.39 -2.91 -0.02 3.03 16 9 C 0.01 0.50 5.46 84.65 0.46 0.96 16 10 N -0.93 -52.02 13.29 21.45 0.28 -51.74 16 11 Si 0.95 42.54 29.54 68.60 2.03 44.57 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 15 C 0.06 1.51 3.89 86.31 0.34 1.85 16 16 C -0.11 -2.46 3.07 -9.78 -0.03 -2.49 16 17 H 0.09 1.89 6.29 -2.39 -0.02 1.87 16 18 C -0.15 -2.48 6.73 31.61 0.21 -2.26 16 19 C 0.04 0.73 7.65 72.48 0.55 1.28 16 20 O -0.41 -10.77 11.65 -148.98 -1.74 -12.51 16 21 C 0.06 1.56 7.08 72.48 0.51 2.08 16 22 H 0.13 2.67 6.34 -2.39 -0.02 2.66 16 23 H 0.10 3.26 6.28 -2.38 -0.01 3.25 16 24 H 0.07 2.35 6.98 -2.38 -0.02 2.33 16 25 H 0.09 2.28 6.29 -2.39 -0.02 2.27 16 26 H 0.00 -0.18 6.02 -2.39 -0.01 -0.20 16 27 H 0.00 0.21 7.91 -2.39 -0.02 0.19 16 28 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.05 1.21 6.05 -2.38 -0.01 1.19 16 30 H 0.06 1.84 7.74 -2.39 -0.02 1.82 16 31 H 0.09 1.33 7.73 -2.39 -0.02 1.32 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.05 1.48 7.74 -2.39 -0.02 1.46 16 Total: -1.00 -60.84 294.78 2.49 -58.35 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.07 Total: 5.85 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 4.60 Total: -5.44 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -3.47 Total: -90.82 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -1.74 Total: -12.51 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -60.84 2.49 -58.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336651514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.166 kcal (2) G-P(sol) polarization free energy of solvation -60.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds