Wall clock time and date at job start Sun Mar 29 2020 22:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47383 * 2 1 4 4 N 1.30173 * 126.80696 * 270.02999 * 3 2 1 5 5 O 1.20915 * 111.60588 * 179.97438 * 4 3 2 6 6 C 1.34037 * 111.57016 * 359.75694 * 5 4 3 7 7 C 1.35451 * 106.44520 * 0.38190 * 6 5 4 8 8 C 1.50704 * 128.00958 * 179.90828 * 7 6 5 9 9 N 1.46895 * 109.47030 * 259.68216 * 8 7 6 10 10 C 1.46906 * 110.99789 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47053 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.46891 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46946 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00275 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99908 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99697 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99899 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99714 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99774 * 17 15 13 20 20 H 1.48498 * 109.46997 * 329.99585 * 17 15 13 21 21 H 1.08996 * 109.46979 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46904 * 300.00113 * 1 2 3 23 23 H 1.09001 * 109.47103 * 59.99293 * 1 2 3 24 24 H 1.09007 * 109.46814 * 240.00276 * 2 1 3 25 25 H 1.09001 * 109.47103 * 120.00707 * 2 1 3 26 26 H 1.08002 * 126.77868 * 180.28905 * 6 5 4 27 27 H 1.08996 * 109.46908 * 139.68034 * 8 7 6 28 28 H 1.09002 * 109.46622 * 19.68207 * 8 7 6 29 29 H 1.00899 * 111.00672 * 56.04735 * 9 8 7 30 30 H 1.08992 * 109.47459 * 299.99826 * 10 9 8 31 31 H 1.09004 * 109.47040 * 59.99976 * 10 9 8 32 32 H 1.09001 * 109.47142 * 300.00160 * 11 10 9 33 33 H 1.09004 * 109.47006 * 60.00213 * 11 10 9 34 34 H 1.09001 * 109.47372 * 300.00036 * 12 11 10 35 35 H 1.09004 * 109.47108 * 60.00292 * 12 11 10 36 36 H 0.97007 * 119.99539 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1563 -1.0422 5 8 2.6806 3.2565 -0.7252 6 6 2.7254 3.3983 0.6069 7 6 2.3146 2.2193 1.1321 8 6 2.1826 1.8470 2.5865 9 7 3.3482 1.0524 2.9962 10 6 3.2541 0.6711 4.4118 11 6 4.4826 -0.1539 4.8005 12 6 4.3849 -0.5505 6.2749 13 6 5.5952 -1.3625 6.6579 14 1 6.3581 -1.5742 5.9234 15 6 5.7287 -1.8353 7.9463 16 7 4.8000 -1.5771 8.8409 17 14 7.2293 -2.8412 8.4213 18 1 8.2996 -1.9342 8.9081 19 1 6.8639 -3.7977 9.4969 20 1 7.7174 -3.5917 7.2364 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.0305 4.2784 1.1536 27 1 1.2748 1.2614 2.7306 28 1 2.1302 2.7531 3.1901 29 1 4.2072 1.5488 2.8122 30 1 3.2094 1.5691 5.0278 31 1 2.3536 0.0774 4.5690 32 1 4.5269 -1.0520 4.1844 33 1 5.3834 0.4395 4.6431 34 1 4.3408 0.3479 6.8907 35 1 3.4841 -1.1437 6.4327 36 1 4.8941 -1.9094 9.7475 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339236108.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:23 Heat of formation + Delta-G solvation = 34.066555 kcal Electronic energy + Delta-G solvation = -16224.773179 eV Core-core repulsion = 13518.340636 eV Total energy + Delta-G solvation = -2706.432543 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.00236 -37.04812 -35.37998 -33.69500 -32.41130 -31.16958 -30.76258 -27.22287 -25.03699 -24.43851 -22.31360 -21.44118 -20.98365 -20.11004 -17.64451 -17.47481 -16.34233 -15.82019 -14.97717 -14.63226 -14.53315 -14.18501 -14.00198 -13.59275 -13.30635 -12.73820 -12.39043 -11.95478 -11.80070 -11.64869 -11.57921 -11.40045 -10.94365 -10.81283 -10.60095 -10.53240 -9.96779 -9.71951 -9.66376 -9.31487 -9.06278 -8.35025 -8.27094 -6.00159 -4.02195 1.39033 2.12404 3.15908 3.32120 3.38376 3.42257 4.03986 4.39648 4.45634 4.56428 4.75526 4.97898 5.14248 5.17058 5.26555 5.35855 5.42087 5.57039 5.62970 5.75051 5.78253 5.87716 5.91102 5.96450 6.14687 6.27309 6.67793 6.70994 7.11019 7.24089 7.52279 7.67608 7.82001 8.00098 8.19826 8.43362 9.04986 9.61926 11.11286 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040868 B = 0.003681 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.964831 B = 7605.191680 C = 7779.536438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C 0.042 3.958 4 N -0.372 5.372 5 O 0.093 5.907 6 C -0.061 4.061 7 C -0.189 4.189 8 C 0.133 3.867 9 N -0.686 5.686 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.214 0.786 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.339 0.661 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.014 0.986 35 H 0.016 0.984 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.501 8.719 -15.365 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.118 4.118 4 N -0.078 5.078 5 O 0.030 5.970 6 C -0.144 4.144 7 C -0.193 4.193 8 C 0.004 3.996 9 N -0.317 5.317 10 C -0.069 4.069 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.117 0.883 26 H 0.230 0.770 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.157 0.843 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.035 0.965 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.885 7.898 -16.729 20.110 hybrid contribution 1.043 0.377 1.735 2.059 sum -6.842 8.274 -14.993 18.441 Atomic orbital electron populations 1.21707 0.94227 1.02302 1.02004 1.19987 0.96014 0.88227 1.04480 1.23498 1.01075 0.99128 0.88067 1.73824 1.16714 0.92878 1.24349 1.84802 1.62488 1.26822 1.22923 1.25809 1.03539 1.01206 0.83822 1.21293 1.06670 0.93605 0.97774 1.20126 0.95895 0.96383 0.87242 1.60571 1.03820 1.45856 1.21493 1.22161 1.01088 0.98460 0.85204 1.21625 0.94427 0.98360 1.00073 1.19069 0.97198 0.96342 0.88966 1.21258 1.06000 1.32907 0.95598 0.92674 1.25027 0.96386 0.96409 0.96673 1.69966 1.33772 1.46232 1.03645 0.86596 0.83104 0.80105 0.78224 1.20703 1.21224 1.19839 0.91589 0.92396 0.92836 0.90403 0.88325 0.76990 0.89716 0.94094 0.84343 0.95573 0.91278 0.92503 0.93648 0.96805 0.96533 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.90 37.16 0.37 -0.96 16 2 C -0.05 -0.53 6.44 -27.88 -0.18 -0.71 16 3 C 0.04 0.52 6.58 -82.10 -0.54 -0.02 16 4 N -0.37 -4.96 12.07 33.42 0.40 -4.55 16 5 O 0.09 1.09 11.20 17.19 0.19 1.28 16 6 C -0.06 -0.58 12.26 29.74 0.36 -0.21 16 7 C -0.19 -2.12 5.84 -104.42 -0.61 -2.73 16 8 C 0.13 1.51 6.17 -4.98 -0.03 1.48 16 9 N -0.69 -9.40 6.49 -115.06 -0.75 -10.15 16 10 C 0.06 0.96 5.68 -3.82 -0.02 0.94 16 11 C -0.11 -2.16 5.41 -26.73 -0.14 -2.31 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 17 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 25 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.21 1.14 8.06 -52.49 -0.42 0.72 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.34 4.46 8.72 -39.29 -0.34 4.12 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -31.14 310.41 -6.90 -38.05 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.80 Total: -2.12 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.34 Total: -17.65 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.39 Total: -40.90 kcal Atomic # 8 Polarization: 1.09 SS G_CDS: 0.19 Total: 1.28 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.14 -6.90 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339236108.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.116 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds