Wall clock time and date at job start Sun Mar 29 2020 22:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47383 * 2 1 4 4 N 1.30173 * 126.80696 * 270.02999 * 3 2 1 5 5 O 1.20915 * 111.60588 * 179.97438 * 4 3 2 6 6 C 1.34037 * 111.57016 * 359.75694 * 5 4 3 7 7 C 1.35451 * 106.44520 * 0.38190 * 6 5 4 8 8 C 1.50704 * 128.00958 * 179.90828 * 7 6 5 9 9 N 1.46895 * 109.47030 * 259.68216 * 8 7 6 10 10 C 1.46906 * 110.99789 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47053 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.46891 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46946 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00275 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99908 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99697 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99899 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99714 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99774 * 17 15 13 20 20 H 1.48498 * 109.46997 * 329.99585 * 17 15 13 21 21 H 1.08996 * 109.46979 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46904 * 300.00113 * 1 2 3 23 23 H 1.09001 * 109.47103 * 59.99293 * 1 2 3 24 24 H 1.09007 * 109.46814 * 240.00276 * 2 1 3 25 25 H 1.09001 * 109.47103 * 120.00707 * 2 1 3 26 26 H 1.08002 * 126.77868 * 180.28905 * 6 5 4 27 27 H 1.08996 * 109.46908 * 139.68034 * 8 7 6 28 28 H 1.09002 * 109.46622 * 19.68207 * 8 7 6 29 29 H 1.00899 * 111.00672 * 56.04735 * 9 8 7 30 30 H 1.08992 * 109.47459 * 299.99826 * 10 9 8 31 31 H 1.09004 * 109.47040 * 59.99976 * 10 9 8 32 32 H 1.09001 * 109.47142 * 300.00160 * 11 10 9 33 33 H 1.09004 * 109.47006 * 60.00213 * 11 10 9 34 34 H 1.09001 * 109.47372 * 300.00036 * 12 11 10 35 35 H 1.09004 * 109.47108 * 60.00292 * 12 11 10 36 36 H 0.97007 * 119.99539 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1563 -1.0422 5 8 2.6806 3.2565 -0.7252 6 6 2.7254 3.3983 0.6069 7 6 2.3146 2.2193 1.1321 8 6 2.1826 1.8470 2.5865 9 7 3.3482 1.0524 2.9962 10 6 3.2541 0.6711 4.4118 11 6 4.4826 -0.1539 4.8005 12 6 4.3849 -0.5505 6.2749 13 6 5.5952 -1.3625 6.6579 14 1 6.3581 -1.5742 5.9234 15 6 5.7287 -1.8353 7.9463 16 7 4.8000 -1.5771 8.8409 17 14 7.2293 -2.8412 8.4213 18 1 8.2996 -1.9342 8.9081 19 1 6.8639 -3.7977 9.4969 20 1 7.7174 -3.5917 7.2364 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.0305 4.2784 1.1536 27 1 1.2748 1.2614 2.7306 28 1 2.1302 2.7531 3.1901 29 1 4.2072 1.5488 2.8122 30 1 3.2094 1.5691 5.0278 31 1 2.3536 0.0774 4.5690 32 1 4.5269 -1.0520 4.1844 33 1 5.3834 0.4395 4.6431 34 1 4.3408 0.3479 6.8907 35 1 3.4841 -1.1437 6.4327 36 1 4.8941 -1.9094 9.7475 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339236108.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:23 Heat of formation + Delta-G solvation = 14.173984 kcal Electronic energy + Delta-G solvation = -16225.635786 eV Core-core repulsion = 13518.340636 eV Total energy + Delta-G solvation = -2707.295150 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.88485 -38.16070 -36.49441 -35.38016 -33.79129 -32.27524 -32.00248 -28.74658 -26.47764 -25.31091 -23.94813 -22.42091 -21.80576 -21.74254 -18.54035 -18.52396 -18.28374 -16.95270 -16.54787 -16.00981 -15.51609 -15.38288 -15.21294 -14.62206 -14.31246 -14.23553 -13.61728 -13.48984 -13.21280 -12.97535 -12.71671 -12.48795 -12.43527 -12.35545 -12.23380 -11.77015 -11.49026 -11.39711 -11.14589 -10.80806 -10.53772 -10.42669 -9.35876 -8.19195 -6.29715 0.59497 1.23460 1.41095 1.42109 1.53460 2.41490 2.42661 3.14201 3.16145 3.43718 3.64549 3.93402 4.12122 4.28879 4.35718 4.38435 4.40362 4.47520 4.62851 4.76126 4.82280 4.85948 5.01004 5.02205 5.10486 5.13793 5.16372 5.26933 5.33177 5.53908 5.77924 5.88154 6.03765 6.28868 6.45484 6.87479 7.36414 7.39519 8.92597 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040868 B = 0.003681 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.964831 B = 7605.191680 C = 7779.536438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.029 3.971 4 N -0.401 5.401 5 O 0.087 5.913 6 C -0.038 4.038 7 C -0.208 4.208 8 C 0.139 3.861 9 N -0.689 5.689 10 C 0.074 3.926 11 C -0.093 4.093 12 C 0.024 3.976 13 C -0.544 4.544 14 H 0.058 0.942 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.265 1.265 21 H 0.078 0.922 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.255 0.745 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.344 0.656 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.049 0.951 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 9.311 -15.765 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C -0.130 4.130 4 N -0.108 5.108 5 O 0.025 5.975 6 C -0.120 4.120 7 C -0.213 4.213 8 C 0.010 3.990 9 N -0.321 5.321 10 C -0.055 4.055 11 C -0.131 4.131 12 C -0.013 4.013 13 C -0.582 4.582 14 H 0.076 0.924 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.189 1.189 21 H 0.097 0.903 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.271 0.729 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.162 0.838 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.011 0.989 35 H 0.011 0.989 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.289 8.505 -17.152 20.486 hybrid contribution 0.839 0.238 1.849 2.045 sum -6.450 8.743 -15.303 18.768 Atomic orbital electron populations 1.21666 0.93039 1.03120 1.01828 1.20006 0.97042 0.87706 1.03990 1.23819 1.00931 0.99697 0.88516 1.73825 1.18169 0.93644 1.25175 1.84771 1.62336 1.26301 1.24093 1.26549 1.00820 1.01774 0.82871 1.21304 1.08328 0.94333 0.97317 1.20084 0.94595 0.96749 0.87564 1.60452 1.05085 1.47187 1.19372 1.21827 0.98731 0.97916 0.86983 1.21372 0.96671 0.98822 0.96240 1.18978 0.95355 0.94734 0.92249 1.21715 1.06948 1.33424 0.96079 0.92412 1.25958 0.99593 0.97556 0.96659 1.70090 1.35812 1.47327 1.04106 0.85474 0.79158 0.78508 0.78079 1.19728 1.20711 1.18898 0.90301 0.92339 0.93149 0.90555 0.89058 0.72880 0.89854 0.92214 0.83783 0.95175 0.91640 0.93148 0.93207 0.98857 0.98892 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.90 71.98 0.71 -1.73 16 2 C -0.05 -1.05 6.44 29.85 0.19 -0.85 16 3 C 0.03 0.70 6.58 43.58 0.29 0.99 16 4 N -0.40 -10.34 12.07 -49.57 -0.60 -10.94 16 5 O 0.09 1.88 11.20 71.67 0.80 2.69 16 6 C -0.04 -0.61 12.26 67.18 0.82 0.21 16 7 C -0.21 -4.26 5.84 -19.73 -0.12 -4.37 16 8 C 0.14 2.85 6.17 85.56 0.53 3.38 16 9 N -0.69 -17.71 6.49 -517.93 -3.36 -21.07 16 10 C 0.07 2.34 5.68 86.30 0.49 2.83 16 11 C -0.09 -3.73 5.41 30.59 0.17 -3.57 16 12 C 0.02 1.28 4.97 29.85 0.15 1.42 16 13 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 14 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 15 C 0.00 0.00 5.46 84.66 0.46 0.46 16 16 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 17 Si 0.96 44.24 29.54 68.60 2.03 46.26 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.26 1.62 8.06 -2.91 -0.02 1.59 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.34 8.32 8.72 -89.69 -0.78 7.54 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 34 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 36 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 Total: -1.00 -66.95 310.41 3.35 -63.60 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.27 Total: 7.81 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 3.93 Total: -32.03 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -3.68 Total: -88.33 kcal Atomic # 8 Polarization: 1.88 SS G_CDS: 0.80 Total: 2.69 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -66.95 3.35 -63.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339236108.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.777 kcal (2) G-P(sol) polarization free energy of solvation -66.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds