Wall clock time and date at job start Sun Mar 29 2020 22:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.47839 * 110.99738 * 290.84191 * 13 12 10 15 15 C 1.54908 * 104.79608 * 213.63728 * 14 13 12 16 16 C 1.55139 * 101.65097 * 37.06740 * 15 14 13 17 17 H 1.09008 * 110.70420 * 82.73131 * 16 15 14 18 18 C 1.52999 * 110.85511 * 205.89296 * 16 15 14 19 19 C 1.53001 * 117.49946 * 242.43254 * 18 16 15 20 20 C 1.53004 * 117.49717 * 173.77404 * 18 16 15 21 21 C 1.47437 * 110.99793 * 169.99772 * 13 12 10 22 22 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 24 24 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 25 25 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 26 26 H 1.09004 * 110.37683 * 332.46312 * 14 13 12 27 27 H 1.08996 * 110.37827 * 94.80538 * 14 13 12 28 28 H 1.09004 * 110.99133 * 278.98142 * 15 14 13 29 29 H 1.09001 * 111.02629 * 155.17132 * 15 14 13 30 30 H 1.08994 * 115.55002 * 28.10717 * 18 16 15 31 31 H 1.09000 * 117.49876 * 0.02562 * 19 18 16 32 32 H 1.09004 * 117.49709 * 145.02327 * 19 18 16 33 33 H 1.08995 * 117.49848 * 214.97966 * 20 18 16 34 34 H 1.09000 * 117.50193 * 359.97438 * 20 18 16 35 35 H 1.09004 * 109.89060 * 242.65914 * 21 13 12 36 36 H 1.09004 * 109.89119 * 3.68745 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 2.9170 -6.0562 -1.3154 15 6 3.1555 -7.5693 -1.5460 16 6 1.8438 -8.1818 -0.9884 17 1 1.0519 -8.1430 -1.7364 18 6 2.0710 -9.6199 -0.5181 19 6 1.2934 -10.7277 -1.2316 20 6 0.9129 -10.3215 0.1944 21 6 1.5114 -7.2632 0.2062 22 1 -0.4849 0.8400 0.0004 23 1 0.3535 -2.3907 -0.0068 24 1 0.6169 -4.9255 0.8690 25 1 0.6176 -4.9158 -0.9109 26 1 2.3043 -5.6423 -2.1164 27 1 3.8680 -5.5274 -1.2522 28 1 4.0203 -7.9187 -0.9818 29 1 3.2692 -7.7900 -2.6074 30 1 3.0820 -9.8506 -0.1827 31 1 0.6202 -10.4320 -2.0363 32 1 1.7928 -11.6874 -1.3652 33 1 1.1622 -11.0140 0.9983 34 1 -0.0107 -9.7584 0.3285 35 1 1.8700 -7.7140 1.1316 36 1 0.4349 -7.1023 0.2651 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344019994.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:05 Heat of formation + Delta-G solvation = -10.671018 kcal Electronic energy + Delta-G solvation = -16779.718303 eV Core-core repulsion = 14071.345793 eV Total energy + Delta-G solvation = -2708.372510 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.44969 -37.92966 -36.37305 -33.83998 -31.64401 -31.04037 -28.61262 -26.74579 -24.28373 -22.59124 -22.15700 -20.92513 -19.78486 -19.12378 -17.82348 -16.16567 -16.01195 -15.33537 -14.83449 -14.46018 -14.34182 -13.76354 -13.62004 -13.02373 -12.81498 -12.43091 -11.98902 -11.72663 -11.64790 -11.59402 -11.41817 -11.10061 -11.01929 -10.88450 -10.54316 -10.36311 -10.20916 -10.16683 -9.95442 -9.44796 -8.37123 -7.91826 -7.77064 -6.37193 -3.77674 3.20748 3.28885 3.35202 3.62859 3.97321 4.11372 4.32805 4.46769 4.65304 4.74954 4.93254 5.07238 5.15104 5.27464 5.36356 5.41199 5.47828 5.55172 5.66467 5.74658 5.77589 5.88152 5.93940 5.95715 6.02599 6.11819 6.17665 6.35598 6.40017 6.56686 7.36377 7.39457 7.59448 8.11586 8.67718 9.23324 9.60274 10.12851 10.80868 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.065931 B = 0.004321 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.582322 B = 6477.726522 C = 6707.898603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.568 5.568 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.041 3.959 13 N -0.507 5.507 14 C 0.052 3.948 15 C -0.122 4.122 16 C -0.081 4.081 17 H 0.073 0.927 18 C -0.136 4.136 19 C -0.183 4.183 20 C -0.180 4.180 21 C 0.049 3.951 22 H 0.271 0.729 23 H 0.391 0.609 24 H 0.086 0.914 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 -16.989 -2.262 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.205 5.205 10 C 0.231 3.769 11 O -0.460 6.460 12 C -0.091 4.091 13 N -0.230 5.230 14 C -0.076 4.076 15 C -0.160 4.160 16 C -0.100 4.100 17 H 0.091 0.909 18 C -0.154 4.154 19 C -0.220 4.220 20 C -0.217 4.217 21 C -0.079 4.079 22 H 0.080 0.920 23 H 0.224 0.776 24 H 0.105 0.895 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.207 -16.707 -1.846 16.810 hybrid contribution -0.975 0.740 -0.630 1.377 sum -0.768 -15.967 -2.476 16.176 Atomic orbital electron populations 1.69613 1.05925 1.28045 1.50980 1.25249 0.95623 0.99655 0.97500 0.85866 0.79259 0.80890 0.78323 1.20484 1.20967 1.19412 1.19698 0.93344 0.82262 1.47356 0.87966 1.41866 1.09133 1.04584 1.64891 1.19777 0.88435 0.84536 0.84180 1.90502 1.13696 1.87026 1.54799 1.22110 0.93995 0.91716 1.01274 1.63255 1.25554 1.01203 1.33031 1.23031 1.00358 0.94989 0.89177 1.22795 0.97090 0.95487 1.00633 1.21994 0.98224 0.92386 0.97406 0.90890 1.22257 0.96839 0.92337 1.04002 1.23017 1.04005 0.99297 0.95708 1.22941 0.99765 1.03759 0.95273 1.22896 0.97209 0.89447 0.98310 0.91957 0.77562 0.89533 0.93523 0.94219 0.88902 0.90645 0.91196 0.87645 0.88991 0.89065 0.88932 0.88801 0.90395 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.98 13.05 55.50 0.72 -24.26 16 2 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 3 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.57 -14.76 5.29 -10.96 -0.06 -14.81 16 10 C 0.45 10.88 7.58 -10.98 -0.08 10.79 16 11 O -0.58 -16.01 14.61 5.55 0.08 -15.93 16 12 C 0.04 0.77 5.05 -4.97 -0.03 0.74 16 13 N -0.51 -8.92 4.86 -232.69 -1.13 -10.05 16 14 C 0.05 0.87 5.74 -2.30 -0.01 0.85 16 15 C -0.12 -1.54 6.53 -24.59 -0.16 -1.70 16 16 C -0.08 -0.94 3.12 -88.80 -0.28 -1.21 16 17 H 0.07 0.83 7.96 -51.92 -0.41 0.42 16 18 C -0.14 -1.34 5.11 -90.62 -0.46 -1.80 16 19 C -0.18 -1.57 10.19 -26.69 -0.27 -1.84 16 20 C -0.18 -1.59 9.94 -26.69 -0.27 -1.86 16 21 C 0.05 0.67 6.17 -2.84 -0.02 0.65 16 22 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 23 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 24 H 0.09 1.48 8.03 -51.93 -0.42 1.07 16 25 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 26 H 0.04 0.67 7.62 -51.93 -0.40 0.27 16 27 H 0.09 1.79 7.37 -51.93 -0.38 1.41 16 28 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.11 1.03 7.94 -51.93 -0.41 0.62 16 31 H 0.09 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.05 7.82 -51.93 -0.41 0.64 16 36 H 0.05 0.64 7.55 -51.93 -0.39 0.25 16 LS Contribution 297.37 15.07 4.48 4.48 Total: -1.00 -30.99 297.37 -8.32 -39.31 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.58 Total: 8.41 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.82 Total: -3.48 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.47 Total: -49.12 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.08 Total: -15.93 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.99 -8.32 -39.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344019994.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.641 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds