Wall clock time and date at job start Sun Mar 29 2020 22:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.47839 * 110.99738 * 290.84191 * 13 12 10 15 15 C 1.54908 * 104.79608 * 213.63728 * 14 13 12 16 16 C 1.55139 * 101.65097 * 37.06740 * 15 14 13 17 17 H 1.09008 * 110.70420 * 82.73131 * 16 15 14 18 18 C 1.52999 * 110.85511 * 205.89296 * 16 15 14 19 19 C 1.53001 * 117.49946 * 242.43254 * 18 16 15 20 20 C 1.53004 * 117.49717 * 173.77404 * 18 16 15 21 21 C 1.47437 * 110.99793 * 169.99772 * 13 12 10 22 22 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 24 24 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 25 25 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 26 26 H 1.09004 * 110.37683 * 332.46312 * 14 13 12 27 27 H 1.08996 * 110.37827 * 94.80538 * 14 13 12 28 28 H 1.09004 * 110.99133 * 278.98142 * 15 14 13 29 29 H 1.09001 * 111.02629 * 155.17132 * 15 14 13 30 30 H 1.08994 * 115.55002 * 28.10717 * 18 16 15 31 31 H 1.09000 * 117.49876 * 0.02562 * 19 18 16 32 32 H 1.09004 * 117.49709 * 145.02327 * 19 18 16 33 33 H 1.08995 * 117.49848 * 214.97966 * 20 18 16 34 34 H 1.09000 * 117.50193 * 359.97438 * 20 18 16 35 35 H 1.09004 * 109.89060 * 242.65914 * 21 13 12 36 36 H 1.09004 * 109.89119 * 3.68745 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 2.9170 -6.0562 -1.3154 15 6 3.1555 -7.5693 -1.5460 16 6 1.8438 -8.1818 -0.9884 17 1 1.0519 -8.1430 -1.7364 18 6 2.0710 -9.6199 -0.5181 19 6 1.2934 -10.7277 -1.2316 20 6 0.9129 -10.3215 0.1944 21 6 1.5114 -7.2632 0.2062 22 1 -0.4849 0.8400 0.0004 23 1 0.3535 -2.3907 -0.0068 24 1 0.6169 -4.9255 0.8690 25 1 0.6176 -4.9158 -0.9109 26 1 2.3043 -5.6423 -2.1164 27 1 3.8680 -5.5274 -1.2522 28 1 4.0203 -7.9187 -0.9818 29 1 3.2692 -7.7900 -2.6074 30 1 3.0820 -9.8506 -0.1827 31 1 0.6202 -10.4320 -2.0363 32 1 1.7928 -11.6874 -1.3652 33 1 1.1622 -11.0140 0.9983 34 1 -0.0107 -9.7584 0.3285 35 1 1.8700 -7.7140 1.1316 36 1 0.4349 -7.1023 0.2651 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344019994.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:05 Heat of formation + Delta-G solvation = -31.710895 kcal Electronic energy + Delta-G solvation = -16780.630661 eV Core-core repulsion = 14071.345793 eV Total energy + Delta-G solvation = -2709.284867 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.76522 -39.54186 -37.42572 -35.90319 -33.35909 -32.68131 -29.74324 -28.37283 -26.13850 -23.37701 -23.03255 -22.17586 -21.03052 -20.66220 -19.88061 -17.86289 -17.09514 -16.75562 -16.23057 -16.03250 -15.83824 -15.49635 -14.78525 -14.52125 -14.25284 -13.75340 -13.45550 -13.36980 -12.99954 -12.77313 -12.57672 -12.42456 -12.32619 -12.21460 -12.11542 -11.99437 -11.58209 -11.49021 -10.99037 -10.74927 -10.29328 -10.00946 -9.16968 -8.46557 -5.95374 1.37764 1.41112 1.54321 2.05517 2.28821 2.83929 2.92342 3.19807 3.42185 3.61662 3.75043 3.90311 4.12701 4.20368 4.32008 4.34381 4.40340 4.47041 4.50453 4.59837 4.67888 4.78448 4.86394 5.00986 5.07027 5.10226 5.20698 5.30765 5.33170 5.40624 5.45818 5.90400 6.06447 6.17931 6.61256 7.13096 7.56343 8.12741 8.71088 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.065931 B = 0.004321 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.582322 B = 6477.726522 C = 6707.898603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.616 6.616 12 C 0.054 3.946 13 N -0.531 5.531 14 C 0.050 3.950 15 C -0.111 4.111 16 C -0.069 4.069 17 H 0.080 0.920 18 C -0.147 4.147 19 C -0.174 4.174 20 C -0.179 4.179 21 C 0.049 3.951 22 H 0.278 0.722 23 H 0.396 0.604 24 H 0.107 0.893 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -18.119 -2.469 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.096 0.904 9 N -0.213 5.213 10 C 0.228 3.772 11 O -0.502 6.502 12 C -0.078 4.078 13 N -0.256 5.256 14 C -0.078 4.078 15 C -0.149 4.149 16 C -0.089 4.089 17 H 0.098 0.902 18 C -0.165 4.165 19 C -0.211 4.211 20 C -0.216 4.216 21 C -0.078 4.078 22 H 0.087 0.913 23 H 0.229 0.771 24 H 0.125 0.875 25 H 0.084 0.916 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.743 -17.861 -2.053 17.993 hybrid contribution -0.684 1.062 -0.552 1.378 sum -1.427 -16.799 -2.604 17.059 Atomic orbital electron populations 1.69673 1.06838 1.29288 1.50465 1.26045 0.96558 1.02388 0.96286 0.84922 0.77878 0.76829 0.78666 1.19585 1.19436 1.19815 1.19662 0.92665 0.84045 1.49929 0.90430 1.41932 1.09257 1.04686 1.65439 1.20817 0.88332 0.85955 0.82136 1.90474 1.15751 1.87888 1.56080 1.21970 0.93664 0.89041 1.03095 1.63153 1.26253 1.02534 1.33630 1.22939 0.98445 0.97562 0.88856 1.22735 0.97916 0.92330 1.01957 1.21897 0.97465 0.93007 0.96493 0.90179 1.22159 0.97369 0.91516 1.05483 1.23091 1.03329 0.99113 0.95602 1.23012 0.99118 1.03559 0.95868 1.22957 0.97668 0.87810 0.99326 0.91293 0.77068 0.87495 0.91556 0.94781 0.92630 0.90594 0.89359 0.87635 0.88651 0.87924 0.88053 0.88767 0.90195 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.55 13.05 21.67 0.28 -50.27 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.67 29.55 68.60 2.03 45.69 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.33 -19.44 9.68 84.04 0.81 -18.62 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.58 -30.55 5.29 -306.97 -1.62 -32.18 16 10 C 0.44 21.97 7.58 87.66 0.66 22.64 16 11 O -0.62 -35.55 14.61 -3.07 -0.04 -35.60 16 12 C 0.05 1.99 5.05 85.56 0.43 2.42 16 13 N -0.53 -18.45 4.86 -890.11 -4.33 -22.77 16 14 C 0.05 1.67 5.74 86.77 0.50 2.17 16 15 C -0.11 -2.68 6.53 31.98 0.21 -2.47 16 16 C -0.07 -1.45 3.12 -9.61 -0.03 -1.48 16 17 H 0.08 1.59 7.96 -2.38 -0.02 1.57 16 18 C -0.15 -2.51 5.11 -10.79 -0.06 -2.56 16 19 C -0.17 -2.45 10.19 30.62 0.31 -2.14 16 20 C -0.18 -2.65 9.94 30.62 0.30 -2.34 16 21 C 0.05 1.25 6.17 86.65 0.53 1.79 16 22 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 23 H 0.40 19.90 7.90 -92.71 -0.73 19.16 16 24 H 0.11 3.50 8.03 -2.38 -0.02 3.48 16 25 H 0.07 2.20 7.85 -2.39 -0.02 2.18 16 26 H 0.03 1.16 7.62 -2.39 -0.02 1.14 16 27 H 0.06 2.26 7.37 -2.39 -0.02 2.24 16 28 H 0.08 1.82 7.91 -2.38 -0.02 1.80 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.11 1.82 7.94 -2.39 -0.02 1.80 16 31 H 0.10 1.30 8.07 -2.39 -0.02 1.28 16 32 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 2.00 7.82 -2.39 -0.02 1.98 16 36 H 0.06 1.46 7.55 -2.38 -0.02 1.44 16 Total: -1.00 -67.44 297.37 0.80 -66.65 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.33 Total: 29.34 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 4.15 Total: -0.86 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -5.67 Total: -105.22 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.04 Total: -35.60 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -67.44 0.80 -66.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344019994.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.935 kcal (2) G-P(sol) polarization free energy of solvation -67.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds