Wall clock time and date at job start Sun Mar 29 2020 22:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46866 * 2 1 4 4 N 1.46504 * 109.47093 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99735 * 265.93392 * 4 3 2 6 6 H 1.07994 * 119.99864 * 148.75549 * 5 4 3 7 7 C 1.38813 * 119.99653 * 328.75943 * 5 4 3 8 8 N 1.31616 * 120.00195 * 332.91284 * 7 5 4 9 9 Si 1.86801 * 119.99800 * 152.92259 * 7 5 4 10 10 H 1.48499 * 109.47200 * 84.99546 * 9 7 5 11 11 H 1.48498 * 109.47014 * 204.99146 * 9 7 5 12 12 H 1.48496 * 109.47050 * 324.99149 * 9 7 5 13 13 C 1.46498 * 120.00555 * 85.92869 * 4 3 2 14 14 C 1.50696 * 109.46826 * 90.00039 * 13 4 3 15 15 C 1.35450 * 128.00879 * 259.67987 * 14 13 4 16 16 O 1.34045 * 106.44641 * 179.91452 * 15 14 13 17 17 N 1.20920 * 111.56623 * 0.38318 * 16 15 14 18 18 C 1.30176 * 111.60358 * 359.75897 * 17 16 15 19 19 C 1.50699 * 126.79994 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47223 * 270.02993 * 19 18 17 21 21 H 1.09004 * 109.47283 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47189 * 299.99507 * 1 2 3 23 23 H 1.08995 * 109.47250 * 60.00407 * 1 2 3 24 24 H 1.09002 * 109.46563 * 240.00068 * 2 1 3 25 25 H 1.08999 * 109.47107 * 120.00069 * 2 1 3 26 26 H 1.08994 * 109.47624 * 60.00358 * 3 2 1 27 27 H 1.08999 * 109.47314 * 299.99943 * 3 2 1 28 28 H 0.96995 * 120.00242 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47689 * 210.00481 * 13 4 3 30 30 H 1.09004 * 109.46711 * 330.00686 * 13 4 3 31 31 H 1.07995 * 126.77785 * 0.02562 * 15 14 13 32 32 H 1.09010 * 109.47360 * 30.02734 * 19 18 17 33 33 H 1.09000 * 109.47356 * 150.02561 * 19 18 17 34 34 H 1.08997 * 109.47036 * 180.02562 * 20 19 18 35 35 H 1.09004 * 109.47073 * 299.99491 * 20 19 18 36 36 H 1.08993 * 109.47192 * 59.99916 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5265 1.1821 6 1 5.1527 1.0474 1.2837 7 6 3.6473 2.2273 2.2504 8 7 2.8077 3.2166 2.0299 9 14 4.1088 1.7664 4.0008 10 1 5.3713 2.4519 4.3767 11 1 3.0243 2.1846 4.9250 12 1 4.2975 0.2963 4.0922 13 6 4.2371 1.3527 -1.2664 14 6 4.4880 2.7391 -1.8010 15 6 3.8074 3.3946 -2.7715 16 8 4.3920 4.5939 -2.9010 17 7 5.3244 4.7183 -2.1411 18 6 5.4921 3.6544 -1.4100 19 6 6.5479 3.4404 -0.3562 20 6 7.7914 2.8222 -0.9982 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 2.4281 3.7060 2.7763 29 1 5.1895 0.8493 -1.1004 30 1 3.6476 0.7864 -1.9875 31 1 2.9599 3.0248 -3.3294 32 1 6.8098 4.3974 0.0953 33 1 6.1637 2.7693 0.4120 34 1 8.5548 2.6670 -0.2359 35 1 7.5296 1.8652 -1.4497 36 1 8.1755 3.4933 -1.7663 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350661673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:56 Heat of formation + Delta-G solvation = 62.271546 kcal Electronic energy + Delta-G solvation = -17739.883162 eV Core-core repulsion = 15034.673679 eV Total energy + Delta-G solvation = -2705.209483 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.04939 -36.54096 -34.64844 -32.51954 -32.16705 -30.44077 -30.22776 -26.32484 -25.61750 -23.74180 -22.38530 -20.79914 -20.16978 -19.68874 -16.89228 -16.62773 -16.57177 -14.96962 -14.36830 -14.17298 -13.92215 -13.59883 -13.25337 -13.00854 -12.76690 -12.15305 -12.03858 -11.75608 -11.41745 -11.01239 -10.95324 -10.91243 -10.80109 -10.71056 -10.42829 -10.14393 -9.99232 -9.92012 -9.54986 -9.01567 -8.61695 -8.49203 -6.75339 -5.87180 -3.33541 2.30602 3.11223 3.32073 3.41077 3.44422 4.06596 4.44763 4.97122 5.22047 5.35473 5.48283 5.72678 5.74798 5.80794 5.85246 5.89448 5.91295 6.15765 6.18116 6.34426 6.40394 6.45211 6.49739 6.57575 6.63627 6.69321 6.82595 6.85319 6.86729 7.08171 7.22626 7.70149 7.74037 8.39957 9.08281 9.10119 9.74803 10.30246 11.13614 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.017909 B = 0.010757 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.074710 B = 2602.365555 C = 3543.448806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.145 3.855 4 N -0.572 5.572 5 C -0.260 4.260 6 H 0.066 0.934 7 C 0.013 3.987 8 N -0.876 5.876 9 Si 0.889 3.111 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.210 3.790 14 C -0.179 4.179 15 C -0.094 4.094 16 O 0.078 5.922 17 N -0.387 5.387 18 C 0.049 3.951 19 C -0.053 4.053 20 C -0.139 4.139 21 H 0.040 0.960 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.018 0.982 28 H 0.255 0.745 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.201 0.799 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 -3.737 -6.378 7.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.019 3.981 4 N -0.291 5.291 5 C -0.389 4.389 6 H 0.083 0.917 7 C -0.188 4.188 8 N -0.518 5.518 9 Si 0.718 3.282 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.082 3.918 14 C -0.186 4.186 15 C -0.176 4.176 16 O 0.015 5.985 17 N -0.094 5.094 18 C -0.111 4.111 19 C -0.091 4.091 20 C -0.198 4.198 21 H 0.059 0.941 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.218 0.782 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.707 -2.448 -6.338 7.006 hybrid contribution -0.337 -0.739 1.140 1.400 sum 1.370 -3.188 -5.198 6.250 Atomic orbital electron populations 1.21695 0.97506 0.99975 1.01118 1.22072 0.93689 1.01454 1.00701 1.20998 0.83042 0.92316 1.01766 1.44084 1.01101 1.83625 1.00300 1.18989 1.04563 1.27063 0.88306 0.91676 1.25005 1.00018 0.94910 0.98844 1.70079 1.33411 1.17767 1.30510 0.86544 0.77771 0.78727 0.85202 1.21143 1.21534 1.20326 1.19385 0.96502 0.87392 0.88508 1.22693 0.95988 1.03137 0.96746 1.25503 1.02426 0.86468 1.03240 1.84676 1.33642 1.32861 1.47355 1.73676 1.05698 1.23521 1.06496 1.23315 0.99126 0.89983 0.98651 1.20060 0.91301 1.02610 0.95112 1.21681 0.97045 1.00625 1.00401 0.94101 0.93104 0.93645 0.94061 0.92391 0.88489 0.96311 0.93503 0.92407 0.93235 0.78201 0.91509 0.86916 0.92349 0.92652 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.14 -2.63 6.26 -26.73 -0.17 -2.79 16 3 C 0.14 3.22 5.27 -4.04 -0.02 3.19 16 4 N -0.57 -13.19 2.45 -174.62 -0.43 -13.62 16 5 C -0.26 -6.54 7.76 -15.06 -0.12 -6.66 16 6 H 0.07 1.62 7.65 -52.49 -0.40 1.22 16 7 C 0.01 0.35 4.83 -17.43 -0.08 0.27 16 8 N -0.88 -24.40 11.45 55.49 0.64 -23.77 16 9 Si 0.89 20.71 29.63 -169.99 -5.04 15.67 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.21 4.14 6.17 -5.20 -0.03 4.11 16 14 C -0.18 -3.59 5.91 -104.42 -0.62 -4.21 16 15 C -0.09 -1.69 12.26 29.74 0.36 -1.33 16 16 O 0.08 1.53 11.20 17.16 0.19 1.73 16 17 N -0.39 -8.27 12.07 33.42 0.40 -7.86 16 18 C 0.05 1.02 6.58 -82.10 -0.54 0.48 16 19 C -0.05 -1.03 6.44 -27.88 -0.18 -1.20 16 20 C -0.14 -2.17 9.89 37.16 0.37 -1.80 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.10 2.49 5.33 -51.93 -0.28 2.21 16 27 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 28 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 30 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.20 2.75 8.06 -52.49 -0.42 2.33 16 32 H 0.07 1.30 8.14 -51.92 -0.42 0.87 16 33 H 0.11 2.42 5.93 -51.93 -0.31 2.11 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 302.18 15.07 4.55 4.55 Total: -1.00 -28.55 302.18 -5.94 -34.49 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.61 Total: 0.71 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -0.66 Total: -11.90 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.61 Total: -45.25 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: 0.19 Total: 1.73 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.04 Total: 15.67 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.55 -5.94 -34.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350661673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.764 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds