Wall clock time and date at job start Sun Mar 29 2020 22:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46866 * 2 1 4 4 N 1.46504 * 109.47093 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99735 * 265.93392 * 4 3 2 6 6 H 1.07994 * 119.99864 * 148.75549 * 5 4 3 7 7 C 1.38813 * 119.99653 * 328.75943 * 5 4 3 8 8 N 1.31616 * 120.00195 * 332.91284 * 7 5 4 9 9 Si 1.86801 * 119.99800 * 152.92259 * 7 5 4 10 10 H 1.48499 * 109.47200 * 84.99546 * 9 7 5 11 11 H 1.48498 * 109.47014 * 204.99146 * 9 7 5 12 12 H 1.48496 * 109.47050 * 324.99149 * 9 7 5 13 13 C 1.46498 * 120.00555 * 85.92869 * 4 3 2 14 14 C 1.50696 * 109.46826 * 90.00039 * 13 4 3 15 15 C 1.35450 * 128.00879 * 259.67987 * 14 13 4 16 16 O 1.34045 * 106.44641 * 179.91452 * 15 14 13 17 17 N 1.20920 * 111.56623 * 0.38318 * 16 15 14 18 18 C 1.30176 * 111.60358 * 359.75897 * 17 16 15 19 19 C 1.50699 * 126.79994 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47223 * 270.02993 * 19 18 17 21 21 H 1.09004 * 109.47283 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47189 * 299.99507 * 1 2 3 23 23 H 1.08995 * 109.47250 * 60.00407 * 1 2 3 24 24 H 1.09002 * 109.46563 * 240.00068 * 2 1 3 25 25 H 1.08999 * 109.47107 * 120.00069 * 2 1 3 26 26 H 1.08994 * 109.47624 * 60.00358 * 3 2 1 27 27 H 1.08999 * 109.47314 * 299.99943 * 3 2 1 28 28 H 0.96995 * 120.00242 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47689 * 210.00481 * 13 4 3 30 30 H 1.09004 * 109.46711 * 330.00686 * 13 4 3 31 31 H 1.07995 * 126.77785 * 0.02562 * 15 14 13 32 32 H 1.09010 * 109.47360 * 30.02734 * 19 18 17 33 33 H 1.09000 * 109.47356 * 150.02561 * 19 18 17 34 34 H 1.08997 * 109.47036 * 180.02562 * 20 19 18 35 35 H 1.09004 * 109.47073 * 299.99491 * 20 19 18 36 36 H 1.08993 * 109.47192 * 59.99916 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5265 1.1821 6 1 5.1527 1.0474 1.2837 7 6 3.6473 2.2273 2.2504 8 7 2.8077 3.2166 2.0299 9 14 4.1088 1.7664 4.0008 10 1 5.3713 2.4519 4.3767 11 1 3.0243 2.1846 4.9250 12 1 4.2975 0.2963 4.0922 13 6 4.2371 1.3527 -1.2664 14 6 4.4880 2.7391 -1.8010 15 6 3.8074 3.3946 -2.7715 16 8 4.3920 4.5939 -2.9010 17 7 5.3244 4.7183 -2.1411 18 6 5.4921 3.6544 -1.4100 19 6 6.5479 3.4404 -0.3562 20 6 7.7914 2.8222 -0.9982 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 2.4281 3.7060 2.7763 29 1 5.1895 0.8493 -1.1004 30 1 3.6476 0.7864 -1.9875 31 1 2.9599 3.0248 -3.3294 32 1 6.8098 4.3974 0.0953 33 1 6.1637 2.7693 0.4120 34 1 8.5548 2.6670 -0.2359 35 1 7.5296 1.8652 -1.4497 36 1 8.1755 3.4933 -1.7663 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350661673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:55 Heat of formation + Delta-G solvation = 47.153029 kcal Electronic energy + Delta-G solvation = -17740.538750 eV Core-core repulsion = 15034.673679 eV Total energy + Delta-G solvation = -2705.865071 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.62113 -38.23687 -36.19469 -34.09994 -33.86175 -32.04400 -31.81210 -27.93113 -27.36591 -25.19468 -24.05034 -22.34302 -21.69059 -21.34179 -18.65271 -18.30805 -18.11677 -16.77664 -15.92658 -15.89318 -15.55298 -15.06851 -14.86150 -14.53796 -14.16395 -13.72321 -13.50515 -13.29764 -13.11431 -12.68982 -12.62211 -12.39328 -12.38285 -12.24809 -12.05626 -11.85118 -11.65702 -11.51609 -11.22194 -10.58153 -10.43256 -10.13653 -8.63295 -7.81921 -5.29685 0.81202 1.44526 1.48980 1.53499 1.59124 2.54741 2.64570 3.26913 3.45489 3.80515 3.88653 4.26247 4.34759 4.39056 4.47313 4.53376 4.53657 4.72913 4.76003 4.93037 4.94913 4.98533 5.06790 5.14089 5.18793 5.24369 5.32975 5.33966 5.42381 5.52741 5.61994 5.73500 5.94709 6.46899 7.18913 7.56291 7.90968 8.40400 9.15961 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.017909 B = 0.010757 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.074710 B = 2602.365555 C = 3543.448806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.145 3.855 4 N -0.586 5.586 5 C -0.248 4.248 6 H 0.065 0.935 7 C -0.034 4.034 8 N -0.911 5.911 9 Si 0.938 3.062 10 H -0.286 1.286 11 H -0.299 1.299 12 H -0.271 1.271 13 C 0.212 3.788 14 C -0.206 4.206 15 C -0.071 4.071 16 O 0.077 5.923 17 N -0.411 5.411 18 C 0.030 3.970 19 C -0.052 4.052 20 C -0.128 4.128 21 H 0.064 0.936 22 H 0.037 0.963 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.037 0.963 26 H 0.061 0.939 27 H 0.023 0.977 28 H 0.246 0.754 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.246 0.754 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 -5.096 -7.786 9.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.020 3.980 4 N -0.305 5.305 5 C -0.379 4.379 6 H 0.083 0.917 7 C -0.231 4.231 8 N -0.556 5.556 9 Si 0.767 3.233 10 H -0.212 1.212 11 H -0.225 1.225 12 H -0.196 1.196 13 C 0.086 3.914 14 C -0.213 4.213 15 C -0.153 4.153 16 O 0.015 5.985 17 N -0.119 5.119 18 C -0.129 4.129 19 C -0.091 4.091 20 C -0.186 4.186 21 H 0.083 0.917 22 H 0.056 0.944 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.623 -3.828 -7.762 8.805 hybrid contribution -0.300 -0.326 1.461 1.527 sum 1.322 -4.155 -6.301 7.662 Atomic orbital electron populations 1.21642 0.95299 1.01572 1.01201 1.21903 0.95581 0.98819 1.00485 1.20926 0.82801 0.94111 1.00199 1.44267 1.01584 1.83725 1.00972 1.19183 1.04090 1.25273 0.89309 0.91729 1.25518 1.00835 0.95313 1.01442 1.70203 1.35487 1.19345 1.30537 0.85748 0.76923 0.78566 0.82027 1.21236 1.22523 1.19623 1.19453 0.96760 0.87574 0.87632 1.22781 0.96806 1.03409 0.98290 1.26276 1.02015 0.85038 1.02002 1.84647 1.33331 1.33556 1.46962 1.73668 1.06774 1.24036 1.07432 1.23695 0.99868 0.90349 0.98963 1.20036 0.92654 1.01781 0.94592 1.21603 0.95650 1.00510 1.00841 0.91720 0.94385 0.92252 0.92287 0.94446 0.92067 0.95867 0.94431 0.92169 0.90372 0.73815 0.92499 0.89237 0.90338 0.92086 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 9.91 71.98 0.71 -3.41 16 2 C -0.13 -4.59 6.26 30.59 0.19 -4.40 16 3 C 0.15 6.33 5.27 86.38 0.46 6.78 16 4 N -0.59 -26.46 2.45 -706.36 -1.73 -28.19 16 5 C -0.25 -12.48 7.76 84.03 0.65 -11.83 16 6 H 0.07 3.20 7.65 -2.91 -0.02 3.18 16 7 C -0.03 -1.79 4.83 84.86 0.41 -1.38 16 8 N -0.91 -52.03 11.45 21.65 0.25 -51.78 16 9 Si 0.94 43.24 29.63 68.60 2.03 45.27 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 C 0.21 7.94 6.17 85.63 0.53 8.47 16 14 C -0.21 -7.92 5.91 -19.74 -0.12 -8.04 16 15 C -0.07 -2.37 12.26 67.18 0.82 -1.55 16 16 O 0.08 2.92 11.20 71.59 0.80 3.72 16 17 N -0.41 -17.29 12.07 -49.56 -0.60 -17.89 16 18 C 0.03 1.24 6.58 43.58 0.29 1.53 16 19 C -0.05 -2.03 6.44 29.85 0.19 -1.84 16 20 C -0.13 -3.81 9.89 71.98 0.71 -3.09 16 21 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 22 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 3.18 5.33 -2.39 -0.01 3.17 16 27 H 0.02 0.96 8.10 -2.39 -0.02 0.94 16 28 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 29 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 30 H 0.08 2.45 8.07 -2.38 -0.02 2.43 16 31 H 0.25 5.59 8.06 -2.91 -0.02 5.57 16 32 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.09 3.88 5.93 -2.39 -0.01 3.86 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -61.83 302.18 6.65 -55.18 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.04 Total: 12.44 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 4.85 Total: -18.76 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -2.08 Total: -97.86 kcal Atomic # 8 Polarization: 2.92 SS G_CDS: 0.80 Total: 3.72 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -61.83 6.65 -55.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350661673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.337 kcal (2) G-P(sol) polarization free energy of solvation -61.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds