Wall clock time and date at job start Sun Mar 29 2020 22:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47130 * 2 1 4 4 N 1.30178 * 126.79896 * 270.03087 * 3 2 1 5 5 O 1.20923 * 111.60127 * 179.97438 * 4 3 2 6 6 C 1.34045 * 111.56941 * 359.76072 * 5 4 3 7 7 C 1.35457 * 106.44483 * 0.38024 * 6 5 4 8 8 C 1.50697 * 128.00863 * 179.91212 * 7 6 5 9 9 N 1.46894 * 109.47323 * 259.67936 * 8 7 6 10 10 C 1.46893 * 111.00299 * 185.04748 * 9 8 7 11 11 H 1.09006 * 109.47333 * 325.25433 * 10 9 8 12 12 C 1.50701 * 109.47011 * 85.25119 * 10 9 8 13 13 H 1.08000 * 120.00352 * 359.97438 * 12 10 9 14 14 C 1.37881 * 120.00003 * 179.72585 * 12 10 9 15 15 N 1.31513 * 119.99972 * 0.27647 * 14 12 10 16 16 Si 1.86801 * 120.00204 * 180.27316 * 14 12 10 17 17 H 1.48497 * 109.46850 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46823 * 120.00086 * 16 14 12 19 19 H 1.48496 * 109.47470 * 240.00234 * 16 14 12 20 20 C 1.52997 * 109.47458 * 205.25146 * 10 9 8 21 21 C 1.53001 * 109.47237 * 65.64135 * 20 10 9 22 22 H 1.08999 * 109.46636 * 299.99582 * 1 2 3 23 23 H 1.08996 * 109.47174 * 60.00014 * 1 2 3 24 24 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47295 * 240.00068 * 2 1 3 26 26 H 1.08998 * 109.47606 * 119.99694 * 2 1 3 27 27 H 1.08002 * 126.78429 * 180.28821 * 6 5 4 28 28 H 1.09004 * 109.46981 * 139.67560 * 8 7 6 29 29 H 1.09002 * 109.47063 * 19.67877 * 8 7 6 30 30 H 1.00905 * 111.00343 * 61.09411 * 9 8 7 31 31 H 0.96999 * 120.00100 * 179.97438 * 15 14 12 32 32 H 1.09002 * 109.47262 * 185.63999 * 20 10 9 33 33 H 1.08997 * 109.47429 * 305.64271 * 20 10 9 34 34 H 1.08995 * 109.47400 * 174.41767 * 21 20 10 35 35 H 1.09004 * 109.46985 * 294.42220 * 21 20 10 36 36 H 1.09005 * 109.46891 * 54.41694 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2917 2.1562 -1.0424 5 8 2.6804 3.2565 -0.7254 6 6 2.7254 3.3984 0.6068 7 6 2.3146 2.2194 1.1321 8 6 2.1827 1.8472 2.5864 9 7 3.3483 1.0526 2.9961 10 6 3.1980 0.5701 4.3754 11 1 2.6711 1.3188 4.9669 12 6 2.4107 -0.7149 4.3750 13 1 2.0569 -1.1313 3.4434 14 6 2.1463 -1.3618 5.5637 15 7 2.5766 -0.8546 6.6982 16 14 1.1769 -2.9586 5.5626 17 1 0.8111 -3.3145 4.1681 18 1 2.0070 -4.0419 6.1480 19 1 -0.0573 -2.7890 6.3707 20 6 4.5803 0.3210 4.9821 21 6 5.3272 1.6500 5.1121 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.0305 4.2785 1.1535 28 1 1.2748 1.2615 2.7306 29 1 2.1303 2.7532 3.1900 30 1 4.2016 1.5803 2.8887 31 1 2.3903 -1.3094 7.5344 32 1 4.4684 -0.1308 5.9678 33 1 5.1449 -0.3513 4.3362 34 1 6.2701 1.4874 5.6341 35 1 5.5263 2.0535 4.1193 36 1 4.7170 2.3561 5.6756 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352917817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:36 Heat of formation + Delta-G solvation = 43.578351 kcal Electronic energy + Delta-G solvation = -17272.156235 eV Core-core repulsion = 14566.136155 eV Total energy + Delta-G solvation = -2706.020081 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.60545 -36.75594 -35.15390 -33.05969 -31.78047 -30.79390 -30.42763 -26.96710 -25.00416 -24.08678 -22.64039 -20.84655 -20.57415 -19.60022 -17.27120 -17.05856 -16.33091 -15.15896 -14.80175 -14.22794 -14.09928 -13.86683 -13.25011 -13.13015 -12.67621 -12.39974 -12.28743 -11.85981 -11.52905 -11.31759 -11.17704 -11.07994 -10.87943 -10.62613 -10.50116 -10.00012 -9.85556 -9.69745 -9.51026 -9.21161 -9.02134 -8.38579 -7.30777 -6.00599 -4.04854 1.77580 2.55664 3.28832 3.37426 3.41657 3.54046 4.41676 4.47231 4.86747 5.24419 5.26879 5.33375 5.49056 5.57121 5.60420 5.74706 5.91952 6.09735 6.11349 6.12354 6.19563 6.26327 6.36215 6.37614 6.47514 6.60974 6.80275 7.02790 7.13221 7.42913 7.73640 7.87667 8.22104 8.34241 8.56897 8.68510 9.03066 9.60424 11.04805 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.007769 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.281369 B = 3603.042762 C = 4628.863529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.043 3.957 4 N -0.378 5.378 5 O 0.087 5.913 6 C -0.077 4.077 7 C -0.173 4.173 8 C 0.139 3.861 9 N -0.680 5.680 10 C 0.219 3.781 11 H 0.003 0.997 12 C -0.492 4.492 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.126 4.126 21 C -0.150 4.150 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.210 0.790 28 H 0.089 0.911 29 H 0.028 0.972 30 H 0.318 0.682 31 H 0.259 0.741 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.402 6.206 -8.118 10.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 C -0.116 4.116 4 N -0.085 5.085 5 O 0.024 5.976 6 C -0.159 4.159 7 C -0.178 4.178 8 C 0.009 3.991 9 N -0.312 5.312 10 C 0.112 3.888 11 H 0.020 0.980 12 C -0.531 4.531 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.213 1.213 20 C -0.164 4.164 21 C -0.208 4.208 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.123 0.877 27 H 0.227 0.773 28 H 0.107 0.893 29 H 0.046 0.954 30 H 0.135 0.865 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.712 5.386 -9.515 10.956 hybrid contribution -0.264 0.028 1.551 1.573 sum -0.976 5.414 -7.964 9.680 Atomic orbital electron populations 1.21682 0.94470 1.02106 1.01804 1.19990 0.95897 0.88338 1.04490 1.23495 1.00906 0.99058 0.88124 1.73778 1.17223 0.92991 1.24492 1.84754 1.62928 1.26882 1.23061 1.25723 1.05069 1.01413 0.83694 1.21572 1.04633 0.93028 0.98525 1.20081 0.97338 0.95872 0.85797 1.60668 1.01947 1.40127 1.28451 1.19183 0.93092 0.94971 0.81555 0.97965 1.21229 1.32375 1.06752 0.92759 0.91932 1.24956 0.96205 0.97736 0.95618 1.69874 1.46530 1.39522 0.97651 0.86519 0.79672 0.83633 0.78065 1.19698 1.21154 1.21251 1.21767 0.95859 0.94560 1.04231 1.21883 0.99580 1.00069 0.99229 0.92174 0.93217 0.91827 0.90908 0.87716 0.77337 0.89317 0.95384 0.86480 0.93109 0.88145 0.94014 0.94357 0.94656 0.93879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.89 37.16 0.37 -1.59 16 2 C -0.05 -0.76 6.44 -27.88 -0.18 -0.94 16 3 C 0.04 0.72 6.58 -82.10 -0.54 0.18 16 4 N -0.38 -6.32 12.07 33.42 0.40 -5.92 16 5 O 0.09 1.30 11.20 17.16 0.19 1.50 16 6 C -0.08 -1.02 12.26 29.74 0.36 -0.66 16 7 C -0.17 -2.77 5.88 -104.42 -0.61 -3.38 16 8 C 0.14 2.47 5.94 -4.98 -0.03 2.44 16 9 N -0.68 -13.61 6.26 -109.23 -0.68 -14.30 16 10 C 0.22 5.16 2.02 -68.87 -0.14 5.02 16 11 H 0.00 0.07 7.85 -51.93 -0.41 -0.34 16 12 C -0.49 -12.92 8.56 -34.44 -0.29 -13.22 16 13 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 14 C 0.06 1.48 5.29 -17.82 -0.09 1.38 16 15 N -0.90 -24.74 11.28 55.43 0.63 -24.12 16 16 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.13 -2.85 5.36 -26.73 -0.14 -2.99 16 21 C -0.15 -2.79 9.65 37.16 0.36 -2.43 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 27 H 0.21 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.09 1.72 7.93 -51.93 -0.41 1.31 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.32 5.91 6.64 -39.29 -0.26 5.65 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.10 2.58 5.93 -51.93 -0.31 2.27 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.03 0.58 6.65 -51.93 -0.35 0.24 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 301.99 15.07 4.55 4.55 Total: -1.00 -28.08 301.99 -6.38 -34.46 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.51 Total: 4.15 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -0.94 Total: -16.18 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.35 Total: -44.33 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.19 Total: 1.50 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.08 -6.38 -34.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352917817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.042 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds