Wall clock time and date at job start Sun Mar 29 2020 22:18:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50705 * 109.47130 * 2 1
4 4 N 1.30178 * 126.79896 * 270.03087 * 3 2 1
5 5 O 1.20923 * 111.60127 * 179.97438 * 4 3 2
6 6 C 1.34045 * 111.56941 * 359.76072 * 5 4 3
7 7 C 1.35457 * 106.44483 * 0.38024 * 6 5 4
8 8 C 1.50697 * 128.00863 * 179.91212 * 7 6 5
9 9 N 1.46894 * 109.47323 * 259.67936 * 8 7 6
10 10 C 1.46893 * 111.00299 * 185.04748 * 9 8 7
11 11 H 1.09006 * 109.47333 * 325.25433 * 10 9 8
12 12 C 1.50701 * 109.47011 * 85.25119 * 10 9 8
13 13 H 1.08000 * 120.00352 * 359.97438 * 12 10 9
14 14 C 1.37881 * 120.00003 * 179.72585 * 12 10 9
15 15 N 1.31513 * 119.99972 * 0.27647 * 14 12 10
16 16 Si 1.86801 * 120.00204 * 180.27316 * 14 12 10
17 17 H 1.48497 * 109.46850 * 0.02562 * 16 14 12
18 18 H 1.48503 * 109.46823 * 120.00086 * 16 14 12
19 19 H 1.48496 * 109.47470 * 240.00234 * 16 14 12
20 20 C 1.52997 * 109.47458 * 205.25146 * 10 9 8
21 21 C 1.53001 * 109.47237 * 65.64135 * 20 10 9
22 22 H 1.08999 * 109.46636 * 299.99582 * 1 2 3
23 23 H 1.08996 * 109.47174 * 60.00014 * 1 2 3
24 24 H 1.08997 * 109.47048 * 180.02562 * 1 2 3
25 25 H 1.08998 * 109.47295 * 240.00068 * 2 1 3
26 26 H 1.08998 * 109.47606 * 119.99694 * 2 1 3
27 27 H 1.08002 * 126.78429 * 180.28821 * 6 5 4
28 28 H 1.09004 * 109.46981 * 139.67560 * 8 7 6
29 29 H 1.09002 * 109.47063 * 19.67877 * 8 7 6
30 30 H 1.00905 * 111.00343 * 61.09411 * 9 8 7
31 31 H 0.96999 * 120.00100 * 179.97438 * 15 14 12
32 32 H 1.09002 * 109.47262 * 185.63999 * 20 10 9
33 33 H 1.08997 * 109.47429 * 305.64271 * 20 10 9
34 34 H 1.08995 * 109.47400 * 174.41767 * 21 20 10
35 35 H 1.09004 * 109.46985 * 294.42220 * 21 20 10
36 36 H 1.09005 * 109.46891 * 54.41694 * 21 20 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.2917 2.1562 -1.0424
5 8 2.6804 3.2565 -0.7254
6 6 2.7254 3.3984 0.6068
7 6 2.3146 2.2194 1.1321
8 6 2.1827 1.8472 2.5864
9 7 3.3483 1.0526 2.9961
10 6 3.1980 0.5701 4.3754
11 1 2.6711 1.3188 4.9669
12 6 2.4107 -0.7149 4.3750
13 1 2.0569 -1.1313 3.4434
14 6 2.1463 -1.3618 5.5637
15 7 2.5766 -0.8546 6.6982
16 14 1.1769 -2.9586 5.5626
17 1 0.8111 -3.3145 4.1681
18 1 2.0070 -4.0419 6.1480
19 1 -0.0573 -2.7890 6.3707
20 6 4.5803 0.3210 4.9821
21 6 5.3272 1.6500 5.1121
22 1 -0.3632 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0276 0.0005
25 1 1.8933 -0.5138 -0.8900
26 1 1.8934 -0.5138 0.8900
27 1 3.0305 4.2785 1.1535
28 1 1.2748 1.2615 2.7306
29 1 2.1303 2.7532 3.1900
30 1 4.2016 1.5803 2.8887
31 1 2.3903 -1.3094 7.5344
32 1 4.4684 -0.1308 5.9678
33 1 5.1449 -0.3513 4.3362
34 1 6.2701 1.4874 5.6341
35 1 5.5263 2.0535 4.1193
36 1 4.7170 2.3561 5.6756
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000352917817.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:18:36
Heat of formation + Delta-G solvation = 43.578351 kcal
Electronic energy + Delta-G solvation = -17272.156235 eV
Core-core repulsion = 14566.136155 eV
Total energy + Delta-G solvation = -2706.020081 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 238.142 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-44.60545 -36.75594 -35.15390 -33.05969 -31.78047 -30.79390 -30.42763 -26.96710
-25.00416 -24.08678 -22.64039 -20.84655 -20.57415 -19.60022 -17.27120 -17.05856
-16.33091 -15.15896 -14.80175 -14.22794 -14.09928 -13.86683 -13.25011 -13.13015
-12.67621 -12.39974 -12.28743 -11.85981 -11.52905 -11.31759 -11.17704 -11.07994
-10.87943 -10.62613 -10.50116 -10.00012 -9.85556 -9.69745 -9.51026 -9.21161
-9.02134 -8.38579 -7.30777 -6.00599 -4.04854 1.77580 2.55664 3.28832
3.37426 3.41657 3.54046 4.41676 4.47231 4.86747 5.24419 5.26879
5.33375 5.49056 5.57121 5.60420 5.74706 5.91952 6.09735 6.11349
6.12354 6.19563 6.26327 6.36215 6.37614 6.47514 6.60974 6.80275
7.02790 7.13221 7.42913 7.73640 7.87667 8.22104 8.34241 8.56897
8.68510 9.03066 9.60424 11.04805
Molecular weight = 238.14amu
Principal moments of inertia in cm(-1)
A = 0.022390 B = 0.007769 C = 0.006048
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1250.281369 B = 3603.042762 C = 4628.863529
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.049 4.049
3 C 0.043 3.957
4 N -0.378 5.378
5 O 0.087 5.913
6 C -0.077 4.077
7 C -0.173 4.173
8 C 0.139 3.861
9 N -0.680 5.680
10 C 0.219 3.781
11 H 0.003 0.997
12 C -0.492 4.492
13 H 0.062 0.938
14 C 0.055 3.945
15 N -0.896 5.896
16 Si 0.893 3.107
17 H -0.272 1.272
18 H -0.285 1.285
19 H -0.286 1.286
20 C -0.126 4.126
21 C -0.150 4.150
22 H 0.059 0.941
23 H 0.049 0.951
24 H 0.063 0.937
25 H 0.072 0.928
26 H 0.104 0.896
27 H 0.210 0.790
28 H 0.089 0.911
29 H 0.028 0.972
30 H 0.318 0.682
31 H 0.259 0.741
32 H 0.100 0.900
33 H 0.041 0.959
34 H 0.037 0.963
35 H 0.034 0.966
36 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.402 6.206 -8.118 10.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.087 4.087
3 C -0.116 4.116
4 N -0.085 5.085
5 O 0.024 5.976
6 C -0.159 4.159
7 C -0.178 4.178
8 C 0.009 3.991
9 N -0.312 5.312
10 C 0.112 3.888
11 H 0.020 0.980
12 C -0.531 4.531
13 H 0.081 0.919
14 C -0.145 4.145
15 N -0.536 5.536
16 Si 0.721 3.279
17 H -0.197 1.197
18 H -0.212 1.212
19 H -0.213 1.213
20 C -0.164 4.164
21 C -0.208 4.208
22 H 0.078 0.922
23 H 0.068 0.932
24 H 0.082 0.918
25 H 0.091 0.909
26 H 0.123 0.877
27 H 0.227 0.773
28 H 0.107 0.893
29 H 0.046 0.954
30 H 0.135 0.865
31 H 0.069 0.931
32 H 0.119 0.881
33 H 0.060 0.940
34 H 0.056 0.944
35 H 0.053 0.947
36 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -0.712 5.386 -9.515 10.956
hybrid contribution -0.264 0.028 1.551 1.573
sum -0.976 5.414 -7.964 9.680
Atomic orbital electron populations
1.21682 0.94470 1.02106 1.01804 1.19990 0.95897 0.88338 1.04490
1.23495 1.00906 0.99058 0.88124 1.73778 1.17223 0.92991 1.24492
1.84754 1.62928 1.26882 1.23061 1.25723 1.05069 1.01413 0.83694
1.21572 1.04633 0.93028 0.98525 1.20081 0.97338 0.95872 0.85797
1.60668 1.01947 1.40127 1.28451 1.19183 0.93092 0.94971 0.81555
0.97965 1.21229 1.32375 1.06752 0.92759 0.91932 1.24956 0.96205
0.97736 0.95618 1.69874 1.46530 1.39522 0.97651 0.86519 0.79672
0.83633 0.78065 1.19698 1.21154 1.21251 1.21767 0.95859 0.94560
1.04231 1.21883 0.99580 1.00069 0.99229 0.92174 0.93217 0.91827
0.90908 0.87716 0.77337 0.89317 0.95384 0.86480 0.93109 0.88145
0.94014 0.94357 0.94656 0.93879
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.95 9.89 37.16 0.37 -1.59 16
2 C -0.05 -0.76 6.44 -27.88 -0.18 -0.94 16
3 C 0.04 0.72 6.58 -82.10 -0.54 0.18 16
4 N -0.38 -6.32 12.07 33.42 0.40 -5.92 16
5 O 0.09 1.30 11.20 17.16 0.19 1.50 16
6 C -0.08 -1.02 12.26 29.74 0.36 -0.66 16
7 C -0.17 -2.77 5.88 -104.42 -0.61 -3.38 16
8 C 0.14 2.47 5.94 -4.98 -0.03 2.44 16
9 N -0.68 -13.61 6.26 -109.23 -0.68 -14.30 16
10 C 0.22 5.16 2.02 -68.87 -0.14 5.02 16
11 H 0.00 0.07 7.85 -51.93 -0.41 -0.34 16
12 C -0.49 -12.92 8.56 -34.44 -0.29 -13.22 16
13 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16
14 C 0.06 1.48 5.29 -17.82 -0.09 1.38 16
15 N -0.90 -24.74 11.28 55.43 0.63 -24.12 16
16 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16
17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
20 C -0.13 -2.85 5.36 -26.73 -0.14 -2.99 16
21 C -0.15 -2.79 9.65 37.16 0.36 -2.43 16
22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
26 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16
27 H 0.21 1.91 8.06 -52.49 -0.42 1.49 16
28 H 0.09 1.72 7.93 -51.93 -0.41 1.31 16
29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
30 H 0.32 5.91 6.64 -39.29 -0.26 5.65 16
31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16
32 H 0.10 2.58 5.93 -51.93 -0.31 2.27 16
33 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16
34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
35 H 0.03 0.58 6.65 -51.93 -0.35 0.24 16
36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16
LS Contribution 301.99 15.07 4.55 4.55
Total: -1.00 -28.08 301.99 -6.38 -34.46
By element:
Atomic # 1 Polarization: 9.66 SS G_CDS: -5.51 Total: 4.15 kcal
Atomic # 6 Polarization: -15.24 SS G_CDS: -0.94 Total: -16.18 kcal
Atomic # 7 Polarization: -44.68 SS G_CDS: 0.35 Total: -44.33 kcal
Atomic # 8 Polarization: 1.30 SS G_CDS: 0.19 Total: 1.50 kcal
Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal
Total LS contribution 4.55 Total: 4.55 kcal
Total: -28.08 -6.38 -34.46 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000352917817.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.042 kcal
(2) G-P(sol) polarization free energy of solvation -28.082 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.961 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.464 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.578 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds