Wall clock time and date at job start Sun Mar 29 2020 22:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47130 * 2 1 4 4 N 1.30178 * 126.79896 * 270.03087 * 3 2 1 5 5 O 1.20923 * 111.60127 * 179.97438 * 4 3 2 6 6 C 1.34045 * 111.56941 * 359.76072 * 5 4 3 7 7 C 1.35457 * 106.44483 * 0.38024 * 6 5 4 8 8 C 1.50697 * 128.00863 * 179.91212 * 7 6 5 9 9 N 1.46894 * 109.47323 * 259.67936 * 8 7 6 10 10 C 1.46893 * 111.00299 * 185.04748 * 9 8 7 11 11 H 1.09006 * 109.47333 * 325.25433 * 10 9 8 12 12 C 1.50701 * 109.47011 * 85.25119 * 10 9 8 13 13 H 1.08000 * 120.00352 * 359.97438 * 12 10 9 14 14 C 1.37881 * 120.00003 * 179.72585 * 12 10 9 15 15 N 1.31513 * 119.99972 * 0.27647 * 14 12 10 16 16 Si 1.86801 * 120.00204 * 180.27316 * 14 12 10 17 17 H 1.48497 * 109.46850 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46823 * 120.00086 * 16 14 12 19 19 H 1.48496 * 109.47470 * 240.00234 * 16 14 12 20 20 C 1.52997 * 109.47458 * 205.25146 * 10 9 8 21 21 C 1.53001 * 109.47237 * 65.64135 * 20 10 9 22 22 H 1.08999 * 109.46636 * 299.99582 * 1 2 3 23 23 H 1.08996 * 109.47174 * 60.00014 * 1 2 3 24 24 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47295 * 240.00068 * 2 1 3 26 26 H 1.08998 * 109.47606 * 119.99694 * 2 1 3 27 27 H 1.08002 * 126.78429 * 180.28821 * 6 5 4 28 28 H 1.09004 * 109.46981 * 139.67560 * 8 7 6 29 29 H 1.09002 * 109.47063 * 19.67877 * 8 7 6 30 30 H 1.00905 * 111.00343 * 61.09411 * 9 8 7 31 31 H 0.96999 * 120.00100 * 179.97438 * 15 14 12 32 32 H 1.09002 * 109.47262 * 185.63999 * 20 10 9 33 33 H 1.08997 * 109.47429 * 305.64271 * 20 10 9 34 34 H 1.08995 * 109.47400 * 174.41767 * 21 20 10 35 35 H 1.09004 * 109.46985 * 294.42220 * 21 20 10 36 36 H 1.09005 * 109.46891 * 54.41694 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2917 2.1562 -1.0424 5 8 2.6804 3.2565 -0.7254 6 6 2.7254 3.3984 0.6068 7 6 2.3146 2.2194 1.1321 8 6 2.1827 1.8472 2.5864 9 7 3.3483 1.0526 2.9961 10 6 3.1980 0.5701 4.3754 11 1 2.6711 1.3188 4.9669 12 6 2.4107 -0.7149 4.3750 13 1 2.0569 -1.1313 3.4434 14 6 2.1463 -1.3618 5.5637 15 7 2.5766 -0.8546 6.6982 16 14 1.1769 -2.9586 5.5626 17 1 0.8111 -3.3145 4.1681 18 1 2.0070 -4.0419 6.1480 19 1 -0.0573 -2.7890 6.3707 20 6 4.5803 0.3210 4.9821 21 6 5.3272 1.6500 5.1121 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.0305 4.2785 1.1535 28 1 1.2748 1.2615 2.7306 29 1 2.1303 2.7532 3.1900 30 1 4.2016 1.5803 2.8887 31 1 2.3903 -1.3094 7.5344 32 1 4.4684 -0.1308 5.9678 33 1 5.1449 -0.3513 4.3362 34 1 6.2701 1.4874 5.6341 35 1 5.5263 2.0535 4.1193 36 1 4.7170 2.3561 5.6756 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352917817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:35 Heat of formation + Delta-G solvation = 26.534376 kcal Electronic energy + Delta-G solvation = -17272.895317 eV Core-core repulsion = 14566.136155 eV Total energy + Delta-G solvation = -2706.759163 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.82810 -38.38309 -36.51325 -34.64966 -33.51736 -32.02927 -31.85982 -28.74591 -26.60310 -25.29814 -24.36235 -22.16632 -21.75119 -21.41422 -18.51335 -18.31782 -18.26546 -16.78209 -16.46035 -15.73694 -15.56386 -15.31591 -14.77670 -14.39964 -14.20407 -13.93384 -13.54694 -13.40754 -13.18248 -12.87163 -12.70641 -12.49980 -12.45886 -12.35142 -11.94443 -11.75925 -11.54796 -11.45880 -11.01854 -10.74660 -10.40616 -10.33179 -8.98423 -8.03999 -6.14762 0.64283 1.29918 1.41373 1.44898 1.55320 2.45603 2.46704 3.21079 3.25156 3.67982 3.85183 4.03110 4.24845 4.39351 4.41308 4.50378 4.53879 4.60364 4.71505 4.79416 4.84365 4.94108 5.02523 5.12676 5.13884 5.22147 5.27536 5.35540 5.40842 5.62479 5.78774 5.92901 6.38918 6.51467 6.98495 7.00730 7.40082 7.54126 8.99264 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.007769 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.281369 B = 3603.042762 C = 4628.863529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 C 0.030 3.970 4 N -0.396 5.396 5 O 0.092 5.908 6 C -0.042 4.042 7 C -0.202 4.202 8 C 0.149 3.851 9 N -0.682 5.682 10 C 0.227 3.773 11 H -0.025 1.025 12 C -0.505 4.505 13 H 0.052 0.948 14 C 0.011 3.989 15 N -0.920 5.920 16 Si 0.949 3.051 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.122 4.122 21 C -0.139 4.139 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.256 0.744 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.329 0.671 31 H 0.259 0.741 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 7.244 -8.999 11.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 C -0.129 4.129 4 N -0.103 5.103 5 O 0.029 5.971 6 C -0.124 4.124 7 C -0.206 4.206 8 C 0.019 3.981 9 N -0.314 5.314 10 C 0.119 3.881 11 H -0.007 1.007 12 C -0.544 4.544 13 H 0.070 0.930 14 C -0.187 4.187 15 N -0.561 5.561 16 Si 0.775 3.225 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.161 4.161 21 C -0.196 4.196 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.272 0.728 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.147 0.853 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.397 6.429 -10.420 12.250 hybrid contribution -0.347 -0.236 1.793 1.842 sum -0.744 6.194 -8.627 10.646 Atomic orbital electron populations 1.21636 0.93238 1.02910 1.01655 1.19946 0.96990 0.88105 1.03589 1.23690 1.01133 0.99507 0.88557 1.73779 1.18208 0.93605 1.24725 1.84740 1.62340 1.26194 1.23852 1.26438 1.01571 1.01534 0.82817 1.21384 1.07483 0.94498 0.97264 1.19869 0.95316 0.95541 0.87349 1.60512 1.03366 1.41448 1.26054 1.18928 0.92905 0.93217 0.83066 1.00727 1.21503 1.32669 1.07887 0.92336 0.92957 1.25620 0.97181 1.00496 0.95434 1.69994 1.47442 1.40644 0.97975 0.85642 0.78439 0.80297 0.78086 1.19270 1.20997 1.20934 1.21597 0.95862 0.96609 1.01999 1.21747 0.99564 0.97450 1.00871 0.93134 0.92420 0.90593 0.90164 0.90111 0.72803 0.91795 0.94009 0.85262 0.93188 0.91399 0.94765 0.92724 0.92276 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.89 71.98 0.71 -2.96 16 2 C -0.05 -1.48 6.44 29.85 0.19 -1.29 16 3 C 0.03 0.96 6.58 43.58 0.29 1.25 16 4 N -0.40 -12.58 12.07 -49.55 -0.60 -13.17 16 5 O 0.09 2.48 11.20 71.59 0.80 3.29 16 6 C -0.04 -0.97 12.26 67.18 0.82 -0.14 16 7 C -0.20 -6.10 5.88 -19.73 -0.12 -6.22 16 8 C 0.15 5.19 5.94 85.56 0.51 5.69 16 9 N -0.68 -26.91 6.26 -499.48 -3.12 -30.04 16 10 C 0.23 10.78 2.02 44.17 0.09 10.87 16 11 H -0.02 -1.30 7.85 -2.38 -0.02 -1.32 16 12 C -0.51 -27.01 8.56 25.60 0.22 -26.79 16 13 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 14 C 0.01 0.58 5.29 84.66 0.45 1.02 16 15 N -0.92 -51.69 11.28 21.45 0.24 -51.44 16 16 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 C -0.12 -5.54 5.36 30.59 0.16 -5.37 16 21 C -0.14 -4.91 9.65 71.98 0.69 -4.21 16 22 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.26 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.06 2.53 7.93 -2.38 -0.02 2.51 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.33 11.63 6.64 -89.69 -0.60 11.04 16 31 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.07 3.55 5.93 -2.39 -0.01 3.53 16 33 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.79 6.65 -2.39 -0.02 1.78 16 36 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -60.88 301.99 3.84 -57.04 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.47 Total: 17.19 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.02 Total: -28.15 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -3.48 Total: -94.65 kcal Atomic # 8 Polarization: 2.48 SS G_CDS: 0.80 Total: 3.29 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -60.88 3.84 -57.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352917817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.577 kcal (2) G-P(sol) polarization free energy of solvation -60.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds