Wall clock time and date at job start Sun Mar 29 2020 22:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52997 * 112.93508 * 48.43566 * 3 2 1 5 5 C 1.53929 * 113.73478 * 276.72953 * 3 2 1 6 6 N 1.47957 * 86.18223 * 221.92205 * 5 3 2 7 7 C 1.46900 * 111.00525 * 137.57907 * 6 5 3 8 8 C 1.53007 * 109.46596 * 70.64189 * 7 6 5 9 9 H 1.08992 * 109.47317 * 55.00381 * 8 7 6 10 10 C 1.47202 * 109.47149 * 294.99847 * 8 7 6 11 11 N 5.04762 * 94.43594 * 302.32997 * 2 1 3 12 12 C 1.53002 * 109.46963 * 175.00154 * 8 7 6 13 13 C 1.50700 * 109.46962 * 184.99900 * 12 8 7 14 14 H 1.08001 * 120.00071 * 0.02562 * 13 12 8 15 15 C 1.37879 * 119.99614 * 180.02562 * 13 12 8 16 16 N 1.31509 * 120.00546 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99647 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47402 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47409 * 119.99994 * 17 15 13 20 20 H 1.48502 * 109.47238 * 239.99990 * 17 15 13 21 21 C 1.47969 * 90.76237 * 24.68959 * 6 5 3 22 22 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 24 24 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 25 25 H 1.09007 * 109.47081 * 69.67081 * 4 3 2 26 26 H 1.09002 * 109.46947 * 189.66529 * 4 3 2 27 27 H 1.08997 * 109.47607 * 309.66116 * 4 3 2 28 28 H 1.09003 * 113.75828 * 336.23976 * 5 3 2 29 29 H 1.08997 * 113.76032 * 107.60510 * 5 3 2 30 30 H 1.08994 * 109.47527 * 190.63678 * 7 6 5 31 31 H 1.09002 * 109.47252 * 310.64636 * 7 6 5 32 32 H 1.09000 * 109.47043 * 305.00218 * 12 8 7 33 33 H 1.08999 * 109.47099 * 64.99747 * 12 8 7 34 34 H 0.96991 * 120.00346 * 180.02562 * 16 15 13 35 35 H 1.09002 * 113.75573 * 220.99457 * 21 6 5 36 36 H 1.08999 * 113.75379 * 89.63254 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.3986 2.2304 1.0542 5 6 2.1113 1.9387 -1.3994 6 7 3.4560 2.3973 -0.9863 7 6 4.4304 2.2158 -2.0706 8 6 4.1416 3.2193 -3.1890 9 1 4.1319 4.2287 -2.7779 10 6 2.8309 2.9213 -3.7892 11 7 1.8194 2.6914 -4.2524 12 6 5.2287 3.1155 -4.2605 13 6 5.0135 4.1855 -5.2997 14 1 4.1846 4.8713 -5.2050 15 6 5.8750 4.2889 -6.3712 16 7 6.8841 3.4536 -6.4868 17 14 5.6087 5.6157 -7.6589 18 1 4.4125 6.4197 -7.3013 19 1 6.8011 6.4991 -7.7135 20 1 5.4003 4.9828 -8.9861 21 6 3.5495 1.2983 0.0000 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.6941 1.8939 2.0481 26 1 1.7542 3.2484 0.8947 27 1 0.3121 2.2080 0.9710 28 1 2.1256 1.2109 -2.2107 29 1 1.4028 2.7499 -1.5666 30 1 5.4368 2.3803 -1.6860 31 1 4.3525 1.2019 -2.4632 32 1 6.2073 3.2484 -3.7993 33 1 5.1802 2.1347 -4.7335 34 1 7.4903 3.5266 -7.2404 35 1 3.9901 1.5980 0.9509 36 1 3.9845 0.3833 -0.4021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353049141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:27 Heat of formation + Delta-G solvation = 9.794764 kcal Electronic energy + Delta-G solvation = -17034.124256 eV Core-core repulsion = 14326.639210 eV Total energy + Delta-G solvation = -2707.485047 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.59808 -37.36703 -35.94107 -33.89560 -32.27780 -30.16394 -27.74834 -26.80802 -26.22290 -24.57947 -22.01251 -21.70523 -19.24126 -17.38546 -16.55330 -16.26726 -15.75254 -15.62103 -14.81405 -14.46982 -14.16882 -13.83522 -13.35439 -13.05907 -12.85626 -12.54974 -12.26008 -12.17510 -11.96000 -11.86937 -11.52364 -11.17778 -11.12911 -10.94345 -10.72932 -10.50290 -10.45123 -10.25197 -9.67813 -9.46192 -9.19920 -8.81744 -8.46520 -6.10319 -4.13488 3.28004 3.36192 3.40743 3.51777 3.56014 3.62587 4.01158 4.32483 4.40443 4.73958 4.79584 4.94282 5.17101 5.22036 5.27912 5.29505 5.43398 5.47421 5.54662 5.60677 5.62437 5.69598 5.82653 5.91256 6.00303 6.08283 6.32913 6.37857 6.53286 7.05499 7.11221 7.42474 7.51729 7.84810 8.22200 8.39864 8.91226 9.52106 11.00671 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046875 B = 0.005082 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.188450 B = 5508.554668 C = 5729.125864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.377 6.377 3 C 0.078 3.922 4 C -0.155 4.155 5 C -0.018 4.018 6 N -0.473 5.473 7 C 0.031 3.969 8 C 0.009 3.991 9 H 0.110 0.890 10 C 0.245 3.755 11 N -0.478 5.478 12 C 0.032 3.968 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.284 1.284 21 C 0.020 3.980 22 H 0.083 0.917 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.097 0.903 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 -4.252 15.123 17.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.037 3.963 4 C -0.212 4.212 5 C -0.147 4.147 6 N -0.196 5.196 7 C -0.099 4.099 8 C -0.013 4.013 9 H 0.128 0.872 10 C -0.071 4.071 11 N -0.155 5.155 12 C -0.007 4.007 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.210 1.210 21 C -0.108 4.108 22 H 0.101 0.899 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.438 -4.130 14.506 17.282 hybrid contribution 0.108 0.192 -1.160 1.181 sum -8.330 -3.939 13.345 16.217 Atomic orbital electron populations 1.22728 0.81421 1.02461 1.00233 1.87955 1.19697 1.27065 1.94757 1.23516 0.94080 0.83535 0.95130 1.22012 1.00804 1.00400 0.97987 1.24703 0.93589 0.99506 0.96938 1.68553 1.02192 1.38300 1.10562 1.22774 0.97610 0.98259 0.91216 1.19267 0.86609 1.00180 0.95274 0.87240 1.29199 0.94030 0.92103 0.91799 1.81024 1.13487 1.10107 1.10859 1.19177 0.91750 0.98291 0.91451 1.21176 1.12325 1.15353 1.07538 0.92473 1.24951 0.95023 0.96057 0.97922 1.69941 1.15547 1.36788 1.30740 0.86535 0.78206 0.81814 0.81527 1.19687 1.20790 1.20993 1.24111 0.93275 0.94756 0.98694 0.89859 0.93671 0.93946 0.91607 0.89907 0.92020 0.90346 0.89423 0.88353 0.93412 0.94172 0.95747 0.92831 0.88454 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.35 101.05 1.05 1.33 16 2 O -0.38 -4.91 10.67 -35.23 -0.38 -5.29 16 3 C 0.08 0.96 1.43 -89.69 -0.13 0.83 16 4 C -0.15 -1.56 8.80 37.16 0.33 -1.24 16 5 C -0.02 -0.27 4.93 -2.77 -0.01 -0.28 16 6 N -0.47 -6.63 6.12 -238.20 -1.46 -8.08 16 7 C 0.03 0.47 4.51 -3.82 -0.02 0.46 16 8 C 0.01 0.16 2.42 -93.40 -0.23 -0.06 16 9 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 10 C 0.25 5.05 10.79 -20.76 -0.22 4.83 16 11 N -0.48 -10.44 18.01 42.16 0.76 -9.68 16 12 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 13 C -0.53 -14.11 8.60 -34.44 -0.30 -14.40 16 14 H 0.06 1.53 7.59 -52.49 -0.40 1.14 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.02 0.24 7.38 -2.76 -0.02 0.22 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.39 6.40 -51.93 -0.33 0.05 16 24 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.86 8.00 -51.93 -0.42 0.45 16 27 H 0.06 0.57 6.27 -51.93 -0.33 0.24 16 28 H 0.08 1.31 6.74 -51.93 -0.35 0.96 16 29 H 0.09 1.34 7.89 -51.93 -0.41 0.93 16 30 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.05 0.75 7.69 -51.93 -0.40 0.35 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.08 0.97 7.79 -51.93 -0.40 0.56 16 LS Contribution 299.80 15.07 4.52 4.52 Total: -1.00 -29.93 299.80 -6.16 -36.09 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -5.55 Total: -2.98 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 0.23 Total: -6.06 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.04 Total: -42.66 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.38 Total: -5.29 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.93 -6.16 -36.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353049141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.889 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds