Wall clock time and date at job start Sun Mar 29 2020 22:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52997 * 112.93508 * 48.43566 * 3 2 1 5 5 C 1.53929 * 113.73478 * 276.72953 * 3 2 1 6 6 N 1.47957 * 86.18223 * 221.92205 * 5 3 2 7 7 C 1.46900 * 111.00525 * 137.57907 * 6 5 3 8 8 C 1.53007 * 109.46596 * 70.64189 * 7 6 5 9 9 H 1.08992 * 109.47317 * 55.00381 * 8 7 6 10 10 C 1.47202 * 109.47149 * 294.99847 * 8 7 6 11 11 N 5.04762 * 94.43594 * 302.32997 * 2 1 3 12 12 C 1.53002 * 109.46963 * 175.00154 * 8 7 6 13 13 C 1.50700 * 109.46962 * 184.99900 * 12 8 7 14 14 H 1.08001 * 120.00071 * 0.02562 * 13 12 8 15 15 C 1.37879 * 119.99614 * 180.02562 * 13 12 8 16 16 N 1.31509 * 120.00546 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99647 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47402 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47409 * 119.99994 * 17 15 13 20 20 H 1.48502 * 109.47238 * 239.99990 * 17 15 13 21 21 C 1.47969 * 90.76237 * 24.68959 * 6 5 3 22 22 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 24 24 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 25 25 H 1.09007 * 109.47081 * 69.67081 * 4 3 2 26 26 H 1.09002 * 109.46947 * 189.66529 * 4 3 2 27 27 H 1.08997 * 109.47607 * 309.66116 * 4 3 2 28 28 H 1.09003 * 113.75828 * 336.23976 * 5 3 2 29 29 H 1.08997 * 113.76032 * 107.60510 * 5 3 2 30 30 H 1.08994 * 109.47527 * 190.63678 * 7 6 5 31 31 H 1.09002 * 109.47252 * 310.64636 * 7 6 5 32 32 H 1.09000 * 109.47043 * 305.00218 * 12 8 7 33 33 H 1.08999 * 109.47099 * 64.99747 * 12 8 7 34 34 H 0.96991 * 120.00346 * 180.02562 * 16 15 13 35 35 H 1.09002 * 113.75573 * 220.99457 * 21 6 5 36 36 H 1.08999 * 113.75379 * 89.63254 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.3986 2.2304 1.0542 5 6 2.1113 1.9387 -1.3994 6 7 3.4560 2.3973 -0.9863 7 6 4.4304 2.2158 -2.0706 8 6 4.1416 3.2193 -3.1890 9 1 4.1319 4.2287 -2.7779 10 6 2.8309 2.9213 -3.7892 11 7 1.8194 2.6914 -4.2524 12 6 5.2287 3.1155 -4.2605 13 6 5.0135 4.1855 -5.2997 14 1 4.1846 4.8713 -5.2050 15 6 5.8750 4.2889 -6.3712 16 7 6.8841 3.4536 -6.4868 17 14 5.6087 5.6157 -7.6589 18 1 4.4125 6.4197 -7.3013 19 1 6.8011 6.4991 -7.7135 20 1 5.4003 4.9828 -8.9861 21 6 3.5495 1.2983 0.0000 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.6941 1.8939 2.0481 26 1 1.7542 3.2484 0.8947 27 1 0.3121 2.2080 0.9710 28 1 2.1256 1.2109 -2.2107 29 1 1.4028 2.7499 -1.5666 30 1 5.4368 2.3803 -1.6860 31 1 4.3525 1.2019 -2.4632 32 1 6.2073 3.2484 -3.7993 33 1 5.1802 2.1347 -4.7335 34 1 7.4903 3.5266 -7.2404 35 1 3.9901 1.5980 0.9509 36 1 3.9845 0.3833 -0.4021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353049141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:26 Heat of formation + Delta-G solvation = -11.256367 kcal Electronic energy + Delta-G solvation = -17035.037102 eV Core-core repulsion = 14326.639210 eV Total energy + Delta-G solvation = -2708.397892 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.66497 -38.64124 -37.30467 -35.70218 -34.04871 -31.38355 -28.96588 -27.98362 -27.34757 -25.99156 -23.67695 -23.10322 -20.23612 -18.81769 -18.36252 -17.65331 -16.82343 -16.73347 -16.44972 -15.71055 -15.33171 -15.13334 -14.61141 -14.43910 -14.21930 -14.09136 -13.93799 -13.51355 -13.07330 -13.04107 -12.92575 -12.77480 -12.57051 -12.41959 -12.23587 -12.07489 -11.93295 -11.43301 -11.40274 -11.12181 -10.57603 -10.52270 -9.95451 -8.21381 -6.29944 1.38099 1.40915 1.51513 1.90480 1.93163 2.39786 2.58480 2.97057 3.13356 3.20500 3.35588 3.82966 3.87096 3.99601 4.27677 4.37448 4.44730 4.49267 4.50866 4.58895 4.67077 4.75081 4.81038 4.86154 4.89261 4.92059 5.04505 5.22671 5.23718 5.44410 5.57984 5.76873 5.89437 6.17844 6.21913 6.71724 6.84553 7.38869 8.89863 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046875 B = 0.005082 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.188450 B = 5508.554668 C = 5729.125864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.083 3.917 4 C -0.150 4.150 5 C -0.023 4.023 6 N -0.470 5.470 7 C 0.040 3.960 8 C 0.019 3.981 9 H 0.122 0.878 10 C 0.252 3.748 11 N -0.502 5.502 12 C 0.039 3.961 13 C -0.539 4.539 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.950 3.050 18 H -0.270 1.270 19 H -0.271 1.271 20 H -0.285 1.285 21 C 0.022 3.978 22 H 0.098 0.902 23 H 0.064 0.936 24 H 0.031 0.969 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.041 0.959 32 H 0.039 0.961 33 H -0.001 1.001 34 H 0.265 0.735 35 H 0.123 0.877 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.523 -3.773 16.636 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.313 6.313 3 C 0.043 3.957 4 C -0.207 4.207 5 C -0.153 4.153 6 N -0.194 5.194 7 C -0.090 4.090 8 C -0.003 4.003 9 H 0.140 0.860 10 C -0.064 4.064 11 N -0.180 5.180 12 C 0.000 4.000 13 C -0.578 4.578 14 H 0.071 0.929 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.775 3.225 18 H -0.194 1.194 19 H -0.196 1.196 20 H -0.211 1.211 21 C -0.106 4.106 22 H 0.116 0.884 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.136 0.864 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.017 0.983 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.688 -3.648 16.032 18.596 hybrid contribution 0.147 0.003 -1.624 1.630 sum -8.541 -3.645 14.408 17.141 Atomic orbital electron populations 1.22903 0.80103 1.03678 1.00655 1.87928 1.21239 1.27403 1.94768 1.23547 0.94519 0.83685 0.93998 1.21996 1.01194 0.99583 0.97945 1.24622 0.93915 0.98814 0.97949 1.68543 1.01392 1.39290 1.10152 1.22667 0.99005 0.96677 0.90625 1.19182 0.84141 1.02008 0.94933 0.86048 1.29558 0.94228 0.91366 0.91260 1.81011 1.14381 1.11065 1.11538 1.18992 0.93215 0.95871 0.91909 1.21559 1.11889 1.15871 1.08443 0.92899 1.25711 0.94957 0.98058 0.99953 1.70031 1.16403 1.38305 1.31573 0.85624 0.78428 0.79501 0.78902 1.19439 1.19633 1.21093 1.24212 0.93405 0.93970 0.98966 0.88383 0.91728 0.94981 0.89833 0.90151 0.91261 0.92918 0.90529 0.86381 0.94021 0.94318 0.98282 0.92646 0.85871 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.35 113.37 1.17 1.60 16 2 O -0.39 -9.72 10.67 -148.98 -1.59 -11.31 16 3 C 0.08 1.90 1.43 -10.15 -0.01 1.89 16 4 C -0.15 -2.64 8.80 71.98 0.63 -2.01 16 5 C -0.02 -0.68 4.93 86.40 0.43 -0.25 16 6 N -0.47 -12.46 6.12 -910.74 -5.57 -18.04 16 7 C 0.04 1.18 4.51 86.31 0.39 1.57 16 8 C 0.02 0.71 2.42 -12.60 -0.03 0.68 16 9 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 10 C 0.25 10.42 10.79 89.44 0.96 11.39 16 11 N -0.50 -22.20 18.01 20.01 0.36 -21.84 16 12 C 0.04 1.83 4.42 29.85 0.13 1.96 16 13 C -0.54 -28.97 8.60 25.60 0.22 -28.75 16 14 H 0.05 2.83 7.59 -2.91 -0.02 2.80 16 15 C 0.01 0.67 5.46 84.66 0.46 1.14 16 16 N -0.92 -53.32 13.29 21.45 0.28 -53.04 16 17 Si 0.95 43.73 29.54 68.60 2.03 45.75 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 C 0.02 0.49 7.38 86.40 0.64 1.13 16 22 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.06 0.95 6.40 -2.39 -0.02 0.94 16 24 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.08 1.48 8.00 -2.39 -0.02 1.46 16 27 H 0.07 1.11 6.27 -2.39 -0.01 1.09 16 28 H 0.05 1.79 6.74 -2.39 -0.02 1.78 16 29 H 0.08 2.34 7.89 -2.39 -0.02 2.32 16 30 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.04 1.29 7.69 -2.39 -0.02 1.27 16 32 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.12 2.08 8.10 -2.39 -0.02 2.06 16 36 H 0.08 1.76 7.79 -2.39 -0.02 1.74 16 Total: -1.00 -63.36 299.80 1.55 -61.80 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.05 Total: 6.34 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 4.99 Total: -9.66 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -4.93 Total: -92.92 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -1.59 Total: -11.31 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -63.36 1.55 -61.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353049141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.547 kcal (2) G-P(sol) polarization free energy of solvation -63.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds