Wall clock time and date at job start Sun Mar 29 2020 22:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99807 * 2 1 4 4 C 1.52998 * 113.25872 * 47.04813 * 3 2 1 5 5 C 1.53515 * 114.16914 * 179.97438 * 3 2 1 6 6 N 1.47480 * 87.93122 * 87.62273 * 5 3 2 7 7 C 1.46904 * 110.99753 * 138.70320 * 6 5 3 8 8 C 1.52996 * 109.46858 * 169.99745 * 7 6 5 9 9 H 1.09000 * 109.47753 * 305.00128 * 8 7 6 10 10 C 1.47204 * 109.47042 * 64.99895 * 8 7 6 11 11 N 5.41537 * 99.59951 * 298.10863 * 2 1 3 12 12 C 1.52996 * 109.47153 * 184.99851 * 8 7 6 13 13 C 1.50702 * 109.47159 * 175.00123 * 12 8 7 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 8 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 8 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 C 1.47472 * 87.83591 * 27.01036 * 6 5 3 22 22 H 1.09005 * 109.46979 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47292 * 300.00259 * 1 2 3 24 24 H 1.09005 * 109.46671 * 60.00364 * 1 2 3 25 25 H 1.09000 * 109.47480 * 192.94911 * 4 3 2 26 26 H 1.09005 * 109.47121 * 312.95240 * 4 3 2 27 27 H 1.09005 * 109.47188 * 72.94518 * 4 3 2 28 28 H 1.09005 * 113.47686 * 332.85885 * 5 3 2 29 29 H 1.09000 * 113.47972 * 202.38949 * 5 3 2 30 30 H 1.08997 * 109.46933 * 49.99906 * 7 6 5 31 31 H 1.08996 * 109.47325 * 290.00048 * 7 6 5 32 32 H 1.09004 * 109.47066 * 55.00326 * 12 8 7 33 33 H 1.08994 * 109.47405 * 295.00156 * 12 8 7 34 34 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 35 35 H 1.09003 * 113.47804 * 87.75156 * 21 6 5 36 36 H 1.09005 * 113.48063 * 218.22272 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.3809 2.2469 1.0288 5 6 3.5453 1.3100 0.0006 6 7 3.4929 1.2485 -1.4720 7 6 4.5012 2.1324 -2.0720 8 6 4.5886 1.8598 -3.5750 9 1 4.7849 0.8006 -3.7414 10 6 3.3159 2.2295 -4.2155 11 7 2.3321 2.5157 -4.7098 12 6 5.7234 2.6897 -4.1786 13 6 5.8898 2.3305 -5.6327 14 1 5.2499 1.5852 -6.0816 15 6 6.8549 2.9580 -6.3917 16 7 6.9965 2.6485 -7.6621 17 14 7.9613 4.2475 -5.6156 18 1 9.1744 3.5920 -5.0644 19 1 8.3598 5.2417 -6.6443 20 1 7.2291 4.9341 -4.5212 21 6 2.1808 1.9175 -1.3974 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6979 3.2701 0.8268 26 1 0.2947 2.1833 0.9630 27 1 1.7017 1.9581 2.0297 28 1 3.9820 0.4217 0.4571 29 1 3.9767 2.2358 0.3814 30 1 5.4707 1.9429 -1.6114 31 1 4.2176 3.1718 -1.9071 32 1 6.6503 2.4807 -3.6444 33 1 5.4847 3.7496 -4.0912 34 1 7.6757 3.0896 -8.1959 35 1 2.2479 3.0055 -1.3896 36 1 1.4609 1.5442 -2.1258 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353049142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:29 Heat of formation + Delta-G solvation = 17.589444 kcal Electronic energy + Delta-G solvation = -16957.763967 eV Core-core repulsion = 14250.616923 eV Total energy + Delta-G solvation = -2707.147044 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74929 -37.33467 -36.00834 -33.85793 -32.28885 -30.63989 -28.16042 -26.96837 -26.07471 -24.67800 -21.78227 -21.41757 -19.80048 -16.89778 -16.87250 -16.55865 -15.85363 -15.70410 -14.87171 -14.48778 -14.17018 -14.07333 -13.36162 -13.30478 -12.74080 -12.51021 -12.42420 -12.37163 -12.19581 -11.96006 -11.60560 -11.44231 -11.26534 -10.94342 -10.78190 -10.46282 -10.40155 -9.92056 -9.78420 -9.54891 -9.31486 -8.81860 -8.60643 -6.09429 -4.09905 3.26098 3.34514 3.35183 3.40586 3.59885 3.66919 4.02713 4.20082 4.38852 4.53157 4.74135 4.93414 5.09281 5.12640 5.24247 5.25100 5.29603 5.33233 5.38190 5.46732 5.51716 5.62874 5.70635 5.78556 5.80889 5.93859 6.22155 6.33205 6.39199 6.93714 7.00123 7.11361 7.16785 7.64913 8.40414 8.46500 8.94716 9.50295 11.03823 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.043367 B = 0.005260 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.502814 B = 5321.447680 C = 5628.753870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.348 6.348 3 C 0.081 3.919 4 C -0.170 4.170 5 C 0.013 3.987 6 N -0.458 5.458 7 C 0.023 3.977 8 C 0.024 3.976 9 H 0.115 0.885 10 C 0.246 3.754 11 N -0.473 5.473 12 C -0.005 4.005 13 C -0.527 4.527 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.878 3.122 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.023 4.023 22 H 0.086 0.914 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.022 0.978 34 H 0.264 0.736 35 H 0.075 0.925 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.959 -0.964 19.758 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.266 6.266 3 C 0.040 3.960 4 C -0.228 4.228 5 C -0.116 4.116 6 N -0.180 5.180 7 C -0.107 4.107 8 C 0.002 3.998 9 H 0.132 0.868 10 C -0.071 4.071 11 N -0.150 5.150 12 C -0.044 4.044 13 C -0.565 4.565 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.705 3.295 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.152 4.152 22 H 0.105 0.895 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.118 -1.294 18.456 20.626 hybrid contribution 0.850 1.638 0.554 1.927 sum -8.268 0.344 19.010 20.733 Atomic orbital electron populations 1.22788 0.81420 1.02724 1.00071 1.87980 1.19340 1.24828 1.94496 1.22571 0.94534 0.84470 0.94378 1.22224 1.01716 0.99459 0.99405 1.23961 0.93457 1.02783 0.91360 1.68995 1.01920 1.39683 1.07387 1.22885 0.97448 0.95261 0.95107 1.18934 0.86738 1.03548 0.90583 0.86751 1.29087 0.93651 0.92079 0.92269 1.81073 1.13609 1.10391 1.09926 1.19646 0.92135 0.95090 0.97506 1.21040 1.18914 1.24036 0.92515 0.90776 1.24995 0.96999 0.96472 0.94653 1.69908 1.34169 1.42741 1.06717 0.86813 0.81298 0.81984 0.79419 1.19973 1.21328 1.18962 1.24596 0.94635 0.98096 0.97915 0.89521 0.93775 0.93930 0.91090 0.91582 0.91286 0.88673 0.89994 0.88841 0.93186 0.94790 0.95930 0.92576 0.90665 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.36 101.05 1.05 1.30 16 2 O -0.35 -4.41 10.71 -35.23 -0.38 -4.78 16 3 C 0.08 0.91 1.47 -90.09 -0.13 0.78 16 4 C -0.17 -1.41 9.02 37.16 0.34 -1.07 16 5 C 0.01 0.15 7.11 -7.55 -0.05 0.09 16 6 N -0.46 -6.45 6.22 -244.64 -1.52 -7.97 16 7 C 0.02 0.32 4.36 -3.82 -0.02 0.31 16 8 C 0.02 0.44 2.42 -93.41 -0.23 0.22 16 9 H 0.11 2.13 8.14 -51.93 -0.42 1.71 16 10 C 0.25 5.16 12.56 -20.71 -0.26 4.90 16 11 N -0.47 -10.66 18.55 42.22 0.78 -9.88 16 12 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 13 C -0.53 -14.45 9.15 -34.44 -0.32 -14.76 16 14 H 0.07 2.24 7.84 -52.49 -0.41 1.83 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 16 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 17 Si 0.88 20.75 27.47 -169.99 -4.67 16.09 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 21 C -0.02 -0.31 5.89 -7.56 -0.04 -0.35 16 22 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.34 6.36 -51.93 -0.33 0.01 16 24 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.54 7.91 -51.93 -0.41 0.12 16 26 H 0.07 0.50 6.12 -51.93 -0.32 0.19 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 30 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 31 H 0.05 0.68 7.30 -51.93 -0.38 0.30 16 32 H 0.03 0.68 7.58 -51.93 -0.39 0.29 16 33 H 0.02 0.50 7.19 -51.93 -0.37 0.12 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.08 0.95 7.22 -51.93 -0.38 0.57 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 299.58 15.07 4.51 4.51 Total: -1.00 -32.22 299.58 -5.88 -38.10 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.52 Total: -2.59 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 0.14 Total: -6.89 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.04 Total: -44.44 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.38 Total: -4.78 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.22 -5.88 -38.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353049142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.686 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds