Wall clock time and date at job start Sun Mar 29 2020 22:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99807 * 2 1 4 4 C 1.52998 * 113.25872 * 47.04813 * 3 2 1 5 5 C 1.53515 * 114.16914 * 179.97438 * 3 2 1 6 6 N 1.47480 * 87.93122 * 87.62273 * 5 3 2 7 7 C 1.46904 * 110.99753 * 138.70320 * 6 5 3 8 8 C 1.52996 * 109.46858 * 169.99745 * 7 6 5 9 9 H 1.09000 * 109.47753 * 305.00128 * 8 7 6 10 10 C 1.47204 * 109.47042 * 64.99895 * 8 7 6 11 11 N 5.41537 * 99.59951 * 298.10863 * 2 1 3 12 12 C 1.52996 * 109.47153 * 184.99851 * 8 7 6 13 13 C 1.50702 * 109.47159 * 175.00123 * 12 8 7 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 8 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 8 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 C 1.47472 * 87.83591 * 27.01036 * 6 5 3 22 22 H 1.09005 * 109.46979 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47292 * 300.00259 * 1 2 3 24 24 H 1.09005 * 109.46671 * 60.00364 * 1 2 3 25 25 H 1.09000 * 109.47480 * 192.94911 * 4 3 2 26 26 H 1.09005 * 109.47121 * 312.95240 * 4 3 2 27 27 H 1.09005 * 109.47188 * 72.94518 * 4 3 2 28 28 H 1.09005 * 113.47686 * 332.85885 * 5 3 2 29 29 H 1.09000 * 113.47972 * 202.38949 * 5 3 2 30 30 H 1.08997 * 109.46933 * 49.99906 * 7 6 5 31 31 H 1.08996 * 109.47325 * 290.00048 * 7 6 5 32 32 H 1.09004 * 109.47066 * 55.00326 * 12 8 7 33 33 H 1.08994 * 109.47405 * 295.00156 * 12 8 7 34 34 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 35 35 H 1.09003 * 113.47804 * 87.75156 * 21 6 5 36 36 H 1.09005 * 113.48063 * 218.22272 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.3809 2.2469 1.0288 5 6 3.5453 1.3100 0.0006 6 7 3.4929 1.2485 -1.4720 7 6 4.5012 2.1324 -2.0720 8 6 4.5886 1.8598 -3.5750 9 1 4.7849 0.8006 -3.7414 10 6 3.3159 2.2295 -4.2155 11 7 2.3321 2.5157 -4.7098 12 6 5.7234 2.6897 -4.1786 13 6 5.8898 2.3305 -5.6327 14 1 5.2499 1.5852 -6.0816 15 6 6.8549 2.9580 -6.3917 16 7 6.9965 2.6485 -7.6621 17 14 7.9613 4.2475 -5.6156 18 1 9.1744 3.5920 -5.0644 19 1 8.3598 5.2417 -6.6443 20 1 7.2291 4.9341 -4.5212 21 6 2.1808 1.9175 -1.3974 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6979 3.2701 0.8268 26 1 0.2947 2.1833 0.9630 27 1 1.7017 1.9581 2.0297 28 1 3.9820 0.4217 0.4571 29 1 3.9767 2.2358 0.3814 30 1 5.4707 1.9429 -1.6114 31 1 4.2176 3.1718 -1.9071 32 1 6.6503 2.4807 -3.6444 33 1 5.4847 3.7496 -4.0912 34 1 7.6757 3.0896 -8.1959 35 1 2.2479 3.0055 -1.3896 36 1 1.4609 1.5442 -2.1258 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353049142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:28 Heat of formation + Delta-G solvation = -6.986871 kcal Electronic energy + Delta-G solvation = -16958.829676 eV Core-core repulsion = 14250.616923 eV Total energy + Delta-G solvation = -2708.212753 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.68152 -38.56633 -37.32187 -35.62344 -34.10827 -31.73186 -29.44104 -27.94953 -27.06211 -25.95028 -23.27429 -22.87661 -20.65468 -18.92235 -18.37942 -17.44971 -16.89466 -16.64089 -16.27785 -15.66785 -15.51347 -15.19584 -14.84226 -14.59905 -14.25232 -13.96355 -13.63710 -13.42846 -13.36317 -13.11466 -12.99458 -12.63463 -12.50707 -12.37773 -12.17753 -11.92083 -11.67294 -11.48448 -11.30286 -11.23120 -10.73522 -10.46567 -9.80001 -8.25232 -6.31548 1.42666 1.45641 1.56077 1.92990 1.98032 2.41085 2.61250 3.05945 3.10541 3.23603 3.36062 3.71247 3.99032 4.14894 4.29584 4.35856 4.47305 4.49679 4.51841 4.60901 4.67266 4.74853 4.77462 4.84031 4.85667 4.93317 4.96449 5.20259 5.22219 5.35044 5.46983 5.62900 6.04830 6.25604 6.31497 6.73964 6.79867 7.32913 8.92127 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.043367 B = 0.005260 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.502814 B = 5321.447680 C = 5628.753870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.375 6.375 3 C 0.083 3.917 4 C -0.165 4.165 5 C 0.020 3.980 6 N -0.485 5.485 7 C 0.032 3.968 8 C 0.027 3.973 9 H 0.109 0.891 10 C 0.253 3.747 11 N -0.510 5.510 12 C -0.001 4.001 13 C -0.534 4.534 14 H 0.023 0.977 15 C 0.002 3.998 16 N -0.956 5.956 17 Si 0.953 3.047 18 H -0.256 1.256 19 H -0.295 1.295 20 H -0.235 1.235 21 C -0.027 4.027 22 H 0.096 0.904 23 H 0.066 0.934 24 H 0.032 0.968 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.265 0.735 35 H 0.083 0.917 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.003 0.394 23.271 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.294 6.294 3 C 0.043 3.957 4 C -0.222 4.222 5 C -0.108 4.108 6 N -0.207 5.207 7 C -0.097 4.097 8 C 0.005 3.995 9 H 0.127 0.873 10 C -0.063 4.063 11 N -0.187 5.187 12 C -0.040 4.040 13 C -0.572 4.572 14 H 0.042 0.958 15 C -0.195 4.195 16 N -0.596 5.596 17 Si 0.775 3.225 18 H -0.180 1.180 19 H -0.221 1.221 20 H -0.158 1.158 21 C -0.157 4.157 22 H 0.114 0.886 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.140 0.860 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.184 0.048 22.005 23.478 hybrid contribution 0.460 1.098 -0.621 1.342 sum -7.725 1.146 21.385 22.766 Atomic orbital electron populations 1.22930 0.80181 1.03625 1.00618 1.87935 1.20879 1.26031 1.94569 1.22664 0.95125 0.84329 0.93599 1.22202 1.01828 0.99173 0.99030 1.24059 0.93418 1.04308 0.89059 1.68917 1.01982 1.40009 1.09825 1.22816 0.99205 0.96111 0.91564 1.19023 0.84332 1.02573 0.93581 0.87309 1.29728 0.93937 0.91197 0.91443 1.81058 1.14923 1.11570 1.11175 1.19586 0.94567 0.95737 0.94062 1.21408 1.17613 1.22534 0.95670 0.95811 1.26096 0.99071 0.99299 0.95010 1.70101 1.35659 1.44921 1.08956 0.85626 0.79445 0.78495 0.78907 1.18019 1.22136 1.15807 1.24619 0.93901 0.98458 0.98724 0.88598 0.91606 0.94921 0.90007 0.91186 0.89841 0.88474 0.87104 0.86044 0.91875 0.91703 0.95284 0.92616 0.89880 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.36 113.37 1.17 1.57 16 2 O -0.38 -9.03 10.71 -148.98 -1.60 -10.63 16 3 C 0.08 1.68 1.47 -10.45 -0.02 1.67 16 4 C -0.16 -2.20 9.02 71.98 0.65 -1.55 16 5 C 0.02 0.37 7.11 83.57 0.59 0.96 16 6 N -0.49 -12.67 6.22 -928.29 -5.77 -18.44 16 7 C 0.03 0.83 4.36 86.30 0.38 1.21 16 8 C 0.03 0.97 2.42 -12.60 -0.03 0.94 16 9 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 10 C 0.25 10.70 12.56 89.42 1.12 11.82 16 11 N -0.51 -23.51 18.55 20.03 0.37 -23.14 16 12 C 0.00 -0.02 3.49 29.85 0.10 0.08 16 13 C -0.53 -29.65 9.15 25.60 0.23 -29.41 16 14 H 0.02 1.50 7.84 -2.91 -0.02 1.48 16 15 C 0.00 0.10 5.47 84.66 0.46 0.56 16 16 N -0.96 -60.10 13.96 21.45 0.30 -59.80 16 17 Si 0.95 41.62 27.47 68.60 1.88 43.51 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 20 H -0.24 -9.08 6.54 99.48 0.65 -8.43 16 21 C -0.03 -0.70 5.89 83.57 0.49 -0.21 16 22 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.07 0.87 6.36 -2.39 -0.02 0.85 16 24 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.08 0.93 7.91 -2.39 -0.02 0.91 16 26 H 0.07 0.88 6.12 -2.38 -0.01 0.86 16 27 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.11 1.44 7.87 -2.39 -0.02 1.42 16 30 H 0.12 2.44 8.08 -2.39 -0.02 2.42 16 31 H 0.06 1.47 7.30 -2.39 -0.02 1.45 16 32 H 0.06 2.34 7.58 -2.38 -0.02 2.32 16 33 H 0.03 1.18 7.19 -2.39 -0.02 1.16 16 34 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 35 H 0.08 1.94 7.22 -2.39 -0.02 1.92 16 36 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -72.78 299.58 1.35 -71.43 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.00 Total: 9.44 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 5.17 Total: -12.36 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -5.10 Total: -101.38 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.60 Total: -10.63 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.88 Total: 43.51 kcal Total: -72.78 1.35 -71.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353049142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.443 kcal (2) G-P(sol) polarization free energy of solvation -72.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds