Wall clock time and date at job start Sun Mar 29 2020 21:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99817 * 2 1 4 4 H 1.48501 * 109.47103 * 271.85690 * 3 2 1 5 5 H 1.48497 * 109.47261 * 31.85568 * 3 2 1 6 6 H 1.48500 * 109.47360 * 151.85664 * 3 2 1 7 7 C 1.38807 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00267 * 344.61754 * 7 2 1 9 9 N 1.36939 * 120.00129 * 164.61542 * 7 2 1 10 10 C 1.46504 * 119.99988 * 124.51425 * 9 7 2 11 11 C 1.50702 * 109.46959 * 89.99876 * 10 9 7 12 12 O 1.21279 * 119.99801 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99711 * 179.97438 * 11 10 9 14 14 C 1.47021 * 125.64598 * 180.02562 * 13 11 10 15 15 C 1.54322 * 107.40168 * 178.98672 * 14 13 11 16 16 C 1.55153 * 102.94430 * 337.73131 * 15 14 13 17 17 C 1.47738 * 125.82090 * 359.90937 * 13 11 10 18 18 C 1.46502 * 119.99890 * 304.51750 * 9 7 2 19 19 C 1.52997 * 117.49673 * 3.07234 * 18 9 7 20 20 C 1.52993 * 117.49998 * 294.40938 * 18 9 7 21 21 H 0.96998 * 120.00189 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46853 * 330.00098 * 10 9 7 23 23 H 1.09001 * 109.47247 * 210.00410 * 10 9 7 24 24 H 1.08999 * 109.88375 * 59.49290 * 14 13 11 25 25 H 1.09001 * 109.88071 * 298.48000 * 14 13 11 26 26 H 1.09000 * 110.72181 * 96.09243 * 15 14 13 27 27 H 1.09003 * 110.72230 * 219.36643 * 15 14 13 28 28 H 1.08993 * 111.00668 * 153.57698 * 16 15 14 29 29 H 1.08999 * 111.00279 * 277.42981 * 16 15 14 30 30 H 1.08997 * 110.28842 * 85.25444 * 17 13 11 31 31 H 1.08995 * 110.47154 * 323.02083 * 17 13 11 32 32 H 1.09005 * 115.54713 * 148.74071 * 18 9 7 33 33 H 1.08994 * 117.50390 * 0.02562 * 19 18 9 34 34 H 1.09004 * 117.49501 * 145.02173 * 19 18 9 35 35 H 1.08991 * 117.50233 * 214.97872 * 20 18 9 36 36 H 1.09007 * 117.49910 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4583 2.0691 -1.3994 5 1 1.4678 2.6410 0.7389 6 1 3.5668 1.4293 0.6604 7 6 2.0103 -1.2021 0.0005 8 1 1.4993 -2.1206 0.2490 9 7 3.3429 -1.2235 -0.3141 10 6 4.3070 -1.8082 0.6212 11 6 4.4708 -3.2760 0.3216 12 8 3.8442 -3.7836 -0.5843 13 7 5.3143 -4.0244 1.0597 14 6 5.5692 -5.4607 0.8766 15 6 6.6195 -5.8806 1.9264 16 6 7.3197 -4.5402 2.2728 17 6 6.1394 -3.5409 2.1858 18 6 3.8043 -0.6616 -1.5859 19 6 2.7590 -0.0013 -2.4871 20 6 3.3536 -1.3586 -2.8711 21 1 -0.4850 0.8400 0.0004 22 1 3.9445 -1.6839 1.6417 23 1 5.2684 -1.3059 0.5135 24 1 5.9540 -5.6440 -0.1266 25 1 4.6478 -6.0230 1.0285 26 1 6.1365 -6.3025 2.8078 27 1 7.3304 -6.5880 1.4992 28 1 7.7366 -4.5659 3.2795 29 1 8.0892 -4.3003 1.5390 30 1 5.5623 -3.5544 3.1103 31 1 6.5079 -2.5352 1.9841 32 1 4.8041 -0.2274 -1.5728 33 1 1.7282 0.0155 -2.1336 34 1 3.0713 0.8671 -3.0673 35 1 4.0565 -1.3826 -3.7037 36 1 2.7140 -2.2355 -2.7704 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357232042.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:33 Heat of formation + Delta-G solvation = 24.910185 kcal Electronic energy + Delta-G solvation = -17604.318510 eV Core-core repulsion = 14897.488917 eV Total energy + Delta-G solvation = -2706.829593 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.44679 -37.41315 -36.42246 -32.85163 -31.78781 -31.16320 -29.02991 -26.75587 -23.90651 -22.76087 -21.42118 -21.08778 -19.88350 -18.80329 -16.77361 -16.50646 -16.37395 -15.29390 -14.68973 -14.37804 -13.98994 -13.46211 -13.41324 -13.25345 -12.85474 -12.47634 -12.10699 -11.84450 -11.62208 -11.35036 -11.24250 -11.07449 -10.81064 -10.66870 -10.48321 -10.29316 -9.80807 -9.45897 -9.08488 -9.04743 -8.38215 -8.22877 -6.45727 -5.97990 -3.67685 3.38580 3.42061 3.43565 3.49184 3.55338 4.52501 4.54437 4.59989 4.83997 4.91016 4.98635 5.28438 5.33439 5.36668 5.51312 5.65091 5.68023 5.76200 5.91010 5.93385 5.96950 6.08769 6.13157 6.16410 6.21731 6.35289 6.61635 6.66107 6.72640 7.20883 7.42915 7.99584 8.11949 8.54300 8.93691 9.05162 9.65794 10.12729 11.11656 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034425 B = 0.007153 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.171430 B = 3913.316574 C = 4107.118227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.886 3.114 4 H -0.269 1.269 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.280 4.280 8 H 0.069 0.931 9 N -0.551 5.551 10 C 0.140 3.860 11 C 0.498 3.502 12 O -0.517 6.517 13 N -0.634 5.634 14 C 0.106 3.894 15 C -0.131 4.131 16 C -0.133 4.133 17 C 0.101 3.899 18 C 0.105 3.895 19 C -0.197 4.197 20 C -0.202 4.202 21 H 0.265 0.735 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.173 -5.574 4.514 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.714 3.286 4 H -0.195 1.195 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.409 4.409 8 H 0.087 0.913 9 N -0.268 5.268 10 C 0.010 3.990 11 C 0.285 3.715 12 O -0.389 6.389 13 N -0.374 5.374 14 C -0.017 4.017 15 C -0.169 4.169 16 C -0.172 4.172 17 C -0.022 4.022 18 C -0.002 4.002 19 C -0.235 4.235 20 C -0.242 4.242 21 H 0.075 0.925 22 H 0.105 0.895 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.541 -5.655 3.961 16.097 hybrid contribution 0.371 0.728 -0.047 0.818 sum 14.911 -4.927 3.914 16.185 Atomic orbital electron populations 1.69877 1.06273 1.27067 1.50301 1.25828 0.95001 0.98505 0.95220 0.86775 0.80063 0.83390 0.78328 1.19483 1.23187 1.19581 1.18553 0.82936 0.93379 1.46024 0.91300 1.43194 1.03956 1.66667 1.13022 1.20836 0.94425 0.87774 0.95983 1.22677 0.77084 0.90825 0.80891 1.90652 1.44499 1.73665 1.30133 1.48999 1.44728 1.09120 1.34530 1.21779 0.98186 0.83106 0.98677 1.22625 0.97748 0.97469 0.99092 1.22769 0.97304 0.94886 1.02193 1.22288 0.91459 0.98288 0.90175 1.21307 0.94857 1.00186 0.83836 1.23527 1.01710 0.94744 1.03538 1.23297 1.04433 0.96689 0.99805 0.92513 0.89521 0.91699 0.92229 0.92129 0.90804 0.90490 0.90145 0.90790 0.91589 0.90618 0.89676 0.86256 0.90736 0.91382 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.97 55.49 0.78 -26.47 16 2 C 0.06 1.63 3.73 -17.43 -0.07 1.57 16 3 Si 0.89 22.04 24.88 -169.99 -4.23 17.81 16 4 H -0.27 -6.43 5.79 56.52 0.33 -6.10 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.28 -8.05 9.17 -15.06 -0.14 -8.19 16 8 H 0.07 2.26 8.06 -52.49 -0.42 1.83 16 9 N -0.55 -13.61 1.54 -167.02 -0.26 -13.87 16 10 C 0.14 2.86 5.22 -5.19 -0.03 2.83 16 11 C 0.50 10.23 7.92 -10.99 -0.09 10.15 16 12 O -0.52 -12.98 16.76 5.56 0.09 -12.88 16 13 N -0.63 -10.04 3.34 -170.28 -0.57 -10.61 16 14 C 0.11 1.45 6.86 -3.07 -0.02 1.43 16 15 C -0.13 -1.21 6.95 -24.90 -0.17 -1.39 16 16 C -0.13 -1.15 7.08 -24.59 -0.17 -1.32 16 17 C 0.10 1.15 6.70 -2.36 -0.02 1.13 16 18 C 0.11 2.41 5.16 -67.93 -0.35 2.06 16 19 C -0.20 -4.59 6.69 -26.69 -0.18 -4.77 16 20 C -0.20 -4.54 10.36 -26.70 -0.28 -4.81 16 21 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.09 1.71 8.04 -51.93 -0.42 1.29 16 23 H 0.07 1.12 7.79 -51.93 -0.40 0.72 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.79 7.51 -51.93 -0.39 0.40 16 32 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.12 3.20 5.08 -51.93 -0.26 2.93 16 34 H 0.07 1.56 7.86 -51.93 -0.41 1.15 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.09 2.41 8.14 -51.92 -0.42 1.99 16 LS Contribution 290.41 15.07 4.38 4.38 Total: -1.00 -33.80 290.41 -7.06 -40.86 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.74 Total: 2.10 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.51 Total: -1.32 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.05 Total: -50.94 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.23 Total: 17.81 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.80 -7.06 -40.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357232042.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.771 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds