Wall clock time and date at job start Sun Mar 29 2020 22:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47130 * 2 1 4 4 C 1.52997 * 109.47293 * 175.27945 * 3 2 1 5 5 C 1.52999 * 109.46801 * 294.45141 * 4 3 2 6 6 C 1.50702 * 109.46780 * 295.28059 * 3 2 1 7 7 N 1.29946 * 126.28835 * 300.02385 * 6 3 2 8 8 O 1.21301 * 110.25122 * 180.02562 * 7 6 3 9 9 C 1.33641 * 109.80940 * 359.97438 * 8 7 6 10 10 C 1.50707 * 126.54557 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46783 * 270.01966 * 10 9 8 12 12 C 1.50709 * 109.46919 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99469 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00026 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99893 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00046 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46922 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47282 * 120.00187 * 16 14 12 19 19 H 1.48508 * 109.47177 * 240.00295 * 16 14 12 20 20 N 1.31126 * 106.89934 * 0.22375 * 9 8 7 21 21 H 1.09000 * 109.47387 * 66.59992 * 1 2 3 22 22 H 1.09002 * 109.46726 * 186.59679 * 1 2 3 23 23 H 1.09001 * 109.47531 * 306.59438 * 1 2 3 24 24 H 1.08999 * 109.47630 * 239.99722 * 2 1 3 25 25 H 1.08999 * 109.46974 * 119.99394 * 2 1 3 26 26 H 1.09002 * 109.47050 * 55.27812 * 3 2 1 27 27 H 1.08998 * 109.47181 * 54.45710 * 4 3 2 28 28 H 1.09004 * 109.46608 * 174.45713 * 4 3 2 29 29 H 1.09001 * 109.46825 * 186.22501 * 5 4 3 30 30 H 1.08999 * 109.47570 * 306.22200 * 5 4 3 31 31 H 1.09003 * 109.47097 * 66.22921 * 5 4 3 32 32 H 1.09001 * 109.47310 * 30.02136 * 10 9 8 33 33 H 1.09001 * 109.46915 * 150.02568 * 10 9 8 34 34 H 1.09001 * 109.47336 * 300.00154 * 11 10 9 35 35 H 1.08995 * 109.47250 * 60.00379 * 11 10 9 36 36 H 0.97004 * 119.99485 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4442 0.1187 5 6 3.9712 0.8839 1.4833 6 6 1.6353 2.1183 -1.2848 7 7 1.9669 1.7488 -2.4857 8 8 1.4821 2.5005 -3.3051 9 6 0.7733 3.4492 -2.6859 10 6 0.0148 4.5745 -3.3415 11 6 0.9340 5.7880 -3.4944 12 6 0.1753 6.9135 -4.1494 13 1 -0.8589 6.7765 -4.4291 14 6 0.8014 8.1177 -4.3916 15 7 2.0606 8.2845 -4.0505 16 14 -0.1388 9.5124 -5.2041 17 1 -1.5291 9.0736 -5.4865 18 1 -0.1657 10.6866 -4.2955 19 1 0.5309 9.8859 -6.4759 20 7 0.8684 3.2172 -1.3989 21 1 -0.3634 0.4081 -0.9431 22 1 -0.3633 -1.0209 0.1181 23 1 -0.3634 0.6126 0.8251 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 1.6092 1.9802 0.8447 27 1 3.9919 0.8245 -0.6700 28 1 3.9363 2.4644 0.0199 29 1 5.0486 0.9870 1.6125 30 1 3.4566 1.4353 2.2702 31 1 3.6977 -0.1698 1.5394 32 1 -0.3316 4.2549 -4.3244 33 1 -0.8421 4.8433 -2.7238 34 1 1.2804 6.1075 -2.5115 35 1 1.7909 5.5193 -4.1120 36 1 2.5012 9.1316 -4.2213 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361248707.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:26 Heat of formation + Delta-G solvation = 27.599605 kcal Electronic energy + Delta-G solvation = -16728.346817 eV Core-core repulsion = 14021.633846 eV Total energy + Delta-G solvation = -2706.712971 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.06540 -37.56356 -35.17450 -33.99832 -32.32524 -31.86393 -30.10703 -27.27721 -25.82913 -23.36650 -22.96123 -22.53901 -21.20017 -19.39014 -17.57400 -17.14920 -16.36513 -15.24680 -14.83231 -14.53905 -14.35389 -14.05626 -13.78085 -13.23721 -12.62523 -12.42966 -12.19465 -12.05073 -11.82977 -11.59186 -11.51064 -11.35897 -11.01728 -10.87871 -10.82203 -10.78060 -10.51298 -10.48698 -10.11772 -9.95332 -9.30751 -9.12055 -8.45418 -6.09477 -4.14134 1.66639 2.70393 3.27975 3.35150 3.38342 3.43023 3.92460 4.36025 4.40831 4.81198 4.81936 4.95830 5.11244 5.21206 5.27309 5.28994 5.52513 5.58582 5.65549 5.76262 5.78689 5.91113 5.96737 6.01968 6.08398 6.15596 6.20401 6.26944 6.28221 6.51027 6.64326 7.49735 7.56906 7.86371 8.21823 8.66642 8.91452 9.50916 11.01870 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041045 B = 0.004622 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.020901 B = 6056.323590 C = 6378.570548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.006 3.994 4 C -0.118 4.118 5 C -0.149 4.149 6 C 0.173 3.827 7 N -0.398 5.398 8 O 0.065 5.935 9 C 0.211 3.789 10 C -0.028 4.028 11 C 0.027 3.973 12 C -0.525 4.525 13 H 0.062 0.938 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 N -0.496 5.496 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.026 0.974 35 H 0.023 0.977 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 -14.540 8.001 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.015 4.015 4 C -0.156 4.156 5 C -0.207 4.207 6 C -0.100 4.100 7 N -0.109 5.109 8 O 0.010 5.990 9 C -0.008 4.008 10 C -0.067 4.067 11 C -0.011 4.011 12 C -0.563 4.563 13 H 0.080 0.920 14 C -0.143 4.143 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 N -0.230 5.230 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.123 -15.029 8.253 17.146 hybrid contribution -0.414 1.040 -0.591 1.266 sum -0.291 -13.988 7.662 15.952 Atomic orbital electron populations 1.21761 0.95516 1.01438 1.02080 1.21636 0.96292 0.94672 1.02860 1.19657 0.96368 0.95229 0.90198 1.21560 0.93399 1.02246 0.98429 1.21797 1.01353 1.01017 0.96512 1.25649 0.96326 0.92697 0.95327 1.74483 1.20025 1.15750 1.00623 1.85269 1.48681 1.30539 1.34550 1.29604 0.91971 0.92169 0.87054 1.20733 0.97883 0.88687 0.99418 1.19160 0.94247 0.89379 0.98288 1.21115 0.98006 0.97092 1.40104 0.91977 1.25012 0.94908 0.98736 0.95594 1.69985 1.10681 1.25227 1.47104 0.86454 0.80032 0.81965 0.79074 1.19550 1.20942 1.20925 1.71936 1.20142 1.14692 1.16201 0.93238 0.92617 0.92312 0.91348 0.90542 0.88343 0.91231 0.91495 0.92422 0.92388 0.92406 0.89184 0.88300 0.95542 0.95828 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.61 37.16 0.36 -1.32 16 2 C -0.12 -1.28 5.26 -26.73 -0.14 -1.42 16 3 C 0.01 0.07 2.33 -91.77 -0.21 -0.14 16 4 C -0.12 -1.40 5.38 -26.73 -0.14 -1.55 16 5 C -0.15 -1.34 9.53 37.16 0.35 -0.98 16 6 C 0.17 2.99 5.81 -156.37 -0.91 2.08 16 7 N -0.40 -7.30 12.16 30.90 0.38 -6.92 16 8 O 0.06 1.25 11.31 18.10 0.20 1.45 16 9 C 0.21 4.10 7.77 -13.06 -0.10 4.00 16 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 11 C 0.03 0.68 4.96 -27.88 -0.14 0.55 16 12 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 16 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 N -0.50 -9.62 11.55 -9.87 -0.11 -9.73 16 21 H 0.05 0.66 7.59 -51.93 -0.39 0.26 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.66 6.51 -51.93 -0.34 0.33 16 26 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 6.79 -51.93 -0.35 0.10 16 32 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 304.80 15.07 4.59 4.59 Total: -1.00 -29.83 304.80 -6.43 -36.26 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.70 Total: -3.71 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.51 Total: -12.35 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 1.00 Total: -42.17 kcal Atomic # 8 Polarization: 1.25 SS G_CDS: 0.20 Total: 1.45 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.83 -6.43 -36.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361248707.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.859 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds