Wall clock time and date at job start Sun Mar 29 2020 22:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47130 * 2 1 4 4 C 1.52997 * 109.47293 * 175.27945 * 3 2 1 5 5 C 1.52999 * 109.46801 * 294.45141 * 4 3 2 6 6 C 1.50702 * 109.46780 * 295.28059 * 3 2 1 7 7 N 1.29946 * 126.28835 * 300.02385 * 6 3 2 8 8 O 1.21301 * 110.25122 * 180.02562 * 7 6 3 9 9 C 1.33641 * 109.80940 * 359.97438 * 8 7 6 10 10 C 1.50707 * 126.54557 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46783 * 270.01966 * 10 9 8 12 12 C 1.50709 * 109.46919 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99469 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00026 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99893 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00046 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46922 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47282 * 120.00187 * 16 14 12 19 19 H 1.48508 * 109.47177 * 240.00295 * 16 14 12 20 20 N 1.31126 * 106.89934 * 0.22375 * 9 8 7 21 21 H 1.09000 * 109.47387 * 66.59992 * 1 2 3 22 22 H 1.09002 * 109.46726 * 186.59679 * 1 2 3 23 23 H 1.09001 * 109.47531 * 306.59438 * 1 2 3 24 24 H 1.08999 * 109.47630 * 239.99722 * 2 1 3 25 25 H 1.08999 * 109.46974 * 119.99394 * 2 1 3 26 26 H 1.09002 * 109.47050 * 55.27812 * 3 2 1 27 27 H 1.08998 * 109.47181 * 54.45710 * 4 3 2 28 28 H 1.09004 * 109.46608 * 174.45713 * 4 3 2 29 29 H 1.09001 * 109.46825 * 186.22501 * 5 4 3 30 30 H 1.08999 * 109.47570 * 306.22200 * 5 4 3 31 31 H 1.09003 * 109.47097 * 66.22921 * 5 4 3 32 32 H 1.09001 * 109.47310 * 30.02136 * 10 9 8 33 33 H 1.09001 * 109.46915 * 150.02568 * 10 9 8 34 34 H 1.09001 * 109.47336 * 300.00154 * 11 10 9 35 35 H 1.08995 * 109.47250 * 60.00379 * 11 10 9 36 36 H 0.97004 * 119.99485 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4442 0.1187 5 6 3.9712 0.8839 1.4833 6 6 1.6353 2.1183 -1.2848 7 7 1.9669 1.7488 -2.4857 8 8 1.4821 2.5005 -3.3051 9 6 0.7733 3.4492 -2.6859 10 6 0.0148 4.5745 -3.3415 11 6 0.9340 5.7880 -3.4944 12 6 0.1753 6.9135 -4.1494 13 1 -0.8589 6.7765 -4.4291 14 6 0.8014 8.1177 -4.3916 15 7 2.0606 8.2845 -4.0505 16 14 -0.1388 9.5124 -5.2041 17 1 -1.5291 9.0736 -5.4865 18 1 -0.1657 10.6866 -4.2955 19 1 0.5309 9.8859 -6.4759 20 7 0.8684 3.2172 -1.3989 21 1 -0.3634 0.4081 -0.9431 22 1 -0.3633 -1.0209 0.1181 23 1 -0.3634 0.6126 0.8251 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 1.6092 1.9802 0.8447 27 1 3.9919 0.8245 -0.6700 28 1 3.9363 2.4644 0.0199 29 1 5.0486 0.9870 1.6125 30 1 3.4566 1.4353 2.2702 31 1 3.6977 -0.1698 1.5394 32 1 -0.3316 4.2549 -4.3244 33 1 -0.8421 4.8433 -2.7238 34 1 1.2804 6.1075 -2.5115 35 1 1.7909 5.5193 -4.1120 36 1 2.5012 9.1316 -4.2213 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361248707.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:26 Heat of formation + Delta-G solvation = 9.142907 kcal Electronic energy + Delta-G solvation = -16729.147160 eV Core-core repulsion = 14021.633846 eV Total energy + Delta-G solvation = -2707.513313 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.53655 -38.64918 -36.77598 -35.67123 -34.10540 -32.73546 -31.82619 -28.28647 -27.73959 -24.81193 -24.29216 -23.66179 -22.79571 -20.62427 -19.11137 -18.68335 -18.28298 -16.50526 -16.37519 -15.93489 -15.54046 -15.24885 -15.09809 -14.63056 -14.31447 -13.73773 -13.42422 -13.31300 -12.98949 -12.93950 -12.84932 -12.69194 -12.48220 -12.39181 -12.11263 -11.98895 -11.96741 -11.77185 -11.67599 -11.45965 -11.31576 -10.69861 -10.58378 -8.21118 -6.33372 0.15294 1.26035 1.45602 1.46172 1.59463 1.89056 2.43402 2.65518 3.08269 3.14502 3.73048 3.84941 3.89288 4.20657 4.25960 4.37408 4.44442 4.49951 4.52117 4.62866 4.72939 4.78833 4.88154 4.95100 4.97542 5.01049 5.12732 5.13794 5.19997 5.34867 5.40152 5.42154 5.51867 5.76856 6.12298 6.82548 7.17649 7.37115 8.91702 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041045 B = 0.004622 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.020901 B = 6056.323590 C = 6378.570548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C 0.001 3.999 4 C -0.115 4.115 5 C -0.143 4.143 6 C 0.179 3.821 7 N -0.407 5.407 8 O 0.054 5.946 9 C 0.205 3.795 10 C -0.014 4.014 11 C 0.034 3.966 12 C -0.538 4.538 13 H 0.079 0.921 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.971 3.029 17 H -0.254 1.254 18 H -0.282 1.282 19 H -0.281 1.281 20 N -0.513 5.513 21 H 0.020 0.980 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.113 0.887 34 H -0.007 1.007 35 H -0.004 1.004 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 -15.436 8.664 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.019 4.019 4 C -0.154 4.154 5 C -0.200 4.200 6 C -0.095 4.095 7 N -0.121 5.121 8 O 0.002 5.998 9 C -0.015 4.015 10 C -0.052 4.052 11 C -0.004 4.004 12 C -0.576 4.576 13 H 0.097 0.903 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.795 3.205 17 H -0.177 1.177 18 H -0.208 1.208 19 H -0.207 1.207 20 N -0.247 5.247 21 H 0.039 0.961 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.127 0.873 26 H 0.123 0.877 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.011 0.989 35 H 0.014 0.986 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.994 -15.937 8.899 18.281 hybrid contribution -0.025 1.270 -0.748 1.474 sum -1.019 -14.667 8.151 16.811 Atomic orbital electron populations 1.21762 0.95597 1.02644 1.00654 1.21638 0.96124 0.92998 1.03982 1.19989 0.97269 0.96431 0.88173 1.21544 0.92350 1.01086 1.00381 1.21771 1.01924 1.01953 0.94391 1.26431 0.94808 0.91784 0.96437 1.74469 1.20545 1.16020 1.01027 1.85250 1.48872 1.30725 1.34973 1.29528 0.92210 0.92437 0.87310 1.20500 0.96851 0.86664 1.01230 1.18945 0.94334 0.91496 0.95645 1.21601 0.98842 0.97591 1.39546 0.90321 1.26011 0.95742 1.01809 0.96250 1.70131 1.12661 1.26086 1.48736 0.85305 0.79247 0.78185 0.77741 1.17732 1.20813 1.20674 1.71948 1.20900 1.15620 1.16242 0.96077 0.90520 0.91873 0.92241 0.87287 0.87746 0.91824 0.93706 0.91691 0.91724 0.90571 0.86753 0.86897 0.98899 0.98551 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.61 71.98 0.69 -2.36 16 2 C -0.11 -2.16 5.26 30.59 0.16 -2.00 16 3 C 0.00 0.04 2.33 -11.54 -0.03 0.01 16 4 C -0.11 -2.63 5.38 30.59 0.16 -2.47 16 5 C -0.14 -2.21 9.53 71.98 0.69 -1.52 16 6 C 0.18 6.16 5.81 138.46 0.80 6.96 16 7 N -0.41 -15.08 12.16 -60.32 -0.73 -15.81 16 8 O 0.05 2.10 11.31 74.85 0.85 2.95 16 9 C 0.20 8.03 7.77 88.38 0.69 8.72 16 10 C -0.01 -0.53 5.78 29.85 0.17 -0.36 16 11 C 0.03 1.74 4.96 29.85 0.15 1.89 16 12 C -0.54 -28.87 9.11 25.60 0.23 -28.63 16 13 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 14 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 15 N -0.94 -56.33 13.29 21.45 0.28 -56.04 16 16 Si 0.97 42.71 29.54 68.60 2.03 44.74 16 17 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 N -0.51 -20.03 11.55 -303.20 -3.50 -23.53 16 21 H 0.02 0.53 7.59 -2.39 -0.02 0.51 16 22 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.11 1.48 6.51 -2.39 -0.02 1.46 16 26 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.91 6.79 -2.39 -0.02 0.89 16 32 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 33 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -65.10 304.80 4.15 -60.95 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.04 Total: 6.06 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 4.18 Total: -19.30 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -3.95 Total: -95.39 kcal Atomic # 8 Polarization: 2.10 SS G_CDS: 0.85 Total: 2.95 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -65.10 4.15 -60.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361248707.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.088 kcal (2) G-P(sol) polarization free energy of solvation -65.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds