Wall clock time and date at job start Sun Mar 29 2020 22:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30176 * 126.80098 * 2 1 4 4 O 1.20924 * 111.59896 * 180.25560 * 3 2 1 5 5 C 1.34031 * 111.57306 * 359.74554 * 4 3 2 6 6 C 1.50697 * 126.77882 * 180.02562 * 5 4 3 7 7 C 1.35453 * 106.44795 * 0.02562 * 5 4 3 8 8 C 1.50698 * 128.01275 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.47184 * 89.99602 * 8 7 5 10 10 N 1.46898 * 109.47006 * 180.02562 * 9 8 7 11 11 C 1.46903 * 110.99673 * 180.02562 * 10 9 8 12 12 H 1.08995 * 109.47420 * 34.99540 * 11 10 9 13 13 C 1.53003 * 109.46748 * 274.99491 * 11 10 9 14 14 C 1.50697 * 109.47082 * 155.00305 * 11 10 9 15 15 H 1.08002 * 119.99987 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99888 * 180.02562 * 14 11 10 17 17 N 1.31509 * 119.99946 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99863 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47356 * 89.99348 * 18 16 14 20 20 H 1.48502 * 109.46947 * 209.99537 * 18 16 14 21 21 H 1.48501 * 109.47144 * 329.99541 * 18 16 14 22 22 H 1.08999 * 109.46802 * 270.16001 * 1 2 3 23 23 H 1.08994 * 109.47455 * 30.16708 * 1 2 3 24 24 H 1.09010 * 109.47115 * 150.16410 * 1 2 3 25 25 H 1.09003 * 109.47140 * 269.99627 * 6 5 4 26 26 H 1.08998 * 109.47216 * 29.99812 * 6 5 4 27 27 H 1.09004 * 109.47334 * 150.00283 * 6 5 4 28 28 H 1.09001 * 109.46665 * 329.99991 * 8 7 5 29 29 H 1.08993 * 109.47304 * 209.99547 * 8 7 5 30 30 H 1.09001 * 109.46801 * 300.00442 * 9 8 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 9 8 7 32 32 H 1.00897 * 111.00027 * 303.95091 * 10 9 8 33 33 H 1.09005 * 109.46884 * 60.00479 * 13 11 10 34 34 H 1.09004 * 109.47165 * 180.02562 * 13 11 10 35 35 H 1.08995 * 109.47200 * 300.00184 * 13 11 10 36 36 H 0.97002 * 119.99466 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6025 -0.6068 -0.0036 6 6 4.9021 -1.3695 -0.0080 7 6 2.3540 -1.1321 0.0026 8 6 1.9590 -2.5864 0.0060 9 6 1.8319 -3.0770 1.4497 10 7 1.4475 -4.4948 1.4531 11 6 1.3152 -5.0011 2.8257 12 1 0.9205 -4.2132 3.4672 13 6 2.6871 -5.4396 3.3419 14 6 0.3741 -6.1780 2.8385 15 1 -0.0806 -6.5158 1.9189 16 6 0.0928 -6.8228 4.0242 17 7 0.6461 -6.4112 5.1440 18 14 -1.0744 -8.2813 4.0401 19 1 -0.3047 -9.5336 3.8294 20 1 -1.7714 -8.3431 5.3499 21 1 -2.0749 -8.1265 2.9538 22 1 -0.3633 0.0029 1.0277 23 1 -0.3634 0.8884 -0.5164 24 1 -0.3634 -0.8915 -0.5113 25 1 5.2111 -1.5551 -1.0367 26 1 5.6682 -0.7851 0.5016 27 1 4.7673 -2.3202 0.5079 28 1 2.7204 -3.1708 -0.5105 29 1 1.0027 -2.7044 -0.5033 30 1 2.7883 -2.9589 1.9591 31 1 1.0706 -2.4925 1.9664 32 1 0.5965 -4.6399 0.9309 33 1 3.3679 -4.5883 3.3327 34 1 2.5890 -5.8157 4.3603 35 1 3.0818 -6.2275 2.7005 36 1 0.4484 -6.8651 5.9781 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380043424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:30 Heat of formation + Delta-G solvation = 40.326066 kcal Electronic energy + Delta-G solvation = -16812.813583 eV Core-core repulsion = 14106.652472 eV Total energy + Delta-G solvation = -2706.161110 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.82861 -36.70818 -35.08867 -33.67875 -32.59107 -30.32001 -28.64851 -27.97565 -26.63839 -25.20034 -22.82978 -20.97361 -20.00133 -19.76585 -17.57980 -16.86628 -16.41462 -15.10050 -14.74436 -14.39016 -13.85147 -13.66127 -13.45823 -13.14908 -12.99689 -12.83586 -12.56200 -12.27084 -12.05491 -11.99706 -11.32586 -11.06301 -10.94650 -10.74864 -10.63281 -10.25087 -10.13763 -10.02783 -9.69746 -8.99593 -8.81434 -8.49517 -7.31903 -6.04597 -4.11352 1.52918 2.28039 3.18563 3.28476 3.34969 3.37630 4.23960 4.38460 4.51986 4.89243 4.98679 5.26335 5.27931 5.35763 5.38499 5.47623 5.56180 5.65895 5.68898 5.81663 5.85148 5.92789 5.99188 6.26201 6.43308 6.49730 6.86167 7.11409 7.21001 7.47704 7.75759 7.87371 8.25030 8.35010 8.35195 8.64044 8.99151 9.54811 11.01763 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038310 B = 0.004847 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.713443 B = 5775.663198 C = 6154.726233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.022 3.978 3 N -0.374 5.374 4 O 0.091 5.909 5 C -0.035 4.035 6 C -0.074 4.074 7 C -0.188 4.188 8 C -0.040 4.040 9 C 0.068 3.932 10 N -0.689 5.689 11 C 0.211 3.789 12 H 0.000 1.000 13 C -0.124 4.124 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.019 0.981 32 H 0.330 0.670 33 H 0.003 0.997 34 H 0.080 0.920 35 H 0.032 0.968 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.347 9.613 -9.861 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 N -0.081 5.081 4 O 0.027 5.973 5 C -0.099 4.099 6 C -0.131 4.131 7 C -0.192 4.192 8 C -0.078 4.078 9 C -0.062 4.062 10 N -0.320 5.320 11 C 0.104 3.896 12 H 0.018 0.982 13 C -0.182 4.182 14 C -0.557 4.557 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.099 0.901 23 H 0.092 0.908 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.147 0.853 33 H 0.022 0.978 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.786 10.663 -9.713 15.197 hybrid contribution -1.520 -1.093 0.452 1.926 sum 3.266 9.570 -9.261 13.712 Atomic orbital electron populations 1.20162 0.86115 1.03482 1.03540 1.23471 0.98900 0.88662 1.02639 1.73797 0.89375 1.24076 1.20812 1.84750 1.21599 1.22754 1.68216 1.24260 0.98408 0.83550 1.03654 1.20352 0.89851 0.99006 1.03883 1.21084 0.91458 0.97914 1.08745 1.19948 1.02180 0.87009 0.98699 1.21828 1.00198 0.90554 0.93670 1.60751 1.39180 1.13470 1.18582 1.19101 0.93730 0.94039 0.82753 0.98223 1.21714 0.96089 0.97554 1.02887 1.21260 1.26122 1.14474 0.93888 0.92190 1.24926 0.96192 0.97404 0.95499 1.69900 1.43478 1.40952 0.98548 0.86518 0.80901 0.82810 0.77279 1.20591 1.21284 1.19932 0.90087 0.90843 0.89923 0.89631 0.90065 0.88508 0.89943 0.90929 0.91873 0.96315 0.85307 0.97779 0.90137 0.94930 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.39 36.01 0.37 -0.50 16 2 C 0.02 0.31 7.33 -82.10 -0.60 -0.29 16 3 N -0.37 -5.77 12.07 33.42 0.40 -5.36 16 4 O 0.09 1.31 11.20 17.20 0.19 1.50 16 5 C -0.04 -0.46 7.49 -35.30 -0.26 -0.72 16 6 C -0.07 -0.68 10.25 36.00 0.37 -0.31 16 7 C -0.19 -2.62 5.58 -104.42 -0.58 -3.20 16 8 C -0.04 -0.56 5.73 -27.88 -0.16 -0.72 16 9 C 0.07 1.18 5.47 -3.82 -0.02 1.16 16 10 N -0.69 -14.20 6.30 -107.95 -0.68 -14.88 16 11 C 0.21 5.30 2.60 -68.86 -0.18 5.12 16 12 H 0.00 0.00 7.80 -51.93 -0.40 -0.40 16 13 C -0.12 -3.06 9.19 37.16 0.34 -2.72 16 14 C -0.52 -14.06 8.59 -34.44 -0.30 -14.36 16 15 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -25.33 11.32 55.43 0.63 -24.71 16 18 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.08 0.85 7.65 -51.92 -0.40 0.45 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 0.93 8.06 -51.93 -0.42 0.51 16 28 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 29 H 0.07 0.95 7.65 -51.93 -0.40 0.55 16 30 H 0.06 1.14 7.44 -51.93 -0.39 0.76 16 31 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 32 H 0.33 6.57 8.22 -39.29 -0.32 6.25 16 33 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 34 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 302.76 15.07 4.56 4.56 Total: -1.00 -29.82 302.76 -6.54 -36.37 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.52 Total: 1.44 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -1.11 Total: -14.93 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.35 Total: -44.95 kcal Atomic # 8 Polarization: 1.31 SS G_CDS: 0.19 Total: 1.50 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.82 -6.54 -36.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380043424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.692 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds