Wall clock time and date at job start Sun Mar 29 2020 22:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30176 * 126.80098 * 2 1 4 4 O 1.20924 * 111.59896 * 180.25560 * 3 2 1 5 5 C 1.34031 * 111.57306 * 359.74554 * 4 3 2 6 6 C 1.50697 * 126.77882 * 180.02562 * 5 4 3 7 7 C 1.35453 * 106.44795 * 0.02562 * 5 4 3 8 8 C 1.50698 * 128.01275 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.47184 * 89.99602 * 8 7 5 10 10 N 1.46898 * 109.47006 * 180.02562 * 9 8 7 11 11 C 1.46903 * 110.99673 * 180.02562 * 10 9 8 12 12 H 1.08995 * 109.47420 * 34.99540 * 11 10 9 13 13 C 1.53003 * 109.46748 * 274.99491 * 11 10 9 14 14 C 1.50697 * 109.47082 * 155.00305 * 11 10 9 15 15 H 1.08002 * 119.99987 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99888 * 180.02562 * 14 11 10 17 17 N 1.31509 * 119.99946 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99863 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47356 * 89.99348 * 18 16 14 20 20 H 1.48502 * 109.46947 * 209.99537 * 18 16 14 21 21 H 1.48501 * 109.47144 * 329.99541 * 18 16 14 22 22 H 1.08999 * 109.46802 * 270.16001 * 1 2 3 23 23 H 1.08994 * 109.47455 * 30.16708 * 1 2 3 24 24 H 1.09010 * 109.47115 * 150.16410 * 1 2 3 25 25 H 1.09003 * 109.47140 * 269.99627 * 6 5 4 26 26 H 1.08998 * 109.47216 * 29.99812 * 6 5 4 27 27 H 1.09004 * 109.47334 * 150.00283 * 6 5 4 28 28 H 1.09001 * 109.46665 * 329.99991 * 8 7 5 29 29 H 1.08993 * 109.47304 * 209.99547 * 8 7 5 30 30 H 1.09001 * 109.46801 * 300.00442 * 9 8 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 9 8 7 32 32 H 1.00897 * 111.00027 * 303.95091 * 10 9 8 33 33 H 1.09005 * 109.46884 * 60.00479 * 13 11 10 34 34 H 1.09004 * 109.47165 * 180.02562 * 13 11 10 35 35 H 1.08995 * 109.47200 * 300.00184 * 13 11 10 36 36 H 0.97002 * 119.99466 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6025 -0.6068 -0.0036 6 6 4.9021 -1.3695 -0.0080 7 6 2.3540 -1.1321 0.0026 8 6 1.9590 -2.5864 0.0060 9 6 1.8319 -3.0770 1.4497 10 7 1.4475 -4.4948 1.4531 11 6 1.3152 -5.0011 2.8257 12 1 0.9205 -4.2132 3.4672 13 6 2.6871 -5.4396 3.3419 14 6 0.3741 -6.1780 2.8385 15 1 -0.0806 -6.5158 1.9189 16 6 0.0928 -6.8228 4.0242 17 7 0.6461 -6.4112 5.1440 18 14 -1.0744 -8.2813 4.0401 19 1 -0.3047 -9.5336 3.8294 20 1 -1.7714 -8.3431 5.3499 21 1 -2.0749 -8.1265 2.9538 22 1 -0.3633 0.0029 1.0277 23 1 -0.3634 0.8884 -0.5164 24 1 -0.3634 -0.8915 -0.5113 25 1 5.2111 -1.5551 -1.0367 26 1 5.6682 -0.7851 0.5016 27 1 4.7673 -2.3202 0.5079 28 1 2.7204 -3.1708 -0.5105 29 1 1.0027 -2.7044 -0.5033 30 1 2.7883 -2.9589 1.9591 31 1 1.0706 -2.4925 1.9664 32 1 0.5965 -4.6399 0.9309 33 1 3.3679 -4.5883 3.3327 34 1 2.5890 -5.8157 4.3603 35 1 3.0818 -6.2275 2.7005 36 1 0.4484 -6.8651 5.9781 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380043424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:30 Heat of formation + Delta-G solvation = 21.788987 kcal Electronic energy + Delta-G solvation = -16813.617411 eV Core-core repulsion = 14106.652472 eV Total energy + Delta-G solvation = -2706.964938 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.90146 -38.22987 -36.48435 -34.85651 -34.24514 -31.85928 -29.67192 -29.28668 -27.90345 -27.22200 -24.23300 -22.15104 -21.71101 -20.99790 -18.70533 -18.47238 -17.86209 -16.87685 -16.27132 -15.70637 -15.31516 -15.11044 -14.42867 -14.32249 -14.10529 -13.93023 -13.70441 -13.67662 -13.38231 -13.12335 -12.96990 -12.80286 -12.55628 -12.39873 -12.19541 -12.10715 -11.90559 -11.65383 -10.90086 -10.78140 -10.56201 -10.01797 -9.07372 -8.12230 -6.26635 0.49941 1.20394 1.44412 1.45235 1.55242 2.21365 2.42989 3.16597 3.22202 3.56045 3.64665 3.86929 4.24223 4.30219 4.39091 4.48980 4.58448 4.64648 4.70095 4.73188 4.83325 4.86232 4.95068 5.06600 5.09259 5.15786 5.20576 5.23483 5.35879 5.49907 5.68412 5.87789 6.23725 6.46878 6.77952 7.02100 7.30136 7.44207 8.93533 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038310 B = 0.004847 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.713443 B = 5775.663198 C = 6154.726233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.014 3.986 3 N -0.400 5.400 4 O 0.082 5.918 5 C -0.025 4.025 6 C -0.074 4.074 7 C -0.210 4.210 8 C -0.023 4.023 9 C 0.073 3.927 10 N -0.682 5.682 11 C 0.214 3.786 12 H -0.035 1.035 13 C -0.113 4.113 14 C -0.537 4.537 15 H 0.063 0.937 16 C 0.012 3.988 17 N -0.920 5.920 18 Si 0.963 3.037 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.266 1.266 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.004 0.996 32 H 0.335 0.665 33 H 0.021 0.979 34 H 0.054 0.946 35 H 0.031 0.969 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 9.091 -11.148 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.144 4.144 3 N -0.109 5.109 4 O 0.020 5.980 5 C -0.088 4.088 6 C -0.131 4.131 7 C -0.215 4.215 8 C -0.061 4.061 9 C -0.057 4.057 10 N -0.313 5.313 11 C 0.106 3.894 12 H -0.018 1.018 13 C -0.172 4.172 14 C -0.575 4.575 15 H 0.081 0.919 16 C -0.187 4.187 17 N -0.559 5.559 18 Si 0.789 3.211 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.190 1.190 22 H 0.098 0.902 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.128 0.872 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.153 0.847 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.899 10.152 -11.022 15.765 hybrid contribution -1.501 -0.877 0.851 1.936 sum 3.398 9.274 -10.171 14.178 Atomic orbital electron populations 1.20272 0.84633 1.04707 1.03800 1.23946 1.00112 0.88639 1.01753 1.73790 0.89869 1.24893 1.22380 1.84723 1.21342 1.23527 1.68379 1.24922 0.99575 0.83088 1.01256 1.20554 0.88469 0.98482 1.05613 1.21128 0.92013 0.97722 1.10590 1.19744 1.03284 0.87083 0.96013 1.21811 0.99121 0.88513 0.96210 1.60654 1.39258 1.15475 1.15867 1.18915 0.93375 0.92724 0.84418 1.01780 1.21539 0.96363 0.98071 1.01199 1.21609 1.26629 1.15120 0.94134 0.91896 1.25754 0.97742 1.00084 0.95151 1.70035 1.44654 1.42176 0.99067 0.85476 0.78912 0.79371 0.77371 1.20074 1.21171 1.18987 0.90206 0.89735 0.88627 0.87239 0.88405 0.88688 0.88695 0.89845 0.92551 0.97741 0.84740 0.95966 0.92708 0.94954 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 10.39 71.24 0.74 -0.95 16 2 C 0.01 0.39 7.33 43.58 0.32 0.71 16 3 N -0.40 -12.11 12.07 -49.56 -0.60 -12.71 16 4 O 0.08 2.28 11.20 71.71 0.80 3.09 16 5 C -0.02 -0.60 7.49 25.04 0.19 -0.41 16 6 C -0.07 -1.17 10.25 71.23 0.73 -0.44 16 7 C -0.21 -5.55 5.58 -19.73 -0.11 -5.66 16 8 C -0.02 -0.60 5.73 29.85 0.17 -0.43 16 9 C 0.07 2.50 5.47 86.31 0.47 2.97 16 10 N -0.68 -27.52 6.30 -495.44 -3.12 -30.65 16 11 C 0.21 10.80 2.60 44.17 0.11 10.91 16 12 H -0.04 -2.00 7.80 -2.39 -0.02 -2.02 16 13 C -0.11 -5.59 9.19 71.98 0.66 -4.93 16 14 C -0.54 -28.97 8.59 25.60 0.22 -28.75 16 15 H 0.06 3.28 7.62 -2.91 -0.02 3.26 16 16 C 0.01 0.64 5.30 84.66 0.45 1.09 16 17 N -0.92 -52.87 11.32 21.45 0.24 -52.63 16 18 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 22 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.10 1.81 7.65 -2.38 -0.02 1.79 16 25 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.59 8.06 -2.39 -0.02 1.57 16 28 H 0.09 2.25 8.08 -2.39 -0.02 2.23 16 29 H 0.08 1.99 7.65 -2.39 -0.02 1.97 16 30 H 0.06 1.99 7.44 -2.39 -0.02 1.97 16 31 H 0.00 0.16 8.06 -2.39 -0.02 0.14 16 32 H 0.34 12.96 8.22 -89.70 -0.74 12.22 16 33 H 0.02 0.96 7.45 -2.38 -0.02 0.94 16 34 H 0.05 2.99 6.07 -2.39 -0.01 2.97 16 35 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.26 14.30 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -63.38 302.76 3.64 -59.74 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.33 Total: 14.23 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 3.96 Total: -25.89 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -3.48 Total: -95.98 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.80 Total: 3.09 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -63.38 3.64 -59.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380043424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.531 kcal (2) G-P(sol) polarization free energy of solvation -63.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds