Wall clock time and date at job start Sun Mar 29 2020 22:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 109.46985 * 2 1 4 4 N 1.30255 * 125.61586 * 90.02672 * 3 2 1 5 5 C 1.34479 * 108.69992 * 179.97438 * 4 3 2 6 6 C 1.50695 * 126.16781 * 180.02562 * 5 4 3 7 7 C 1.34330 * 107.66748 * 359.97438 * 5 4 3 8 8 C 1.50703 * 126.44381 * 180.02562 * 7 5 4 9 9 N 1.46899 * 109.47107 * 90.00137 * 8 7 5 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.46818 * 35.00369 * 10 9 8 12 12 C 1.52993 * 109.47308 * 275.00154 * 10 9 8 13 13 C 1.50695 * 109.46760 * 155.00092 * 10 9 8 14 14 H 1.08002 * 120.00262 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99815 * 180.02562 * 13 10 9 16 16 N 1.31517 * 119.99938 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99914 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47346 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.46854 * 120.00026 * 17 15 13 20 20 H 1.48502 * 109.46870 * 239.99430 * 17 15 13 21 21 O 1.33969 * 125.62147 * 270.30947 * 3 2 1 22 22 H 1.09001 * 109.47243 * 299.99500 * 1 2 3 23 23 H 1.08997 * 109.47330 * 59.99729 * 1 2 3 24 24 H 1.09002 * 109.47406 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47243 * 240.00500 * 2 1 3 26 26 H 1.08997 * 109.47330 * 120.00271 * 2 1 3 27 27 H 1.08998 * 109.47420 * 269.99936 * 6 5 4 28 28 H 1.09004 * 109.47381 * 29.99956 * 6 5 4 29 29 H 1.09000 * 109.47207 * 149.99573 * 6 5 4 30 30 H 1.09002 * 109.47152 * 330.00224 * 8 7 5 31 31 H 1.09001 * 109.46980 * 210.00324 * 8 7 5 32 32 H 1.00908 * 110.99847 * 56.05051 * 9 8 7 33 33 H 1.08999 * 109.47404 * 180.02562 * 12 10 9 34 34 H 1.09004 * 109.47538 * 300.00000 * 12 10 9 35 35 H 1.09001 * 109.46997 * 59.99957 * 12 10 9 36 36 H 0.97001 * 120.00067 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2856 2.1359 1.0589 5 6 2.7148 3.3488 0.6676 6 6 3.1174 4.4843 1.5727 7 6 2.7209 3.3653 -0.6756 8 6 3.1298 4.5189 -1.5548 9 7 4.5682 4.4312 -1.8402 10 6 5.0035 5.5419 -2.6975 11 1 4.4388 6.4391 -2.4443 12 6 4.7573 5.1813 -4.1638 13 6 6.4732 5.7960 -2.4826 14 1 7.0285 5.1925 -1.7799 15 6 7.1091 6.7990 -3.1832 16 7 6.4330 7.5336 -4.0393 17 14 8.9311 7.1135 -2.9174 18 1 9.4567 6.1575 -1.9101 19 1 9.6572 6.9311 -4.1999 20 1 9.1277 8.5027 -2.4306 21 8 2.2868 2.1585 -1.0890 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.2458 5.1012 1.7917 28 1 3.5209 4.0826 2.5023 29 1 3.8769 5.0906 1.0791 30 1 2.9174 5.4581 -1.0441 31 1 2.5708 4.4792 -2.4897 32 1 4.8008 3.5416 -2.2557 33 1 5.0807 6.0052 -4.7999 34 1 5.3220 4.2840 -4.4171 35 1 3.6942 4.9974 -4.3192 36 1 6.8803 8.2390 -4.5325 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393626003.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:18 Heat of formation + Delta-G solvation = 5.682967 kcal Electronic energy + Delta-G solvation = -16802.347659 eV Core-core repulsion = 14094.684311 eV Total energy + Delta-G solvation = -2707.663348 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.08475 -36.31178 -34.90541 -34.28718 -32.71633 -30.81085 -28.94146 -26.83459 -25.27177 -24.88937 -22.78030 -21.32947 -20.30472 -20.19443 -16.75992 -16.53263 -16.03622 -15.01893 -14.80628 -14.55606 -14.33664 -13.68330 -13.22410 -12.99334 -12.78487 -12.67654 -12.44300 -11.94685 -11.77452 -11.74530 -11.63115 -11.31533 -10.98018 -10.83927 -10.65022 -10.58179 -10.29695 -10.19385 -9.96123 -9.07866 -8.40540 -8.27633 -7.38498 -6.02562 -4.06016 1.69108 2.84839 2.90500 3.30256 3.38193 3.43960 4.09582 4.42037 4.81365 4.96895 5.03876 5.16614 5.24713 5.29417 5.34592 5.55440 5.59795 5.66161 5.86204 5.88580 5.93577 6.04463 6.15623 6.27535 6.39171 6.61677 6.66729 6.78034 7.00446 7.22923 7.67404 7.82112 7.99559 8.17526 8.39147 8.50755 9.01276 9.59553 11.04540 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040089 B = 0.004935 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.285804 B = 5672.366350 C = 5929.536128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.022 4.022 3 C 0.175 3.825 4 N -0.481 5.481 5 C -0.005 4.005 6 C -0.070 4.070 7 C -0.030 4.030 8 C 0.144 3.856 9 N -0.677 5.677 10 C 0.211 3.789 11 H 0.037 0.963 12 C -0.171 4.171 13 C -0.495 4.495 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.285 1.285 21 O -0.203 6.203 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.038 0.962 32 H 0.329 0.671 33 H 0.091 0.909 34 H 0.029 0.971 35 H 0.005 0.995 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 -10.560 6.138 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.060 4.060 3 C -0.032 4.032 4 N -0.211 5.211 5 C -0.125 4.125 6 C -0.128 4.128 7 C -0.083 4.083 8 C 0.014 3.986 9 N -0.307 5.307 10 C 0.104 3.896 11 H 0.055 0.945 12 C -0.230 4.230 13 C -0.534 4.534 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.211 1.211 21 O -0.090 6.090 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.056 0.944 32 H 0.146 0.854 33 H 0.110 0.890 34 H 0.048 0.952 35 H 0.024 0.976 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.076 -10.296 7.166 16.090 hybrid contribution 0.676 0.175 -1.570 1.719 sum -9.400 -10.122 5.595 14.903 Atomic orbital electron populations 1.21774 0.93454 1.02597 1.02886 1.19963 0.96543 0.84680 1.04841 1.26049 1.01414 0.96707 0.79046 1.70276 1.16711 1.03754 1.30392 1.21438 1.04270 0.94524 0.92284 1.20124 1.01568 0.93289 0.97786 1.23510 1.03385 0.86045 0.95350 1.20377 0.91934 0.90839 0.95447 1.60958 1.09917 1.07334 1.52516 1.19238 0.96260 0.87851 0.86260 0.94502 1.22449 0.95729 1.02020 1.02793 1.21156 0.93374 1.16153 1.22691 0.91777 1.24946 0.98388 0.95957 0.95186 1.69888 1.35873 1.21257 1.26676 0.86432 0.85020 0.78022 0.77889 1.19699 1.21193 1.21078 1.84363 1.64019 1.22979 1.37621 0.91874 0.92231 0.91158 0.89161 0.87959 0.91437 0.91146 0.89359 0.88287 0.94400 0.85418 0.89021 0.95217 0.97557 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 37.15 0.37 -0.88 16 2 C -0.02 -0.22 6.56 -27.88 -0.18 -0.40 16 3 C 0.17 2.64 7.60 -12.94 -0.10 2.54 16 4 N -0.48 -8.14 11.29 -7.36 -0.08 -8.23 16 5 C 0.00 -0.08 7.11 -82.81 -0.59 -0.67 16 6 C -0.07 -1.04 10.05 36.00 0.36 -0.67 16 7 C -0.03 -0.53 6.90 -35.69 -0.25 -0.77 16 8 C 0.14 2.62 5.64 -4.98 -0.03 2.59 16 9 N -0.68 -14.36 6.22 -109.22 -0.68 -15.04 16 10 C 0.21 5.18 2.57 -68.87 -0.18 5.00 16 11 H 0.04 0.97 7.80 -51.93 -0.41 0.57 16 12 C -0.17 -4.04 8.94 37.15 0.33 -3.71 16 13 C -0.49 -13.50 8.84 -34.44 -0.30 -13.80 16 14 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 15 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 16 N -0.90 -25.25 11.32 55.43 0.63 -24.63 16 17 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 O -0.20 -3.46 10.78 5.37 0.06 -3.40 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 1.37 7.79 -51.93 -0.40 0.97 16 30 H 0.10 1.73 7.71 -51.93 -0.40 1.33 16 31 H 0.04 0.68 7.44 -51.93 -0.39 0.30 16 32 H 0.33 6.92 8.46 -39.29 -0.33 6.58 16 33 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 34 H 0.03 0.68 8.13 -51.93 -0.42 0.25 16 35 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 303.83 15.07 4.58 4.58 Total: -1.00 -29.85 303.83 -6.74 -36.58 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.56 Total: 3.21 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -0.66 Total: -9.35 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.14 Total: -47.90 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: 0.06 Total: -3.40 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.85 -6.74 -36.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393626003.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.265 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds