Wall clock time and date at job start Sun Mar 29 2020 22:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 109.46985 * 2 1 4 4 N 1.30255 * 125.61586 * 90.02672 * 3 2 1 5 5 C 1.34479 * 108.69992 * 179.97438 * 4 3 2 6 6 C 1.50695 * 126.16781 * 180.02562 * 5 4 3 7 7 C 1.34330 * 107.66748 * 359.97438 * 5 4 3 8 8 C 1.50703 * 126.44381 * 180.02562 * 7 5 4 9 9 N 1.46899 * 109.47107 * 90.00137 * 8 7 5 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.46818 * 35.00369 * 10 9 8 12 12 C 1.52993 * 109.47308 * 275.00154 * 10 9 8 13 13 C 1.50695 * 109.46760 * 155.00092 * 10 9 8 14 14 H 1.08002 * 120.00262 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99815 * 180.02562 * 13 10 9 16 16 N 1.31517 * 119.99938 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99914 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47346 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.46854 * 120.00026 * 17 15 13 20 20 H 1.48502 * 109.46870 * 239.99430 * 17 15 13 21 21 O 1.33969 * 125.62147 * 270.30947 * 3 2 1 22 22 H 1.09001 * 109.47243 * 299.99500 * 1 2 3 23 23 H 1.08997 * 109.47330 * 59.99729 * 1 2 3 24 24 H 1.09002 * 109.47406 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47243 * 240.00500 * 2 1 3 26 26 H 1.08997 * 109.47330 * 120.00271 * 2 1 3 27 27 H 1.08998 * 109.47420 * 269.99936 * 6 5 4 28 28 H 1.09004 * 109.47381 * 29.99956 * 6 5 4 29 29 H 1.09000 * 109.47207 * 149.99573 * 6 5 4 30 30 H 1.09002 * 109.47152 * 330.00224 * 8 7 5 31 31 H 1.09001 * 109.46980 * 210.00324 * 8 7 5 32 32 H 1.00908 * 110.99847 * 56.05051 * 9 8 7 33 33 H 1.08999 * 109.47404 * 180.02562 * 12 10 9 34 34 H 1.09004 * 109.47538 * 300.00000 * 12 10 9 35 35 H 1.09001 * 109.46997 * 59.99957 * 12 10 9 36 36 H 0.97001 * 120.00067 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2856 2.1359 1.0589 5 6 2.7148 3.3488 0.6676 6 6 3.1174 4.4843 1.5727 7 6 2.7209 3.3653 -0.6756 8 6 3.1298 4.5189 -1.5548 9 7 4.5682 4.4312 -1.8402 10 6 5.0035 5.5419 -2.6975 11 1 4.4388 6.4391 -2.4443 12 6 4.7573 5.1813 -4.1638 13 6 6.4732 5.7960 -2.4826 14 1 7.0285 5.1925 -1.7799 15 6 7.1091 6.7990 -3.1832 16 7 6.4330 7.5336 -4.0393 17 14 8.9311 7.1135 -2.9174 18 1 9.4567 6.1575 -1.9101 19 1 9.6572 6.9311 -4.1999 20 1 9.1277 8.5027 -2.4306 21 8 2.2868 2.1585 -1.0890 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.2458 5.1012 1.7917 28 1 3.5209 4.0826 2.5023 29 1 3.8769 5.0906 1.0791 30 1 2.9174 5.4581 -1.0441 31 1 2.5708 4.4792 -2.4897 32 1 4.8008 3.5416 -2.2557 33 1 5.0807 6.0052 -4.7999 34 1 5.3220 4.2840 -4.4171 35 1 3.6942 4.9974 -4.3192 36 1 6.8803 8.2390 -4.5325 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393626003.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:18 Heat of formation + Delta-G solvation = -15.476608 kcal Electronic energy + Delta-G solvation = -16803.265207 eV Core-core repulsion = 14094.684311 eV Total energy + Delta-G solvation = -2708.580896 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.34773 -38.05400 -36.17062 -35.41375 -34.44873 -32.23251 -30.49125 -28.23673 -27.25116 -26.14527 -24.01175 -22.53283 -22.20120 -21.43199 -18.57696 -17.84411 -17.45926 -16.76553 -16.31865 -15.87551 -15.50913 -15.11874 -14.70354 -14.31900 -14.14540 -13.87679 -13.67147 -13.48364 -13.39083 -12.99716 -12.87028 -12.72715 -12.59858 -12.44103 -12.19191 -12.06917 -11.95929 -11.86363 -11.55317 -11.07653 -10.49320 -9.58710 -9.10131 -8.10484 -6.21255 0.41706 1.42796 1.45218 1.56884 1.61230 1.68458 2.44777 3.01495 3.18530 3.61992 3.76769 3.91384 4.09153 4.24570 4.25733 4.39350 4.54164 4.68885 4.72978 4.74879 4.84239 4.90269 4.94648 4.98960 5.05032 5.09052 5.14298 5.28811 5.34163 5.47615 5.67826 5.77152 6.21823 6.53866 6.63068 6.74235 6.90734 7.48342 8.95251 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040089 B = 0.004935 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.285804 B = 5672.366350 C = 5929.536128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.025 4.025 3 C 0.187 3.813 4 N -0.506 5.506 5 C -0.009 4.009 6 C -0.068 4.068 7 C -0.055 4.055 8 C 0.152 3.848 9 N -0.679 5.679 10 C 0.216 3.784 11 H 0.015 0.985 12 C -0.158 4.158 13 C -0.514 4.514 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.921 5.921 17 Si 0.960 3.040 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.280 1.280 21 O -0.214 6.214 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.041 0.959 32 H 0.330 0.670 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.026 0.974 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.513 -11.853 6.679 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.062 4.062 3 C -0.021 4.021 4 N -0.237 5.237 5 C -0.129 4.129 6 C -0.125 4.125 7 C -0.108 4.108 8 C 0.023 3.977 9 N -0.309 5.309 10 C 0.108 3.892 11 H 0.033 0.967 12 C -0.218 4.218 13 C -0.553 4.553 14 H 0.072 0.928 15 C -0.186 4.186 16 N -0.561 5.561 17 Si 0.786 3.214 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.206 1.206 21 O -0.102 6.102 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.137 0.863 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.059 0.941 32 H 0.147 0.853 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.381 -11.592 7.720 17.371 hybrid contribution 0.688 0.485 -1.695 1.893 sum -9.693 -11.107 6.024 15.925 Atomic orbital electron populations 1.21758 0.92038 1.04341 1.02034 1.20353 0.97582 0.81711 1.06595 1.27242 0.98809 0.97867 0.78136 1.70331 1.18238 1.03932 1.31152 1.21840 1.03321 0.95196 0.92517 1.20159 1.02064 0.92777 0.97509 1.23270 1.05624 0.86507 0.95378 1.20247 0.89965 0.91694 0.95798 1.60805 1.12259 1.06314 1.51511 1.19001 0.94818 0.88136 0.87198 0.96718 1.22265 0.96974 1.00891 1.01657 1.21410 0.94834 1.16363 1.22672 0.92839 1.25664 1.02319 0.95734 0.94919 1.69998 1.37359 1.21552 1.27168 0.85478 0.80256 0.77859 0.77828 1.19531 1.20677 1.20606 1.84357 1.64371 1.22969 1.38469 0.92848 0.92952 0.88119 0.87191 0.86348 0.89481 0.90342 0.90557 0.87889 0.94127 0.85322 0.91554 0.95090 0.95500 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 71.98 0.71 -1.32 16 2 C -0.02 -0.42 6.56 29.85 0.20 -0.23 16 3 C 0.19 5.35 7.60 88.34 0.67 6.02 16 4 N -0.51 -16.56 11.29 -291.98 -3.30 -19.86 16 5 C -0.01 -0.30 7.11 41.26 0.29 -0.01 16 6 C -0.07 -1.95 10.05 71.23 0.72 -1.23 16 7 C -0.06 -1.93 6.90 24.79 0.17 -1.76 16 8 C 0.15 5.53 5.64 85.56 0.48 6.02 16 9 N -0.68 -28.90 6.22 -499.47 -3.11 -32.01 16 10 C 0.22 10.74 2.57 44.16 0.11 10.85 16 11 H 0.01 0.80 7.80 -2.39 -0.02 0.78 16 12 C -0.16 -7.52 8.94 71.98 0.64 -6.87 16 13 C -0.51 -28.26 8.84 25.60 0.23 -28.03 16 14 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 15 C 0.01 0.66 5.30 84.66 0.45 1.11 16 16 N -0.92 -52.12 11.32 21.45 0.24 -51.88 16 17 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 O -0.21 -7.10 10.78 -3.72 -0.04 -7.14 16 22 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 23 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.08 2.37 7.79 -2.39 -0.02 2.35 16 30 H 0.10 3.61 7.71 -2.39 -0.02 3.59 16 31 H 0.04 1.45 7.44 -2.39 -0.02 1.43 16 32 H 0.33 13.85 8.46 -89.69 -0.76 13.09 16 33 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 34 H 0.03 1.41 8.13 -2.39 -0.02 1.39 16 35 H 0.03 1.12 7.45 -2.39 -0.02 1.10 16 36 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -63.15 303.83 0.81 -62.35 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.31 Total: 18.32 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 4.67 Total: -15.46 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -6.16 Total: -103.75 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.04 Total: -7.14 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -63.15 0.81 -62.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393626003.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.869 kcal (2) G-P(sol) polarization free energy of solvation -63.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds