Wall clock time and date at job start Sun Mar 29 2020 22:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46963 * 2 1 4 4 N 1.30260 * 125.61801 * 90.02734 * 3 2 1 5 5 C 1.34485 * 108.69814 * 179.97438 * 4 3 2 6 6 C 1.50696 * 126.16042 * 179.97438 * 5 4 3 7 7 C 1.34330 * 107.66950 * 359.97438 * 5 4 3 8 8 C 1.50703 * 126.44066 * 179.97438 * 7 5 4 9 9 N 1.46898 * 109.46913 * 90.00309 * 8 7 5 10 10 C 1.46902 * 110.99469 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.47286 * 324.99681 * 10 9 8 12 12 C 1.53002 * 109.47290 * 85.00071 * 10 9 8 13 13 C 1.50705 * 109.46660 * 204.99723 * 10 9 8 14 14 H 1.07991 * 120.00059 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99761 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99910 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 120.00171 * 359.97438 * 15 13 10 18 18 H 1.48509 * 109.47101 * 90.00131 * 17 15 13 19 19 H 1.48502 * 109.47301 * 209.99744 * 17 15 13 20 20 H 1.48496 * 109.47436 * 330.00081 * 17 15 13 21 21 O 1.33967 * 125.62312 * 269.98910 * 3 2 1 22 22 H 1.09004 * 109.46680 * 299.99834 * 1 2 3 23 23 H 1.08994 * 109.47332 * 59.99587 * 1 2 3 24 24 H 1.08996 * 109.46597 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46873 * 240.00682 * 2 1 3 26 26 H 1.09001 * 109.47259 * 120.00020 * 2 1 3 27 27 H 1.09003 * 109.47326 * 89.98074 * 6 5 4 28 28 H 1.08997 * 109.47260 * 209.97193 * 6 5 4 29 29 H 1.08997 * 109.47671 * 329.97682 * 6 5 4 30 30 H 1.08997 * 109.46564 * 210.00722 * 8 7 5 31 31 H 1.09004 * 109.46906 * 329.99745 * 8 7 5 32 32 H 1.00903 * 110.99506 * 303.94882 * 9 8 7 33 33 H 1.08997 * 109.47275 * 59.99602 * 12 10 9 34 34 H 1.09001 * 109.46797 * 179.97438 * 12 10 9 35 35 H 1.09000 * 109.47230 * 299.99421 * 12 10 9 36 36 H 0.96999 * 120.00261 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2857 2.1359 1.0589 5 6 2.7149 3.3488 0.6675 6 6 3.1165 4.4847 1.5727 7 6 2.7210 3.3653 -0.6757 8 6 3.1289 4.5193 -1.5549 9 7 4.5673 4.4328 -1.8403 10 6 5.0018 5.5446 -2.6965 11 1 4.2074 5.7931 -3.4003 12 6 5.3142 6.7651 -1.8283 13 6 6.2381 5.1394 -3.4570 14 1 6.6587 4.1545 -3.3185 15 6 6.8317 6.0259 -4.3305 16 7 7.9103 5.6721 -4.9945 17 14 6.1029 7.7288 -4.5718 18 1 6.7093 8.6696 -3.5957 19 1 6.3859 8.1974 -5.9522 20 1 4.6343 7.6735 -4.3592 21 8 2.2926 2.1564 -1.0890 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 4.1821 4.4156 1.7915 28 1 2.9079 5.4338 1.0792 29 1 2.5503 4.4263 2.5022 30 1 2.5698 4.4790 -2.4897 31 1 2.9155 5.4583 -1.0441 32 1 5.1041 4.4032 -0.9865 33 1 6.1085 6.5166 -1.1245 34 1 5.6370 7.5899 -2.4637 35 1 4.4199 7.0582 -1.2783 36 1 8.3281 6.2959 -5.6087 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393626005.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:20 Heat of formation + Delta-G solvation = 15.527337 kcal Electronic energy + Delta-G solvation = -16870.363558 eV Core-core repulsion = 14163.127094 eV Total energy + Delta-G solvation = -2707.236464 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.15707 -36.64328 -34.97578 -34.34379 -32.67658 -31.13535 -29.54253 -27.19642 -25.38147 -24.89529 -22.94004 -21.36783 -20.33503 -20.31266 -17.01880 -16.56647 -16.26673 -15.16519 -15.14856 -14.62842 -14.05496 -13.82689 -13.64351 -13.22263 -13.07511 -12.78179 -12.62165 -12.39463 -12.13040 -11.96725 -11.87428 -11.55326 -11.32514 -11.08265 -10.73874 -10.62978 -10.28480 -10.17791 -9.59151 -9.24036 -8.61359 -8.39496 -7.58493 -6.07505 -4.05770 1.61673 2.75509 2.83772 3.22486 3.31592 3.35708 4.02166 4.36765 4.75212 4.88497 4.97263 4.98897 5.09297 5.21202 5.26176 5.37812 5.55052 5.57219 5.63030 5.74851 5.83845 5.85924 5.92000 6.09828 6.13342 6.20446 6.32248 6.41079 6.50213 6.63871 7.02192 7.60912 7.78255 7.90414 8.15608 8.63401 9.03908 9.53868 11.05987 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038980 B = 0.005246 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.135926 B = 5335.702684 C = 5685.829567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.024 4.024 3 C 0.180 3.820 4 N -0.481 5.481 5 C -0.023 4.023 6 C -0.069 4.069 7 C -0.020 4.020 8 C 0.137 3.863 9 N -0.666 5.666 10 C 0.183 3.817 11 H 0.037 0.963 12 C -0.184 4.184 13 C -0.500 4.500 14 H 0.082 0.918 15 C 0.068 3.932 16 N -0.899 5.899 17 Si 0.886 3.114 18 H -0.280 1.280 19 H -0.296 1.296 20 H -0.269 1.269 21 O -0.190 6.190 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.335 0.665 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.027 0.973 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.679 -5.270 10.873 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.062 4.062 3 C -0.027 4.027 4 N -0.211 5.211 5 C -0.143 4.143 6 C -0.126 4.126 7 C -0.074 4.074 8 C 0.007 3.993 9 N -0.297 5.297 10 C 0.075 3.925 11 H 0.055 0.945 12 C -0.243 4.243 13 C -0.539 4.539 14 H 0.100 0.900 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.223 1.223 20 H -0.195 1.195 21 O -0.076 6.076 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.111 0.889 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.701 -5.878 10.754 18.382 hybrid contribution -0.114 2.004 -0.254 2.023 sum -13.815 -3.874 10.499 17.779 Atomic orbital electron populations 1.21774 0.93400 1.02670 1.02850 1.19994 0.96570 0.84589 1.05025 1.26103 1.00812 0.96791 0.78979 1.70266 1.16945 1.03494 1.30433 1.21450 1.05750 0.94912 0.92209 1.20087 1.01853 0.92970 0.97719 1.23335 1.03264 0.86277 0.94533 1.20371 0.92912 0.88904 0.97102 1.60682 0.99620 1.48500 1.20868 1.19694 0.97218 0.84774 0.90823 0.94549 1.22877 0.99512 1.01184 1.00722 1.20937 1.08383 1.02160 1.22380 0.89996 1.24934 0.94720 0.98179 0.95499 1.69880 1.20065 1.36061 1.27770 0.86891 0.79915 0.85197 0.76291 1.20691 1.22341 1.19474 1.84410 1.63429 1.22474 1.37275 0.91939 0.92171 0.91096 0.88910 0.87919 0.90666 0.90952 0.90955 0.89569 0.92512 0.84705 0.92496 0.93397 0.95389 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.90 37.16 0.37 -0.86 16 2 C -0.02 -0.23 6.56 -27.88 -0.18 -0.42 16 3 C 0.18 2.67 7.60 -12.94 -0.10 2.58 16 4 N -0.48 -7.75 11.30 -7.36 -0.08 -7.84 16 5 C -0.02 -0.36 7.11 -82.81 -0.59 -0.95 16 6 C -0.07 -0.86 10.22 36.00 0.37 -0.49 16 7 C -0.02 -0.34 6.90 -35.69 -0.25 -0.59 16 8 C 0.14 2.32 5.82 -4.98 -0.03 2.29 16 9 N -0.67 -13.55 6.22 -109.22 -0.68 -14.23 16 10 C 0.18 4.21 2.17 -68.86 -0.15 4.07 16 11 H 0.04 0.86 6.85 -51.93 -0.36 0.51 16 12 C -0.18 -3.79 8.64 37.16 0.32 -3.46 16 13 C -0.50 -14.03 9.42 -34.44 -0.32 -14.35 16 14 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 15 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 16 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 17 Si 0.89 21.54 24.37 -169.99 -4.14 17.39 16 18 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16 19 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.27 -6.22 6.53 56.52 0.37 -5.85 16 21 O -0.19 -3.25 10.77 5.38 0.06 -3.19 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.81 7.16 -51.93 -0.37 0.44 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.47 8.06 -51.93 -0.42 1.05 16 31 H 0.06 0.85 6.46 -51.93 -0.34 0.52 16 32 H 0.34 6.49 8.46 -39.29 -0.33 6.16 16 33 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 34 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 35 H 0.03 0.48 7.45 -51.93 -0.39 0.09 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 296.11 15.07 4.46 4.46 Total: -1.00 -32.07 296.11 -5.63 -37.70 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.36 Total: 2.73 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -0.66 Total: -10.33 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.01 Total: -48.76 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: 0.06 Total: -3.19 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.39 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.07 -5.63 -37.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393626005.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.228 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds