Wall clock time and date at job start Sun Mar 29 2020 22:20:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.50699 * 109.46963 * 2 1
4 4 N 1.30260 * 125.61801 * 90.02734 * 3 2 1
5 5 C 1.34485 * 108.69814 * 179.97438 * 4 3 2
6 6 C 1.50696 * 126.16042 * 179.97438 * 5 4 3
7 7 C 1.34330 * 107.66950 * 359.97438 * 5 4 3
8 8 C 1.50703 * 126.44066 * 179.97438 * 7 5 4
9 9 N 1.46898 * 109.46913 * 90.00309 * 8 7 5
10 10 C 1.46902 * 110.99469 * 180.02562 * 9 8 7
11 11 H 1.08997 * 109.47286 * 324.99681 * 10 9 8
12 12 C 1.53002 * 109.47290 * 85.00071 * 10 9 8
13 13 C 1.50705 * 109.46660 * 204.99723 * 10 9 8
14 14 H 1.07991 * 120.00059 * 0.02562 * 13 10 9
15 15 C 1.37876 * 119.99761 * 179.97438 * 13 10 9
16 16 N 1.31515 * 119.99910 * 180.02562 * 15 13 10
17 17 Si 1.86797 * 120.00171 * 359.97438 * 15 13 10
18 18 H 1.48509 * 109.47101 * 90.00131 * 17 15 13
19 19 H 1.48502 * 109.47301 * 209.99744 * 17 15 13
20 20 H 1.48496 * 109.47436 * 330.00081 * 17 15 13
21 21 O 1.33967 * 125.62312 * 269.98910 * 3 2 1
22 22 H 1.09004 * 109.46680 * 299.99834 * 1 2 3
23 23 H 1.08994 * 109.47332 * 59.99587 * 1 2 3
24 24 H 1.08996 * 109.46597 * 179.97438 * 1 2 3
25 25 H 1.09003 * 109.46873 * 240.00682 * 2 1 3
26 26 H 1.09001 * 109.47259 * 120.00020 * 2 1 3
27 27 H 1.09003 * 109.47326 * 89.98074 * 6 5 4
28 28 H 1.08997 * 109.47260 * 209.97193 * 6 5 4
29 29 H 1.08997 * 109.47671 * 329.97682 * 6 5 4
30 30 H 1.08997 * 109.46564 * 210.00722 * 8 7 5
31 31 H 1.09004 * 109.46906 * 329.99745 * 8 7 5
32 32 H 1.00903 * 110.99506 * 303.94882 * 9 8 7
33 33 H 1.08997 * 109.47275 * 59.99602 * 12 10 9
34 34 H 1.09001 * 109.46797 * 179.97438 * 12 10 9
35 35 H 1.09000 * 109.47230 * 299.99421 * 12 10 9
36 36 H 0.96999 * 120.00261 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2857 2.1359 1.0589
5 6 2.7149 3.3488 0.6675
6 6 3.1165 4.4847 1.5727
7 6 2.7210 3.3653 -0.6757
8 6 3.1289 4.5193 -1.5549
9 7 4.5673 4.4328 -1.8403
10 6 5.0018 5.5446 -2.6965
11 1 4.2074 5.7931 -3.4003
12 6 5.3142 6.7651 -1.8283
13 6 6.2381 5.1394 -3.4570
14 1 6.6587 4.1545 -3.3185
15 6 6.8317 6.0259 -4.3305
16 7 7.9103 5.6721 -4.9945
17 14 6.1029 7.7288 -4.5718
18 1 6.7093 8.6696 -3.5957
19 1 6.3859 8.1974 -5.9522
20 1 4.6343 7.6735 -4.3592
21 8 2.2926 2.1564 -1.0890
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 0.5139 -0.8899
24 1 -0.3632 -1.0277 -0.0005
25 1 1.8934 -0.5137 -0.8901
26 1 1.8934 -0.5138 0.8900
27 1 4.1821 4.4156 1.7915
28 1 2.9079 5.4338 1.0792
29 1 2.5503 4.4263 2.5022
30 1 2.5698 4.4790 -2.4897
31 1 2.9155 5.4583 -1.0441
32 1 5.1041 4.4032 -0.9865
33 1 6.1085 6.5166 -1.1245
34 1 5.6370 7.5899 -2.4637
35 1 4.4199 7.0582 -1.2783
36 1 8.3281 6.2959 -5.6087
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000393626005.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:20:20
Heat of formation + Delta-G solvation = 15.527337 kcal
Electronic energy + Delta-G solvation = -16870.363558 eV
Core-core repulsion = 14163.127094 eV
Total energy + Delta-G solvation = -2707.236464 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 238.142 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-43.15707 -36.64328 -34.97578 -34.34379 -32.67658 -31.13535 -29.54253 -27.19642
-25.38147 -24.89529 -22.94004 -21.36783 -20.33503 -20.31266 -17.01880 -16.56647
-16.26673 -15.16519 -15.14856 -14.62842 -14.05496 -13.82689 -13.64351 -13.22263
-13.07511 -12.78179 -12.62165 -12.39463 -12.13040 -11.96725 -11.87428 -11.55326
-11.32514 -11.08265 -10.73874 -10.62978 -10.28480 -10.17791 -9.59151 -9.24036
-8.61359 -8.39496 -7.58493 -6.07505 -4.05770 1.61673 2.75509 2.83772
3.22486 3.31592 3.35708 4.02166 4.36765 4.75212 4.88497 4.97263
4.98897 5.09297 5.21202 5.26176 5.37812 5.55052 5.57219 5.63030
5.74851 5.83845 5.85924 5.92000 6.09828 6.13342 6.20446 6.32248
6.41079 6.50213 6.63871 7.02192 7.60912 7.78255 7.90414 8.15608
8.63401 9.03908 9.53868 11.05987
Molecular weight = 238.14amu
Principal moments of inertia in cm(-1)
A = 0.038980 B = 0.005246 C = 0.004923
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 718.135926 B = 5335.702684 C = 5685.829567
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.024 4.024
3 C 0.180 3.820
4 N -0.481 5.481
5 C -0.023 4.023
6 C -0.069 4.069
7 C -0.020 4.020
8 C 0.137 3.863
9 N -0.666 5.666
10 C 0.183 3.817
11 H 0.037 0.963
12 C -0.184 4.184
13 C -0.500 4.500
14 H 0.082 0.918
15 C 0.068 3.932
16 N -0.899 5.899
17 Si 0.886 3.114
18 H -0.280 1.280
19 H -0.296 1.296
20 H -0.269 1.269
21 O -0.190 6.190
22 H 0.061 0.939
23 H 0.059 0.941
24 H 0.070 0.930
25 H 0.092 0.908
26 H 0.102 0.898
27 H 0.075 0.925
28 H 0.072 0.928
29 H 0.071 0.929
30 H 0.086 0.914
31 H 0.057 0.943
32 H 0.335 0.665
33 H 0.056 0.944
34 H 0.048 0.952
35 H 0.027 0.973
36 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.679 -5.270 10.873 18.251
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.062 4.062
3 C -0.027 4.027
4 N -0.211 5.211
5 C -0.143 4.143
6 C -0.126 4.126
7 C -0.074 4.074
8 C 0.007 3.993
9 N -0.297 5.297
10 C 0.075 3.925
11 H 0.055 0.945
12 C -0.243 4.243
13 C -0.539 4.539
14 H 0.100 0.900
15 C -0.133 4.133
16 N -0.538 5.538
17 Si 0.717 3.283
18 H -0.207 1.207
19 H -0.223 1.223
20 H -0.195 1.195
21 O -0.076 6.076
22 H 0.081 0.919
23 H 0.078 0.922
24 H 0.089 0.911
25 H 0.111 0.889
26 H 0.121 0.879
27 H 0.093 0.907
28 H 0.090 0.910
29 H 0.090 0.910
30 H 0.104 0.896
31 H 0.075 0.925
32 H 0.153 0.847
33 H 0.075 0.925
34 H 0.066 0.934
35 H 0.046 0.954
36 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -13.701 -5.878 10.754 18.382
hybrid contribution -0.114 2.004 -0.254 2.023
sum -13.815 -3.874 10.499 17.779
Atomic orbital electron populations
1.21774 0.93400 1.02670 1.02850 1.19994 0.96570 0.84589 1.05025
1.26103 1.00812 0.96791 0.78979 1.70266 1.16945 1.03494 1.30433
1.21450 1.05750 0.94912 0.92209 1.20087 1.01853 0.92970 0.97719
1.23335 1.03264 0.86277 0.94533 1.20371 0.92912 0.88904 0.97102
1.60682 0.99620 1.48500 1.20868 1.19694 0.97218 0.84774 0.90823
0.94549 1.22877 0.99512 1.01184 1.00722 1.20937 1.08383 1.02160
1.22380 0.89996 1.24934 0.94720 0.98179 0.95499 1.69880 1.20065
1.36061 1.27770 0.86891 0.79915 0.85197 0.76291 1.20691 1.22341
1.19474 1.84410 1.63429 1.22474 1.37275 0.91939 0.92171 0.91096
0.88910 0.87919 0.90666 0.90952 0.90955 0.89569 0.92512 0.84705
0.92496 0.93397 0.95389 0.92609
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.22 9.90 37.16 0.37 -0.86 16
2 C -0.02 -0.23 6.56 -27.88 -0.18 -0.42 16
3 C 0.18 2.67 7.60 -12.94 -0.10 2.58 16
4 N -0.48 -7.75 11.30 -7.36 -0.08 -7.84 16
5 C -0.02 -0.36 7.11 -82.81 -0.59 -0.95 16
6 C -0.07 -0.86 10.22 36.00 0.37 -0.49 16
7 C -0.02 -0.34 6.90 -35.69 -0.25 -0.59 16
8 C 0.14 2.32 5.82 -4.98 -0.03 2.29 16
9 N -0.67 -13.55 6.22 -109.22 -0.68 -14.23 16
10 C 0.18 4.21 2.17 -68.86 -0.15 4.07 16
11 H 0.04 0.86 6.85 -51.93 -0.36 0.51 16
12 C -0.18 -3.79 8.64 37.16 0.32 -3.46 16
13 C -0.50 -14.03 9.42 -34.44 -0.32 -14.35 16
14 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16
15 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16
16 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16
17 Si 0.89 21.54 24.37 -169.99 -4.14 17.39 16
18 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16
19 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16
20 H -0.27 -6.22 6.53 56.52 0.37 -5.85 16
21 O -0.19 -3.25 10.77 5.38 0.06 -3.19 16
22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
26 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16
27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
28 H 0.07 0.81 7.16 -51.93 -0.37 0.44 16
29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
30 H 0.09 1.47 8.06 -51.93 -0.42 1.05 16
31 H 0.06 0.85 6.46 -51.93 -0.34 0.52 16
32 H 0.34 6.49 8.46 -39.29 -0.33 6.16 16
33 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16
34 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16
35 H 0.03 0.48 7.45 -51.93 -0.39 0.09 16
36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
LS Contribution 296.11 15.07 4.46 4.46
Total: -1.00 -32.07 296.11 -5.63 -37.70
By element:
Atomic # 1 Polarization: 8.09 SS G_CDS: -5.36 Total: 2.73 kcal
Atomic # 6 Polarization: -9.67 SS G_CDS: -0.66 Total: -10.33 kcal
Atomic # 7 Polarization: -48.77 SS G_CDS: 0.01 Total: -48.76 kcal
Atomic # 8 Polarization: -3.25 SS G_CDS: 0.06 Total: -3.19 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.39 kcal
Total LS contribution 4.46 Total: 4.46 kcal
Total: -32.07 -5.63 -37.70 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000393626005.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.228 kcal
(2) G-P(sol) polarization free energy of solvation -32.073 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.155 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.527 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds