Wall clock time and date at job start Sun Mar 29 2020 22:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46963 * 2 1 4 4 N 1.30260 * 125.61801 * 90.02734 * 3 2 1 5 5 C 1.34485 * 108.69814 * 179.97438 * 4 3 2 6 6 C 1.50696 * 126.16042 * 179.97438 * 5 4 3 7 7 C 1.34330 * 107.66950 * 359.97438 * 5 4 3 8 8 C 1.50703 * 126.44066 * 179.97438 * 7 5 4 9 9 N 1.46898 * 109.46913 * 90.00309 * 8 7 5 10 10 C 1.46902 * 110.99469 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.47286 * 324.99681 * 10 9 8 12 12 C 1.53002 * 109.47290 * 85.00071 * 10 9 8 13 13 C 1.50705 * 109.46660 * 204.99723 * 10 9 8 14 14 H 1.07991 * 120.00059 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99761 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99910 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 120.00171 * 359.97438 * 15 13 10 18 18 H 1.48509 * 109.47101 * 90.00131 * 17 15 13 19 19 H 1.48502 * 109.47301 * 209.99744 * 17 15 13 20 20 H 1.48496 * 109.47436 * 330.00081 * 17 15 13 21 21 O 1.33967 * 125.62312 * 269.98910 * 3 2 1 22 22 H 1.09004 * 109.46680 * 299.99834 * 1 2 3 23 23 H 1.08994 * 109.47332 * 59.99587 * 1 2 3 24 24 H 1.08996 * 109.46597 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46873 * 240.00682 * 2 1 3 26 26 H 1.09001 * 109.47259 * 120.00020 * 2 1 3 27 27 H 1.09003 * 109.47326 * 89.98074 * 6 5 4 28 28 H 1.08997 * 109.47260 * 209.97193 * 6 5 4 29 29 H 1.08997 * 109.47671 * 329.97682 * 6 5 4 30 30 H 1.08997 * 109.46564 * 210.00722 * 8 7 5 31 31 H 1.09004 * 109.46906 * 329.99745 * 8 7 5 32 32 H 1.00903 * 110.99506 * 303.94882 * 9 8 7 33 33 H 1.08997 * 109.47275 * 59.99602 * 12 10 9 34 34 H 1.09001 * 109.46797 * 179.97438 * 12 10 9 35 35 H 1.09000 * 109.47230 * 299.99421 * 12 10 9 36 36 H 0.96999 * 120.00261 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2857 2.1359 1.0589 5 6 2.7149 3.3488 0.6675 6 6 3.1165 4.4847 1.5727 7 6 2.7210 3.3653 -0.6757 8 6 3.1289 4.5193 -1.5549 9 7 4.5673 4.4328 -1.8403 10 6 5.0018 5.5446 -2.6965 11 1 4.2074 5.7931 -3.4003 12 6 5.3142 6.7651 -1.8283 13 6 6.2381 5.1394 -3.4570 14 1 6.6587 4.1545 -3.3185 15 6 6.8317 6.0259 -4.3305 16 7 7.9103 5.6721 -4.9945 17 14 6.1029 7.7288 -4.5718 18 1 6.7093 8.6696 -3.5957 19 1 6.3859 8.1974 -5.9522 20 1 4.6343 7.6735 -4.3592 21 8 2.2926 2.1564 -1.0890 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 4.1821 4.4156 1.7915 28 1 2.9079 5.4338 1.0792 29 1 2.5503 4.4263 2.5022 30 1 2.5698 4.4790 -2.4897 31 1 2.9155 5.4583 -1.0441 32 1 5.1041 4.4032 -0.9865 33 1 6.1085 6.5166 -1.1245 34 1 5.6370 7.5899 -2.4637 35 1 4.4199 7.0582 -1.2783 36 1 8.3281 6.2959 -5.6087 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393626005.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:20 Heat of formation + Delta-G solvation = -9.914388 kcal Electronic energy + Delta-G solvation = -16871.466794 eV Core-core repulsion = 14163.127094 eV Total energy + Delta-G solvation = -2708.339700 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.34787 -38.26085 -36.17073 -35.41329 -34.47119 -32.60022 -30.87063 -28.44127 -27.14933 -26.20267 -24.07355 -22.52350 -22.13345 -21.46406 -18.92602 -17.83546 -17.62943 -16.87725 -16.39551 -15.79261 -15.55891 -15.09585 -14.90039 -14.63715 -14.21130 -14.17432 -13.95345 -13.73331 -13.48367 -13.15798 -12.96744 -12.85071 -12.59634 -12.50224 -12.06209 -11.99499 -11.87562 -11.56411 -11.45302 -11.23238 -10.75592 -9.61059 -9.14283 -8.26815 -6.30722 0.41221 1.31803 1.37844 1.48113 1.59352 1.72054 2.33279 3.00952 3.07363 3.45640 3.80453 3.85327 4.06210 4.20657 4.24559 4.33231 4.45316 4.51540 4.58021 4.67125 4.69715 4.74508 4.82085 4.92705 4.95142 5.00411 5.09375 5.15417 5.27771 5.38674 5.44250 5.64422 5.92836 6.57514 6.61528 6.73789 6.76454 7.34168 8.90860 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038980 B = 0.005246 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.135926 B = 5335.702684 C = 5685.829567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.027 4.027 3 C 0.184 3.816 4 N -0.505 5.505 5 C -0.020 4.020 6 C -0.070 4.070 7 C -0.051 4.051 8 C 0.144 3.856 9 N -0.684 5.684 10 C 0.188 3.812 11 H 0.036 0.964 12 C -0.178 4.178 13 C -0.509 4.509 14 H 0.030 0.970 15 C 0.008 3.992 16 N -0.953 5.953 17 Si 0.956 3.044 18 H -0.264 1.264 19 H -0.301 1.301 20 H -0.244 1.244 21 O -0.212 6.212 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.339 0.661 33 H 0.056 0.944 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.716 -4.211 12.297 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 C -0.022 4.022 4 N -0.236 5.236 5 C -0.140 4.140 6 C -0.127 4.127 7 C -0.104 4.104 8 C 0.016 3.984 9 N -0.316 5.316 10 C 0.079 3.921 11 H 0.054 0.946 12 C -0.237 4.237 13 C -0.547 4.547 14 H 0.048 0.952 15 C -0.189 4.189 16 N -0.594 5.594 17 Si 0.783 3.217 18 H -0.190 1.190 19 H -0.229 1.229 20 H -0.168 1.168 21 O -0.099 6.099 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.118 0.882 25 H 0.124 0.876 26 H 0.137 0.863 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.157 0.843 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.761 -4.825 12.214 20.515 hybrid contribution 0.515 1.465 -0.645 1.682 sum -15.246 -3.360 11.569 19.431 Atomic orbital electron populations 1.21750 0.91894 1.04317 1.02083 1.20342 0.97726 0.81981 1.06412 1.27196 0.98887 0.97947 0.78217 1.70330 1.18262 1.04013 1.30954 1.21988 1.04157 0.95501 0.92342 1.20230 1.02234 0.92433 0.97776 1.23331 1.05541 0.86561 0.94981 1.20319 0.90319 0.90385 0.97416 1.60455 1.01944 1.47966 1.21197 1.19452 0.94575 0.86619 0.91407 0.94632 1.22726 1.01493 0.99123 1.00348 1.21244 1.10181 1.00083 1.23212 0.95203 1.25863 0.94979 1.03024 0.95035 1.70057 1.22181 1.37992 1.29125 0.85756 0.80451 0.79405 0.76109 1.18966 1.22893 1.16829 1.84399 1.64006 1.23032 1.38451 0.92630 0.92969 0.88240 0.87630 0.86349 0.90181 0.89327 0.89818 0.90130 0.89664 0.84262 0.92469 0.94316 0.91215 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.90 71.98 0.71 -1.34 16 2 C -0.03 -0.48 6.56 29.85 0.20 -0.29 16 3 C 0.18 5.29 7.60 88.34 0.67 5.97 16 4 N -0.51 -15.68 11.30 -291.98 -3.30 -18.98 16 5 C -0.02 -0.59 7.11 41.26 0.29 -0.30 16 6 C -0.07 -1.56 10.22 71.23 0.73 -0.84 16 7 C -0.05 -1.68 6.90 24.79 0.17 -1.51 16 8 C 0.14 4.66 5.82 85.56 0.50 5.16 16 9 N -0.68 -27.37 6.22 -499.45 -3.11 -30.48 16 10 C 0.19 8.44 2.17 44.17 0.10 8.53 16 11 H 0.04 1.61 6.85 -2.39 -0.02 1.59 16 12 C -0.18 -6.76 8.64 71.98 0.62 -6.13 16 13 C -0.51 -29.18 9.42 25.60 0.24 -28.94 16 14 H 0.03 1.96 8.06 -2.92 -0.02 1.94 16 15 C 0.01 0.44 5.45 84.65 0.46 0.90 16 16 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 17 Si 0.96 43.82 24.37 68.60 1.67 45.49 16 18 H -0.26 -11.35 6.87 99.48 0.68 -10.67 16 19 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 20 H -0.24 -10.14 6.53 99.48 0.65 -9.49 16 21 O -0.21 -7.17 10.77 -3.68 -0.04 -7.21 16 22 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.09 1.68 7.16 -2.39 -0.02 1.67 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 2.66 8.06 -2.39 -0.02 2.64 16 31 H 0.09 2.25 6.46 -2.38 -0.02 2.23 16 32 H 0.34 12.90 8.46 -89.69 -0.76 12.14 16 33 H 0.06 2.14 8.13 -2.39 -0.02 2.12 16 34 H 0.04 1.54 3.27 -2.39 -0.01 1.53 16 35 H 0.07 2.06 7.45 -2.39 -0.02 2.05 16 36 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -71.51 296.11 0.45 -71.06 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.24 Total: 18.67 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 4.69 Total: -18.79 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -6.11 Total: -109.22 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.04 Total: -7.21 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.67 Total: 45.49 kcal Total: -71.51 0.45 -71.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393626005.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.142 kcal (2) G-P(sol) polarization free energy of solvation -71.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds