Wall clock time and date at job start Sun Mar 29 2020 21:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00078 * 2 1 4 4 H 1.48503 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47043 * 300.00118 * 3 2 1 6 6 H 1.48499 * 109.46869 * 60.00449 * 3 2 1 7 7 C 1.37878 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00299 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00016 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.52423 * 59.92341 * 9 7 2 11 11 C 1.53042 * 109.50001 * 180.02562 * 9 7 2 12 12 C 1.53037 * 109.53810 * 181.31849 * 11 9 7 13 13 C 1.53191 * 109.31166 * 298.62927 * 12 11 9 14 14 N 1.46923 * 108.77634 * 54.64112 * 13 12 11 15 15 C 1.34775 * 120.63669 * 126.36392 * 14 13 12 16 16 O 1.21586 * 120.00152 * 185.22202 * 15 14 13 17 17 N 1.34779 * 119.99585 * 5.22565 * 15 14 13 18 18 C 1.46501 * 119.99788 * 174.79923 * 17 15 14 19 19 C 1.53002 * 117.49761 * 224.01818 * 18 17 15 20 20 C 1.53004 * 117.49572 * 155.35815 * 18 17 15 21 21 C 1.46935 * 118.73478 * 306.64070 * 14 13 12 22 22 H 0.97002 * 120.00046 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.45796 * 61.29550 * 11 9 7 24 24 H 1.09000 * 109.44383 * 301.32969 * 11 9 7 25 25 H 1.09004 * 109.49692 * 178.67896 * 12 11 9 26 26 H 1.09000 * 109.49673 * 58.58592 * 12 11 9 27 27 H 1.08995 * 109.59022 * 294.85026 * 13 12 11 28 28 H 1.09005 * 109.70324 * 174.49405 * 13 12 11 29 29 H 0.97004 * 119.99977 * 355.06603 * 17 15 14 30 30 H 1.09000 * 115.54826 * 9.69190 * 18 17 15 31 31 H 1.08998 * 117.50030 * 0.02562 * 19 18 17 32 32 H 1.08995 * 117.49615 * 145.01823 * 19 18 17 33 33 H 1.09000 * 117.49880 * 214.97536 * 20 18 17 34 34 H 1.08996 * 117.50214 * 359.97438 * 20 18 17 35 35 H 1.09004 * 109.58406 * 173.14303 * 21 14 13 36 36 H 1.08991 * 109.58243 * 293.56998 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6227 -2.5570 -0.8893 11 6 2.2449 -3.6629 -0.0005 12 6 1.4809 -4.9885 -0.0337 13 6 0.6057 -5.1003 1.2186 14 7 -0.2529 -3.9110 1.3032 15 6 -1.5893 -4.0360 1.4248 16 8 -2.2973 -3.0479 1.3983 17 7 -2.1410 -5.2565 1.5757 18 6 -3.5794 -5.3847 1.8219 19 6 -4.0261 -6.3728 2.9013 20 6 -4.2498 -6.7009 1.4229 21 6 0.3726 -2.5827 1.2465 22 1 -0.4850 0.8401 -0.0004 23 1 2.8561 -3.6185 0.9009 24 1 2.8870 -3.5918 -0.8785 25 1 2.1896 -5.8164 -0.0574 26 1 0.8507 -5.0230 -0.9224 27 1 1.2395 -5.1571 2.1035 28 1 -0.0142 -5.9947 1.1551 29 1 -1.5849 -6.0497 1.5253 30 1 -4.1596 -4.4692 1.7064 31 1 -3.2497 -6.9271 3.4286 32 1 -4.9003 -6.1074 3.4958 33 1 -5.2712 -6.6514 1.0455 34 1 -3.6207 -7.4712 0.9770 35 1 -0.4010 -1.8163 1.1989 36 1 0.9870 -2.4301 2.1337 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397570525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:24 Heat of formation + Delta-G solvation = -4.385480 kcal Electronic energy + Delta-G solvation = -17443.600714 eV Core-core repulsion = 14735.500765 eV Total energy + Delta-G solvation = -2708.099948 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77159 -37.52199 -36.25846 -33.53489 -32.25989 -31.38469 -29.65498 -25.06652 -24.61080 -22.41679 -21.93217 -21.60817 -20.10928 -18.86554 -17.48856 -16.36599 -16.13657 -14.82649 -14.61322 -14.50091 -14.26231 -13.70317 -13.36673 -12.86245 -12.60914 -12.55715 -12.23873 -11.91369 -11.63642 -11.16125 -10.98146 -10.88487 -10.50254 -10.45265 -10.37157 -10.20758 -9.85420 -9.43592 -9.07297 -8.91747 -8.50459 -8.38793 -7.62463 -5.95255 -4.04693 3.14851 3.33177 3.40945 3.43921 3.62156 4.11505 4.34966 4.47539 4.81677 4.98524 5.01002 5.28556 5.34439 5.50341 5.55871 5.61844 5.76291 5.92681 6.01753 6.02647 6.17552 6.32790 6.60826 6.68940 6.81389 6.87221 7.01406 7.06563 7.37519 7.52583 7.77565 7.95792 8.09714 8.43929 8.58961 8.99361 9.25982 9.60910 11.09652 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034163 B = 0.006476 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.392619 B = 4322.408758 C = 4962.935539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.038 3.962 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.115 3.885 14 N -0.622 5.622 15 C 0.703 3.297 16 O -0.580 6.580 17 N -0.728 5.728 18 C 0.110 3.890 19 C -0.201 4.201 20 C -0.196 4.196 21 C 0.128 3.872 22 H 0.263 0.737 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.391 0.609 30 H 0.137 0.863 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.021 -13.890 3.591 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.019 3.981 10 H 0.047 0.953 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.358 5.358 15 C 0.404 3.596 16 O -0.457 6.457 17 N -0.385 5.385 18 C 0.002 3.998 19 C -0.240 4.240 20 C -0.235 4.235 21 C 0.008 3.992 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.227 0.773 30 H 0.155 0.845 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.142 0.858 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.656 -12.969 3.582 13.942 hybrid contribution 0.756 0.296 -0.017 0.812 sum -2.900 -12.672 3.566 13.480 Atomic orbital electron populations 1.69913 1.05694 1.26683 1.49268 1.25068 0.94873 0.99248 0.94888 0.86545 0.80027 0.83877 0.77612 1.19813 1.21038 1.20982 1.21106 0.92903 0.90103 1.51853 0.92328 1.18921 0.92641 0.92243 0.94310 0.95340 1.21613 0.98540 0.94048 1.00535 1.21947 0.98603 0.99180 0.97456 1.21494 0.93364 0.87444 0.98594 1.47796 1.03428 1.08946 1.75668 1.15905 0.82633 0.83001 0.78035 1.90921 1.60347 1.36543 1.57863 1.44754 1.07429 1.07541 1.78761 1.21336 0.82193 0.95164 1.01113 1.23442 1.03711 1.04819 0.92056 1.23373 1.02323 0.99915 0.97876 1.22116 0.98407 0.80505 0.98201 0.92713 0.93185 0.93039 0.92312 0.92173 0.92120 0.92270 0.77264 0.84501 0.88873 0.88290 0.88151 0.88840 0.85830 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.01 11.39 55.43 0.63 -25.38 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.25 8.56 -34.44 -0.29 -14.55 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.04 0.96 2.24 -91.87 -0.21 0.75 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.19 5.11 -26.69 -0.14 -2.33 16 12 C -0.13 -2.16 6.08 -26.61 -0.16 -2.32 16 13 C 0.12 1.80 6.39 -3.71 -0.02 1.78 16 14 N -0.62 -12.81 2.98 -178.76 -0.53 -13.35 16 15 C 0.70 14.81 8.29 -86.92 -0.72 14.08 16 16 O -0.58 -14.94 15.33 5.29 0.08 -14.86 16 17 N -0.73 -11.40 5.48 -58.67 -0.32 -11.72 16 18 C 0.11 1.51 6.44 -67.93 -0.44 1.07 16 19 C -0.20 -2.11 10.46 -26.69 -0.28 -2.38 16 20 C -0.20 -2.00 10.46 -26.69 -0.28 -2.28 16 21 C 0.13 3.17 5.39 -3.93 -0.02 3.15 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.73 5.64 -51.93 -0.29 0.44 16 29 H 0.39 4.97 6.31 -40.82 -0.26 4.71 16 30 H 0.14 2.16 7.39 -51.93 -0.38 1.78 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.12 3.59 5.10 -51.93 -0.27 3.33 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 290.82 15.07 4.38 4.38 Total: -1.00 -31.96 290.82 -8.83 -40.79 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.39 Total: 5.12 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.65 Total: -1.38 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.22 Total: -50.45 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.08 Total: -14.86 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.96 -8.83 -40.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397570525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.402 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds